Ecosyste.ms: Papers

10.1534/g3.111.001834

Integration of the Draft Sequence and Physical Map as a Framework for Genomic Research in Soybean (<i>Glycine max</i> (L.) Merr.) and Wild Soybean (<i>Glycine soja</i> Sieb. and Zucc.)
Cited by: 8
Author(s): Jung Min Ha, Brian Abernathy, William M. Nelson, David Grant, Xiaolei Wu, Henry T. Nguyen, Gary Stacey, Yeisoo Yu, Rod A. Wing, Randy C. Shoemaker, Scott A. Jackson
Software Mentions: 3
Published: over 12 years ago

10.1111/pbi.12513

BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes
Cited by: 96
Author(s): Helena Staňková, Alex Hastie, Saki Chan, Jan Vrána, Zuzana Tulpová, Marie Kubaláková, Paul Visendi, Satomi Hayashi, Ming‐Cheng Luo, Jacqueline Batley, David Edwards, Jaroslav Doležel, Hana Šimková
Software Mentions: 3
Published: almost 9 years ago

10.1186/1471-2164-10-486

KAIKObase: An integrated silkworm genome database and data mining tool
Cited by: 114
Author(s): Michihiko Shimomura, Hiroshi Minami, Yoshitaka Suetsugu, Hajime Ohyanagi, Chikatada Satoh, Baltazar A. Antonio, Yoshiaki Nagamura, Keiko Kadono-Okuda, Hideyuki Kajiwara, Hideki Sezutsu, Javaregowda Nagaraju, Marian R. Goldsmith, Qingyou Xia, Kimiko Yamamoto, Kazuei Mita
Software Mentions: 3
Published: about 15 years ago

10.1186/s12864-016-3336-4

The unique genomic landscape surrounding the EPSPS gene in glyphosate resistant Amaranthus palmeri: a repetitive path to resistance
Cited by: 53
Author(s): William T. Molin, Alice A. Wright, Amy Lawton‐Rauh, Christopher Saski
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12864-018-4470-y

Features of the organization of bread wheat chromosome 5BS based on physical mapping
Cited by: 10
Author(s): Е. А. Салина, Mikhail A. Nesterov, Zeev Frenkel, A. A. Kiseleva, E. M. Timonova, Federica Magni, Jan Vrána, Jan Šafář, Hana Šimková, Jaroslav Doležel, Abraham B. Korol, E. M. Sergeeva
Software Mentions: 3
Published: almost 7 years ago

10.1186/1471-2164-11-692

A new implementation of high-throughput five-dimensional clone pooling strategy for BAC library screening
Cited by: 11
Author(s): Frank M. You, Ming Luo, Kenong Xu, Karin R. Deal, Olin D. Anderson, Jan Dvořák
Software Mentions: 3
Published: almost 14 years ago

10.1186/gb-2011-12-5-r48

A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure
Cited by: 30
Author(s): Andrea Zuccolo, John E. Bowers, James C. Estill, Zhiyong Xiong, Meizhong Luo, Aswathy Sebastian, José Luis Goicoechea, Kristi Collura, Yeisoo Yu, Yuannian Jiao, Jill Duarte, Haibao Tang, Saravanaraj Ayyampalayam, Steve Rounsley, Dave Kudrna, Andrew H. Paterson, J. Chris Pires, André S. Chanderbali, Douglas E. Soltis, Srikar Chamala, W. Brad Barbazuk, Pamela S. Soltis, Victor A. Albert, Hong Mā, Dina F. Mandoli, Jody A. Banks, John E. Carlson, Jeffrey Tomkins, Claude W. dePamphilis, Rod A. Wing, Jim Leebens‐Mack
Software Mentions: 2
Published: almost 14 years ago

10.1186/gb-2013-14-12-r138

The physical map of wheat chromosome 1BS provides insights into its gene space organization and evolution
Cited by: 43
Author(s): Dina Raats, Zeev Frenkel, Tamar Krugman, Itay Dodek, Hanan Sela, Hana Šimková, Federica Magni, Federica Cattonaro, Sonia Vautrin, Hélène Bergès, Thomas Wicker, Beat Keller, Philippe Leroy, Romain Philippe, Etienne Paux, Jaroslav Doležel, Catherine Feuillet, Abraham B. Korol, Tzion Fahima
Software Mentions: 2
Published: almost 12 years ago

10.1186/gb-2013-14-6-r64

A high density physical map of chromosome 1BL supports evolutionary studies, map-based cloning and sequencing in wheat
Cited by: 45
Author(s): Romain Philippe, Etienne Paux, Isabelle Bertin, Pierre Sourdille, Frédéric Choulet, Christel Laugier, Hana Šimková, Jan Šafář, Arnaud Bellec, Sonia Vautrin, Zeev Frenkel, Federica Cattonaro, Federica Magni, Simone Scalabrin, Mihaela M. Martis, Klaus Mayer, Abraham B. Korol, Hélène Bergès, Jaroslav Doležel, Catherine Feuillet
Software Mentions: 2
Published: over 11 years ago

