pypi: EAST
Text analysis library based on the Annotated Suffix Tree methodPapers that mentioned: 95
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bioconductor: iPath
iPath pipeline for detecting perturbed pathways at individual levelPapers that mentioned: 95
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pypi: EMIRGE
EMIRGE reconstructs full length sequences from short sequencing readsPapers that mentioned: 94
Very Likely Science (100)
cran: foreign
Read Data Stored by 'Minitab', 'S', 'SAS', 'SPSS', 'Stata', 'Systat', 'Weka', 'dBase', ...Papers that mentioned: 94
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bioconductor: beadarray
Quality assessment and low-level analysis for Illumina BeadArray dataPapers that mentioned: 94
Very Likely Science (100)
cran: PerformanceAnalytics
Econometric Tools for Performance and Risk AnalysisPapers that mentioned: 93
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cran: PROMETHEE
Preference Ranking Organization METHod for Enrichment of EvaluationsPapers that mentioned: 92
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bioconductor: vsn
Variance stabilization and calibration for microarray dataPapers that mentioned: 91
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cran: GUniFrac
Generalized UniFrac Distances, Distance-Based Multivariate Methods and Feature-Based Univariate Methods for Microbiome Data AnalysisPapers that mentioned: 91
Very Likely Science (93)
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cran: nparLD
Nonparametric Analysis of Longitudinal Data in Factorial ExperimentsPapers that mentioned: 90
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pypi: NanoPlot
Plotting suite for Oxford Nanopore sequencing data and alignmentsPapers that mentioned: 90
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pypi: Size
This module manages sizes as they are reported by various UNIX commands.Papers that mentioned: 89
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cran: TANDEM
A Two-Stage Approach to Maximize Interpretability of Drug Response Models Based on Multiple Molecular Data TypesPapers that mentioned: 89
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pypi: tmap
A topological data analysis framework implementing the TDA Mapper algorithm for population-scale microbiome data analysisPapers that mentioned: 88
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cran: minpack.lm
R Interface to the Levenberg-Marquardt Nonlinear Least-Squares Algorithm Found in MINPACK, Plus Support for BoundsPapers that mentioned: 87
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cran: bipartite
Visualising Bipartite Networks and Calculating Some (Ecological) IndicesPapers that mentioned: 86
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pypi: genetics
Genetic Algorithm in Python, which could be used for Sampling, Feature Select, Model Select, etc in Machine LearningPapers that mentioned: 86
Very Likely Science (90)
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pypi: CGAL
CGAL bindings, allowing to use some of the CGAL library in Python.Papers that mentioned: 85
Very Likely Science (100)
cran: diveRsity
A Comprehensive, General Purpose Population Genetics Analysis PackagePapers that mentioned: 85
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pypi: ACEMD
Papers that mentioned: 84
Very Likely Science (80)
cran: SMM
Simulation and Estimation of Multi-State Discrete-Time Semi-Markov and Markov ModelsPapers that mentioned: 84
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bioconductor: BioPlex
Papers that mentioned: 84
Unlikely Science (0)
bioconductor: SIMD
Statistical Inferences with MeDIP-seq Data (SIMD) to infer the methylation level for each CpG sitePapers that mentioned: 83
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pypi: Benchling
Papers that mentioned: 83
Very Likely Science (65)
bioconductor: cummeRbund
Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.Papers that mentioned: 83
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pypi: Magics
Python interface to plot meteorological data in GRIB, NetCDF and BUFR.Papers that mentioned: 83
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pypi: arm
Papers that mentioned: 82
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cran: arm
Data Analysis Using Regression and Multilevel/Hierarchical ModelsPapers that mentioned: 82
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cran: effects
Effect Displays for Linear, Generalized Linear, and Other ModelsPapers that mentioned: 82
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pypi: base
Papers that mentioned: 82
Very Likely Science (65)