Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
bioconductor: iPath
iPath pipeline for detecting perturbed pathways at individual levelPapers that mentioned: 95
pypi: EAST
Text analysis library based on the Annotated Suffix Tree methodPapers that mentioned: 95
bioconductor: beadarray
Quality assessment and low-level analysis for Illumina BeadArray dataPapers that mentioned: 94
cran: foreign
Read Data Stored by 'Minitab', 'S', 'SAS', 'SPSS', 'Stata', 'Systat', 'Weka', 'dBase', ...Papers that mentioned: 94
pypi: EMIRGE
EMIRGE reconstructs full length sequences from short sequencing readsPapers that mentioned: 94
cran: PerformanceAnalytics
Econometric Tools for Performance and Risk AnalysisPapers that mentioned: 93
cran: PROMETHEE
Preference Ranking Organization METHod for Enrichment of EvaluationsPapers that mentioned: 92
bioconductor: vsn
Variance stabilization and calibration for microarray dataPapers that mentioned: 91
cran: GUniFrac
Generalized UniFrac Distances, Distance-Based Multivariate Methods and Feature-Based Univariate Methods for Microbiome Data AnalysisPapers that mentioned: 91
cran: nparLD
Nonparametric Analysis of Longitudinal Data in Factorial ExperimentsPapers that mentioned: 90
pypi: NanoPlot
Plotting suite for Oxford Nanopore sequencing data and alignmentsPapers that mentioned: 90
cran: TANDEM
A Two-Stage Approach to Maximize Interpretability of Drug Response Models Based on Multiple Molecular Data TypesPapers that mentioned: 89
pypi: Size
This module manages sizes as they are reported by various UNIX commands.Papers that mentioned: 89
pypi: tmap
A topological data analysis framework implementing the TDA Mapper algorithm for population-scale microbiome data analysisPapers that mentioned: 88
cran: minpack.lm
R Interface to the Levenberg-Marquardt Nonlinear Least-Squares Algorithm Found in MINPACK, Plus Support for BoundsPapers that mentioned: 87
pypi: genetics
Genetic Algorithm in Python, which could be used for Sampling, Feature Select, Model Select, etc in Machine LearningPapers that mentioned: 86
cran: bipartite
Visualising Bipartite Networks and Calculating Some (Ecological) IndicesPapers that mentioned: 86
pypi: CGAL
CGAL bindings, allowing to use some of the CGAL library in Python.Papers that mentioned: 85
cran: diveRsity
A Comprehensive, General Purpose Population Genetics Analysis PackagePapers that mentioned: 85
cran: SMM
Simulation and Estimation of Multi-State Discrete-Time Semi-Markov and Markov ModelsPapers that mentioned: 84
bioconductor: BioPlex
Papers that mentioned: 84bioconductor: cummeRbund
Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.Papers that mentioned: 83
bioconductor: SIMD
Statistical Inferences with MeDIP-seq Data (SIMD) to infer the methylation level for each CpG sitePapers that mentioned: 83
pypi: Magics
Python interface to plot meteorological data in GRIB, NetCDF and BUFR.Papers that mentioned: 83
bioconductor: STRINGdb
STRINGdb - Protein-Protein Interaction Networks and Functional Enrichment AnalysisPapers that mentioned: 82
cran: effects
Effect Displays for Linear, Generalized Linear, and Other ModelsPapers that mentioned: 82
cran: arm
Data Analysis Using Regression and Multilevel/Hierarchical ModelsPapers that mentioned: 82