10.1038/sdata.2016.76

Building two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data
Cited by: 30
Author(s): Jianwei Zhang, Ling Ling Chen, Shuai Sun, Dave Kudrna, Dario Copetti, Weiming Li, Ting Mu, Wen-Biao Jiao, Xing Feng, Seung‐Hee Lee, Jayson Talag, Jia‐Ming Song, Bogu Du, Weibo Xie, Meizhong Luo, Carlos Maldonado, José Luis Goicoechea, Lizhong Xiong, Changyin Wu, Yongzhong Xing, Dao‐Xiu Zhou, Sibin Yu, Yu Zhao, Gongwei Wang, Yeisoo Yu, Yufeng Luo, Beatriz Elena Padilla Hurtado, Ann Danowitz, Rod A. Wing, Qifa Zhang
Software Mentions: 2
Published: about 8 years ago

10.1186/s13039-015-0158-z

Construction of BAC contig maps of homoeologous chromosomes A12 and D12 of Gossypium hirsutum L. acc. TM-1
Cited by: 0
Author(s): Yanhui Lv, Dan Ma, Wan Liang, Yuanda Lv, Wenshan Guo, Yan Hu, Tianzhen Zhang
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-14885-w

Sub genome anchored physical frameworks of the allotetraploid Upland cotton (Gossypium hirsutum L.) genome, and an approach toward reference-grade assemblies of polyploids
Cited by: 23
Author(s): Christopher Saski, Brian E. Scheffler, Amanda M. Hulse‐Kemp, Bo Liu, Qingxin Song, Atsumi Ando, David M. Stelly, Jodi A. Scheffler, Jane Grimwood, Don C. Jones, Daniel G. Peterson, Jeremy Schmutz, Z Jeffrey Chen
Software Mentions: 2
Published: about 7 years ago

10.3390/s150613805

Interference Mitigation Schemes for Wireless Body Area Sensor Networks: A Comparative Survey
Cited by: 36
Author(s): Thien T. T. Le, Sangman Moh
Software Mentions: 2
Published: over 9 years ago

10.1111/pbi.13240

The improved assembly of 7DL chromosome provides insight into the structure and evolution of bread wheat
Cited by: 5
Author(s): Kewei Feng, Licao Cui, Le Wang, Dai Shan, Wei Tong, Pingchuan Deng, Zhaogui Yan, Mengxing Wang, Haoshuang Zhan, Xiaotong Wu, Weiming He, Xianqiang Zhou, Jingjing Ji, Guiping Zhang, Long Mao, Miroslava Karafiátová, Hana Šimková, Jaroslav Doležel, Xianghong Du, Shancen Zhao, Ming Luo, Dejun Han, Chi Zhang, Zhensheng Kang, R. Appels, David Edwards, Xiaojun Nie, Weining Song
Software Mentions: 2
Published: about 5 years ago

10.1186/1471-2164-11-395

A draft physical map of a D-genome cotton species (Gossypium raimondii)
Cited by: 47
Author(s): Lifeng Lin, Gary J. Pierce, John E. Bowers, James C. Estill, Rosana Compton, Lisa K. Rainville, Changsoo Kim, Cornelia Lemke, Junkang Rong, Haibao Tang, Xiyin Wang, Michele Braidotti, Amy H. Chen, Kristen A. Chicola, Kristi Collura, Ethan Epps, Wolfgang Golser, Corrinne E. Grover, Jennifer Ingles, Santhosh Karunakaran, Dave Kudrna, Jaime Olive, Nabila Tabassum, Eareana Um, Marina Wissotski, Yeisoo Yu, Andrea Zuccolo, Md Jamilur Rahman, Daniel G. Peterson, Rod A. Wing, Jonathan F. Wendel, Andrew H. Paterson
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0080272

A Physical Map of the Short Arm of Wheat Chromosome 1A
Cited by: 30
Author(s): James Breen, Thomas Wicker, Margarita Shatalina, Zeev Frenkel, Isabelle Bertin, Romain Philippe, Wolfgang Spielmeyer, Hana Šimková, Jan Šafář, Federica Cattonaro, Simone Scalabrin, Federica Magni, Sonia Vautrin, Hélène Berges, Etienne Paux, Tzion Fahima, Jaroslav Doležel, Abraham B. Korol, Catherine Feuillet, Beat Keller
Software Mentions: 2
Published: almost 11 years ago

10.1080/15685551.2016.1239166

Controlled grafting of vinylic monomers on polyolefins: a robust mathematical modeling approach
Cited by: 18
Author(s): Mohammad Reza Saeb, Babak Rezaee, Alireza Shadman, Krzysztof Formela, Zahed Ahmadi, Farkhondeh Hemmati, Tayebeh Sadat Kermaniyan, Yousef Mohammadi
Software Mentions: 2
Published: about 8 years ago

10.1186/1471-2164-7-227

Genomic organization and evolution of the ULBP genes in cattle
Cited by: 21
Author(s): Joshua H. Larson, Brandy M. Marron, Jonathan E. Beever, Bruce A. Roe, Harris A. Lewin
Software Mentions: 2
Published: about 18 years ago

10.1186/s12864-015-1906-5

Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials
Cited by: 60
Author(s): Ming‐Cheng Luo, Frank M. You, Pingchuan Li, Jirui Wang, Tingting Zhu, Abhaya M. Dandekar, Charles A. Leslie, Mallikarjuna K. Aradhya, Patrick E. McGuire, Jan Dvořák
Software Mentions: 2
Published: about 9 years ago

10.1186/gb-2007-8-7-r139

A high utility integrated map of the pig genome
Cited by: 134
Author(s): Sean Humphray, Carol Scott, Richard Clark, Brandy M. Marron, Clare Bender, Nick Camm, Jayne L. Davis, Andrew Jenks, Angela T. Noon, Monali Patel, Harminder Sehra, Fengtang Yang, Margarita B. Rogatcheva, Denis Milan, Patrick Chardon, G. A. Rohrer, Dan Nonneman, Pieter J. de Jong, Stacey N. Meyers, Alan Archibald, Jonathan E. Beever, Lawrence B. Schook, Jane Rogers
Software Mentions: 2
Published: almost 18 years ago

10.1371/journal.pone.0106186

Cheburator Software for Automatically Calculating Drug Inhibitory Concentrations from In Vitro Screening Assays
Cited by: 75
Author(s): Dmitry Nevozhay
Software Mentions: 2
Published: about 10 years ago

10.1186/1471-2229-8-66

A physical map of the heterozygous grapevine 'Cabernet Sauvignon' allows mapping candidate genes for disease resistance
Cited by: 57
Author(s): Marco Moroldo, Sophie Paillard, Raffaella Marconi, Fabrice Legeai, Aurélie Canaguier, Corinne Cruaud, Véronique de Berardinis, Cécile Guichard, Véronique Brunaud, Isabelle Le Clainche, Simone Scalabrin, R. Testolin, Gabriele Di Gaspero, Michèle Morgante, Anne-Françoise Adam-Blondon
Software Mentions: 2
Published: over 16 years ago

10.1186/2049-2618-2-11

CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction
Cited by: 207
Author(s): Florent E. Angly, Paul G. Dennis, Adam Skarshewski, Inka Vanwonterghem, Philip Hugenholtz, Gene W. Tyson
Software Mentions: 2
Published: over 10 years ago

10.1186/1471-2164-13-47

Whole Genome Profiling provides a robust framework for physical mapping and sequencing in the highly complex and repetitive wheat genome
Cited by: 26
Author(s): Romain Philippe, Frédéric Choulet, Etienne Paux, Jan van Oeveren, Jinyu Tang, Alexander H. J. Wittenberg, Antoine Janssen, Michiel J. T. van Eijk, Keith Stormo, Adriana Alberti, Patrick Wincker, Eduard Akhunov, Edwin van der Vossen, Catherine Feuillet
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2164-8-40

A first generation BAC-based physical map of the channel catfish genome
Cited by: 66
Author(s): Sylvie Quiniou, Geoffrey C. Waldbieser, Mary V. Duke
Software Mentions: 1
Published: almost 18 years ago

10.1186/s12864-015-1641-y

The physical map of wheat chromosome 5DS revealed gene duplications and small rearrangements
Cited by: 16
Author(s): Bala Anı Akpınar, Federica Magni, Meral Yüce, Stuart J. Lucas, Hana Šimková, Jan Šafář, Sonia Vautrin, Hélène Berges, Federica Cattonaro, Jaroslav Doležel, Hikmet Budak
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2164-12-470

A physical map of Brassica oleracea shows complexity of chromosomal changes following recursive paleopolyploidizations
Cited by: 17
Author(s): Xiyin Wang, M. Torres, Gary J. Pierce, Cornelia Lemke, Lisa K. Nelson, Bayram Yüksel, John E. Bowers, Barry S. Marler, Yongli Xiao, Lifeng Lin, Ethan Epps, Heidi Sarazen, Carl J. Rogers, Santhosh Karunakaran, Jennifer Ingles, Emily Giattina, Jeong‐Hwan Mun, Young-Joo Seol, Beom-Seok Park, Richard M. Amasino, Carlos F. Quirós, Thomas C. Osborn, J. Chris Pires, Christopher D. Town, Andrew H. Paterson
Software Mentions: 1
Published: about 13 years ago

10.1186/1471-2164-9-280

The first generation of a BAC-based physical map of Brassica rapa
Cited by: 60
Author(s): Jeong‐Hwan Mun, Soo-Jin Kwon, Tae-Jin Yang, Hye‐Sun Kim, Beom-Soon Choi, Seung-Hoon Baek, Jung Sun Kim, Mina Jin, Jin A Kim, Myung-Ho Lim, Soo In Lee, Ho-Il Kim, Hyungtae Kim, Yong Pyo Lim, Beom-Seok Park
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2164-9-108

An integrated genetic and physical map of homoeologous chromosomes 12 and 26 in Upland cotton (G. hirsutum L.)
Cited by: 33
Author(s): Zhanyou Xu, R. J. Kohel, Guoli Song, Jaemin Cho, Jing Yu, Shuang Yu, Jeffrey Tomkins, John Z. Yu
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2164-6-89

A BAC-based physical map of the Nile tilapia genome
Cited by: 78
Author(s): Takayuki Katagiri, Celeste E. Kidd, Elizabeth Tomasino, Jesse T. Davis, Cassandra Wishon, Justin E. Stern, Karen L. Carleton, Aimée E. Howe, Thomas D. Kocher
Software Mentions: 1
Published: over 19 years ago

10.1186/1471-2164-11-621

Genomic tools development for Aquilegia: construction of a BAC-based physical map
Cited by: 13
Author(s): Guang-Chen Fang, Barbara Blackmon, David C Henry, Margaret Staton, Christopher Saski, Scott A. Hodges, J. P. Tomkins, Hong Luo
Software Mentions: 1
Published: about 14 years ago

10.1186/1471-2164-10-496

A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat
Cited by: 42
Author(s): Yong Gu, Yaqin Ma, Naxin Huo, John P. Vogel, Frank M. You, Gerard R. Lazo, William M. Nelson, Carol Soderlund, Jan Dvořák, Olin D. Anderson, Ming Luo
Software Mentions: 1
Published: about 15 years ago

10.1186/1471-2164-7-12

Colour variation in red grapevines (Vitis vinifera L.): genomic organisation, expression of flavonoid 3'-hydroxylase, flavonoid 3',5'-hydroxylase genes and related metabolite profiling of red cyanidin-/blue delphinidin-based anthocyanins in berry skin
Cited by: 198
Author(s): Simone D. Castellarin, Gabriele Di Gaspero, Raffaella Marconi, Alberto Nonis, Enrico Peterlunger, Sophie Paillard, Anne-Françoise Adam-Blondon, R. Testolin
Software Mentions: 1
Published: almost 19 years ago

10.1186/1471-2164-6-50

A highly redundant BAC library of Atlantic salmon (Salmo salar): an important tool for salmon projects
Cited by: 87
Author(s): Jim Thorsen, Baoli Zhu, Eirik Frengen, Kazutoyo Osoegawa, Pieter J. de Jong, Ben F. Koop, William S. Davidson, Björn Hoyheim
Software Mentions: 1
Published: over 19 years ago

10.1186/1471-2164-11-618

Genome-wide BAC-end sequencing of Cucumis melo using two BAC libraries
Cited by: 25
Author(s): Víctor González, Luis Rodríguez‐Moreno, Emilio Centeno, Andrej Benjak, Jordi García-Más, Pere Puigdomènech, Miguel A. Aranda
Software Mentions: 1
Published: about 14 years ago

10.1186/s12864-015-1803-y

A high-resolution physical map integrating an anchored chromosome with the BAC physical maps of wheat chromosome 6B
Cited by: 17
Author(s): Fuminori Kobayashi, Jianzhong Wu, Hajime Kanamori, Tsuyoshi Tanaka, Satoshi Katagiri, Wataru Karasawa, Satoko Kaneko, Shota Watanabe, Toyotaka Sakaguchi, Yumiko Hanawa, Hideyuki Fujisawa, Kanako Kurita, Chikako Abe, Julio C. M. Iehisa, Ryoko Ohno, Jan Šafář, Hana Šimková, Yukinori Mukai, Masao Hamada, Mika Sillanpää, Goro Ishikawa, Yūichi Katayose, Takashi R. Endo, Shigeo Takumi, Toshiki Nakamura, Kazuhiro Sato, Yasunari Ogihara, Katsuyuki Hayakawa, Jaroslav Doležel, Shuhei Nasuda, Takashi Matsumoto, Hirokazu Handa
Software Mentions: 1
Published: over 9 years ago

10.1074/mcp.M115.051177

Structural Analysis of PTM Hotspots (SAPH-ire) – A Quantitative Informatics Method Enabling the Discovery of Novel Regulatory Elements in Protein Families
Cited by: 40
Author(s): Henry Dewhurst, Shilpa Choudhury, Matthew P. Torres
Software Mentions: 1
Published: over 9 years ago

10.1111/tpj.12247

Whole genome profiling physical map and ancestral annotation of tobacco <scp>H</scp> icks <scp>B</scp> roadleaf
Cited by: 28
Author(s): Nicolas Sierro, Jan van Oeveren, Michiel J. T. van Eijk, Florian Martin, Keith Stormo, Manuel C. Peitsch, Nikolai V. Ivanov
Software Mentions: 1
Published: over 11 years ago

10.1186/1746-4811-2-9

Three minimum tile paths from bacterial artificial chromosome libraries of the soybean (Glycine max cv. 'Forrest'): tools for structural and functional genomics
Cited by: 15
Author(s): Shultz Jl, Charles R. Yesudas, S. Yaegashi, Afzal Aj, Samreen Kazi, David A. Lightfoot
Software Mentions: 1
Published: over 18 years ago

10.1186/s13007-016-0107-9

An efficient approach to BAC based assembly of complex genomes
Cited by: 12
Author(s): Paul Visendi, Paul J. Berkman, Satomi Hayashi, Agnieszka A. Golicz, Philipp E. Bayer, Pradeep Ruperao, Bhavna Hurgobin, Juan D. Montenegro, Chon‐Kit Kenneth Chan, Helena Staňková, Jacqueline Batley, Hana Šimková, Jaroslav Doležel, David Edwards
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pbio.1001093

Counterfactual Choice and Learning in a Neural Network Centered on Human Lateral Frontopolar Cortex
Cited by: 168
Author(s): Erie D. Boorman, Timothy E.J. Behrens, Matthew F. S. Rushworth
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pgen.0030123

Physical and Genetic Structure of the Maize Genome Reflects Its Complex Evolutionary History
Cited by: 272
Author(s): Fusheng Wei, E. H. Coe, William M. Nelson, Arvind K. Bharti, Fred Engler, Ed Butler, Hye‐Ran Kim, José Luis Goicoechea, Mingsheng Chen, Seung‐Hee Lee, Galina Fuks, Héctor Sánchez-Villeda, Steven G. Schroeder, Zhiwei Fang, Marcia McMullen, Gregory L. Davis, John E. Bowers, Andrew H. Paterson, Mary L. Schaeffer, Jack M. Gardiner, Karen C. Cone, Joachim Messing, Carol Soderlund, Rod A. Wing
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0014351

Polyploidization Altered Gene Functions in Cotton (Gossypium spp.)
Cited by: 21
Author(s): Zhanyou Xu, John Z. Yu, Jaemin Cho, Jing Yu, R. J. Kohel, Richard G. Percy
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0161583

Whole Genome Mapping with Feature Sets from High-Throughput Sequencing Data
Cited by: 4
Author(s): Yonglong Pan, Xiaoming Wang, Lin Liu, Hao Wang, Meizhong Luo
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0033644

Genome Physical Mapping of Polyploids: A BIBAC Physical Map of Cultivated Tetraploid Cotton, Gossypium hirsutum L
Cited by: 11
Author(s): Meiping Zhang, Yang Zhang, Jianhe Huang, Xiaojun Zhang, Mi-Kyung Lee, David M. Stelly, Hongbin Zhang
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0027612

A BAC-Based Physical Map of Zhikong Scallop (Chlamys farreri Jones et Preston)
Cited by: 25
Author(s): Xiaojun Zhang, Cui Zhao, Chao Huang, Haibao Duan, Pin Huan, Xianhui Qin, Xiuying Zhang, Yang Zhang, Fuhua Li, Hongbin Zhang, Jianhai Xiang
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0059542

Physical Mapping Integrated with Syntenic Analysis to Characterize the Gene Space of the Long Arm of Wheat Chromosome 1A
Cited by: 28
Author(s): Stuart J. Lucas, Bala Anı Akpınar, Melda Kantar, Zohar B. Weinstein, Fatma Aydınoğlu, Jan Šafář, Hana Šimková, Zeev Frenkel, Abraham B. Korol, Federica Magni, Federica Cattonaro, Sonia Vautrin, Arnaud Bellec, Hélène Berges, Jaroslav Doležel, Hikmet Budak
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0100958

Avirulence Effector Discovery in a Plant Galling and Plant Parasitic Arthropod, the Hessian Fly (Mayetiola destructor)
Cited by: 51
Author(s): Rajat Aggarwal, Subhashree Subramanyam, Chaoyang Zhao, Ming‐Shun Chen, M. O. Harris, Jeffrey J. Stuart
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0013461

An Integrated Physical, Genetic and Cytogenetic Map of Brachypodium distachyon, a Model System for Grass Research
Cited by: 50
Author(s): Melanie Febrer, José Luis Goicoechea, Jonathan Wright, Neil McKenzie, Xiang Song, Juan Lin, Kristi Collura, Marina Wissotski, Yeisoo Yu, Jetty S.S. Ammiraju, Elżbieta Wolny, Dominika Idziak, Alexander Betekhtin, Dave Kudrna, Robert Hasterok, Rod A. Wing, Michael W. Bevan
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0011974

A First Generation BAC-Based Physical Map of the Asian Seabass (Lates calcarifer)
Cited by: 32
Author(s): Jun Xia, Felicia Feng, Grace Lin, Chun Ming Wang, Gen Hua Yue
Software Mentions: 1
Published: over 14 years ago

10.3389/fcimb.2013.00041

The human urinary microbiome; bacterial DNA in voided urine of asymptomatic adults
Cited by: 262
Author(s): Deborah Lewis, Richard L. Brown, Jonathan Williams, Paul White, S. Kim Jacobson, Julian R. Marchesi, Marcus Drake
Software Mentions: 1
Published: almost 12 years ago

10.3389/fpls.2015.00268

Structure, expression profile and phylogenetic inference of chalcone isomerase-like genes from the narrow-leafed lupin (Lupinus angustifolius L.) genome
Cited by: 28
Author(s): Łucja Przysiecka, Michał Książkiewicz, B. Wolko, B. Naganowska
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2019.00323

Development of a Sequence-Based Reference Physical Map of Pea (Pisum sativum L.)
Cited by: 13
Author(s): Krishna Kishore Gali, Bunyamin Tar’an, Mohammed‐Amin Madoui, Edwin van der Vossen, Jan van Oeveren, Karine Labadie, Hélène Berges, Abdelhafid Bendahmane, V. B. Reddy Lachagari, Judith Burstin, Thomas D. Warkentin
Software Mentions: 1
Published: over 5 years ago

10.1007/s10142-014-0363-6

Integrated physical, genetic and genome map of chickpea (Cicer arietinum L.)
Cited by: 46
Author(s): Rajeev K. Varshney, Reyazul Rouf Mir, Sabhyata Bhatia, Mahendar Thudi, Yuqin Hu, Sarwar Azam, Yong Zhang, Deepa Jaganathan, Frank M. You, Jinliang Gao, Oscar Riera‐Lizarazu, Ming‐Cheng Luo
Software Mentions: 1
Published: over 10 years ago

10.1534/g3.111.001099

Physical Mapping in a Triplicated Genome: Mapping the Downy Mildew Resistance Locus<i>Pp523</i>in<i>Brassica oleracea</i>L.
Cited by: 12
Author(s): Jorge Dias Carlier, Cláudia S. Alabaça, Nelson Sousa, Paula S. Coelho, António A. Monteiro, Andrew H. Paterson, José Leitão
Software Mentions: 1
Published: almost 13 years ago

10.1186/gb-2007-8-8-r165

A physical map of the bovine genome
Cited by: 79
Author(s): W. M. Snelling, Readman Chiu, Jacqueline E. Schein, Matthew Hobbs, Colette A. Abbey, David L. Adelson, Jan Aerts, G. L. Bennett, Ian Bosdet, Mekki Boussaha, Rüdiger Bräuning, Alexandre Rodrigues Caetano, Marcos Mota do Carmo Costa, A. M. Crawford, Brian P. Dalrymple, Andre A. Eggen, Annelie Everts-van der Wind, Sandrine Floriot, Mathieu Gautier, C. A. Gill, Ronnie D. Green, Robert A. Holt, O. Jann, Steven J.M. Jones, S. M. Kappes, J. W. Keele, Pieter J. de Jong, Denis M. Larkin, Harris A. Lewin, John C. McEwan, Stephanie McKay, Marco A. Marra, Carrie Mathewson, Lakshmi K. Matukumalli, S. S. Moore, Brenda M. Murdoch, F. W. Nicholas, Kazutoyo Osoegawa, Alice C. Roy, Hanni Salih, Laurent Schibler, Robert D. Schnabel, Licia Silveri, Loren C. Skow, Timothy P. L. Smith, Tad S. Sonstegard, Jeremy F. Taylor, Ross L. Tellam, Curtis P. Van Tassell, J. L. Williams, James E. Womack, Natasja Wye, George Yang, Shaying Zhao
Software Mentions: 1
Published: almost 18 years ago

10.1186/gb-2008-9-1-r21

A BAC-based integrated linkage map of the silkworm Bombyx mori
Cited by: 99
Author(s): Kimiko Yamamoto, Junko Nohata, Keiko Kadono-Okuda, Junko Narukawa, Motoe Sasanuma, Shun Ichi Sasanuma, Hiroshi Minami, Michihiko Shimomura, Yoshitaka Suetsugu, Yutaka Banno, Kazutoyo Osoegawa, Pieter J. de Jong, Marian R. Goldsmith, Kazuei Mita
Software Mentions: 1
Published: almost 17 years ago

10.1186/gb-2008-9-5-r91

Dynamic instability of the Major Urinary Protein gene family revealed by genomic and phenotypic comparisons between C57 and 129 strain mice
Cited by: 95
Author(s): Jonathan M. Mudge, Stuart D. Armstrong, Karen McLaren, Robert J. Beynon, Jane L. Hurst, Christine Nicholson, Duncan H. L. Robertson, Laurens G. Wilming, Jennifer Harrow
Software Mentions: 1
Published: almost 17 years ago

10.3390/polym11040579

Intelligent Machine Learning: Tailor-Making Macromolecules
Cited by: 18
Author(s): Yousef Mohammadi, Mohammad Reza Saeb, Alexander Penlidis, Esmaiel Jabbari, Florian J. Stadler, Philippe Zinck, Krzysztof Matyjaszewski
Software Mentions: 1
Published: over 5 years ago

10.1038/srep17394

Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement
Cited by: 125
Author(s): Jose J De Vega, Sarah Ayling, Matthew J. Hegarty, Dave Kudrna, José Luis Goicoechea, Åshild Ergon, Odd-Arne Rognli, Cerys Jones, Martin Swain, René Geurts, Chunting Lang, Klaus Mayer, Stephan Rössner, Steven Yates, K. Judith Webb, Iain S. Donnison, Giles Oldroyd, Rod A. Wing, Mario Cáccamo, W. Powell, Michael T. Abberton, Leif Skøt
Software Mentions: 1
Published: almost 9 years ago

10.3390/s151027174

Dynamic Strain Measurements on Automotive and Aeronautic Composite Components by Means of Embedded Fiber Bragg Grating Sensors
Cited by: 26
Author(s): Alfredo Lamberti, Gabriele Chiesura, Geert Luyckx, Joris Degrieck, Markus Kaufmann, Steve Vanlanduit
Software Mentions: 1
Published: about 9 years ago

10.3390/s19204540

A Convex Optimization Algorithm for Compressed Sensing in a Complex Domain: The Complex-Valued Split Bregman Method
Cited by: 8
Author(s): Kai Xiong, Guanghui Zhao, Guangming Shi, Yingbin Wang
Software Mentions: 1
Published: about 5 years ago

10.1038/s41398-020-0721-1

Identification of biological mechanisms underlying a multidimensional ASD phenotype using machine learning
Cited by: 12
Author(s): Muhammad Asif, Hugo Martiniano, Ana Rita Marques, João Xavier Santos, Joana Vilela, Célia Rasga, Guiomar Oliveira, Francisco M. Couto, Astrid M. Vicente
Software Mentions: 1
Published: almost 5 years ago

10.1155/2008/348621

Development in Rice Genome Research Based on Accurate Genome Sequence
Cited by: 8
Author(s): Takashi Matsumoto, Jianzhong Wu, Baltazar A. Antonio, Takuji Sasaki
Software Mentions: 1
Published: over 16 years ago

10.1155/2008/256597

Recent Advances in<i>Medicago truncatula</i>Genomics
Cited by: 45
Author(s): Jean‐Michel Ané, Hongyan Zhu, Julia Frugoli
Software Mentions: 1
Published: almost 16 years ago

10.1093/aob/mcy230

Integrating a newly developed BAC-based physical mapping resource for Lolium perenne with a genome-wide association study across a L. perenne European ecotype collection identifies genomic contexts associated with agriculturally important traits
Cited by: 5
Author(s): John A. Harper, Jose J De Vega, Sarat Chandra Swain, Darren Heavens, Dagmara Gasior, Ann Thomas, Caron Evans, Alan Lovatt, Sue J. Lister, Daniel Thorogood, Leif Skøt, Matthew J. Hegarty, Tina Blackmore, Dave Kudrna, Stephen Byrne, Torben Asp, W. Powell, Narcís Fernández-Fuentes, Ian Armstead
Software Mentions: 1
Published: almost 6 years ago

10.1155/2015/843717

Engaging with Families Is a Challenge: Beliefs among Healthcare Professionals in Forensic Psychiatric Care
Cited by: 6
Author(s): Ulrica Hörberg, Eva Benzein, Christen Erlingsson, Susanne Syrén
Software Mentions: 1
Published: almost 10 years ago

10.1186/1471-2105-10-217

A compartmentalized approach to the assembly of physical maps
Cited by: 4
Author(s): Serdar Bozdag, Timothy J. Close, Stefano Lonardi
Software Mentions: 1
Published: over 15 years ago

10.1186/1471-2105-11-584

LTC: a novel algorithm to improve the efficiency of contig assembly for physical mapping in complex genomes
Cited by: 37
Author(s): Zeev Frenkel, Etienne Paux, David Mester, Catherine Feuillet, Abraham B. Korol
Software Mentions: 1
Published: almost 14 years ago

10.1186/s12859-019-2962-7

MassComp, a lossless compressor for mass spectrometry data
Cited by: 7
Author(s): Ruochen Yang, Xi Chen, Idoia Ochoa
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-8-47

A BAC pooling strategy combined with PCR-based screenings in a large, highly repetitive genome enables integration of the maize genetic and physical maps
Cited by: 42
Author(s): Young Sun Yim, Patricia Moak, Héctor Sánchez-Villeda, Theresa A. Musket, Pamela Sue Close, Patricia E. Klein, John E. Mullet, Michael D. McMullen, Zheiwei Fang, Mary L. Schaeffer, Jack M. Gardiner, E. H. Coe, Gregory L. Davis
Software Mentions: 1
Published: almost 18 years ago

10.1186/1471-2164-11-501

A BAC/BIBAC-based physical map of chickpea, Cicer arietinum L
Cited by: 28
Author(s): Xiaojun Zhang, Chantel F. Scheuring, Meiping Zhang, Jennifer J. Dong, Yang Zhang, Jianhe Huang, Mi-Kyung Lee, Shahal Abbo, Amir Sherman, D. Shtienberg, Weidong Chen, F. J. Muehlbauer, Hongbin Zhang
Software Mentions: 1
Published: about 14 years ago

10.1186/s12864-015-1942-1

Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes
Cited by: 32
Author(s): Margaret Staton, Tetyana Zhebentyayeva, Bode A. Olukolu, Guang-Chen Fang, Dana D. Nelson, John E. Carlson, Albert G. Abbott
Software Mentions: 1
Published: about 9 years ago

10.1186/1471-2164-11-436

Integration of physical and genetic maps of common bean through BAC-derived microsatellite markers
Cited by: 55
Author(s): Juana Marcela Córdoba, Carolina Chavarro, Jessica A. Schlueter, Scott A. Jackson, Matthew W. Blair
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2164-12-413

A genetically anchored physical framework for Theobroma cacao cv. Matina 1-6
Cited by: 14
Author(s): Christopher Saski, F. Alex Feltus, Margaret Staton, Barbara Blackmon, Stephen P. Ficklin, David N. Kuhn, Raymond J. Schnell, Howard Shapiro, Juan Carlos Motamayor
Software Mentions: 1
Published: about 13 years ago

10.1186/1471-2164-11-122

Feasibility of physical map construction from fingerprinted bacterial artificial chromosome libraries of polyploid plant species
Cited by: 22
Author(s): Ming Luo, Yaqin Ma, Frank M. You, Olin D. Anderson, David Kopecký, Hana Šimková, Jan Šafář, Jaroslav Doležel, Bikram S. Gill, Patrick E. McGuire, Jan Dvořák
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2164-15-215

A first generation BAC-based physical map of the half-smooth tongue sole (Cynoglossus semilaevis) genome
Cited by: 12
Author(s): Junjie Zhang, Changwei Shao, Liyan Zhang, Kun Liu, Fengtao Gao, Zhongdian Dong, Peng Xu, Songlin Chen
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2164-10-462

A first generation BAC-based physical map of the rainbow trout genome
Cited by: 37
Author(s): Yniv Palti, Ming Luo, Yuqin Hu, Carine Genêt, Frank M. You, Roger L. Vallejo, Gary H. Thorgaard, Paul Wheeler, Caird E. Rexroad
Software Mentions: 1
Published: about 15 years ago

10.1186/s12864-019-5790-2

A high-density BAC physical map covering the entire MHC region of addax antelope genome
Cited by: 2
Author(s): Chaokun Li, Longxin Chen, Xuefeng Li, Xiaoqian Shi, Yu Guo, Rui Huang, Fangyuan Nie, Changming Zheng, Chenglin Zhang, Z. Runlin
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-10-293

A BAC-based physical map of the Hessian fly genome anchored to polytene chromosomes
Cited by: 19
Author(s): Rajat Aggarwal, Thiago Romanos Benatti, Navdeep Gill, Chaoyang Zhao, Ming‐Shun Chen, John P. Fellers, Brandon J. Schemerhorn, Jeffrey J. Stuart
Software Mentions: 1
Published: over 15 years ago

10.1186/1471-2164-12-594

A hybrid BAC physical map of potato: a framework for sequencing a heterozygous genome
Cited by: 13
Author(s): J.M. de Boer, Theo Borm, Taco Jesse, Bart Brugmans, Xiaomin Tang, Glenn J. Bryan, J. Bakker, Herman J. van Eck, R.G.F. Visser
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2164-11-382

Physical mapping of a large plant genome using global high-information-content-fingerprinting: the distal region of the wheat ancestor Aegilops tauschii chromosome 3DS
Cited by: 13
Author(s): Delphine Fleury, Ming Luo, Jan Dvořák, Luke Ramsay, Bikram S. Gill, Olin D. Anderson, Frank M. You, Zahra Shoaei, Karin R. Deal, Peter Langridge
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2164-12-247

BAC library resources for map-based cloning and physical map construction in barley (Hordeum vulgare L.)
Cited by: 51
Author(s): Daniela Schulte, Ruvini Ariyadasa, Bu‐Jun Shi, Delphine Fleury, Chris Saski, Michael B. Atkins, Pieter J. deJong, Chun-Ta Wu, Andreas Graner, Peter Langridge, Nils Stein
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2164-11-339

Generation of a BAC-based physical map of the melon genome
Cited by: 31
Author(s): Víctor González, Jordi García-Más, Pere Arús, Pere Puigdomènech
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2164-14-883

A BAC based physical map and genome survey of the rice false smut fungus Villosiclava virens
Cited by: 10
Author(s): Xiaoming Wang, Qingli Liu, Hao Wang, Chaoxi Luo, Gejiao Wang, Meizhong Luo
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2164-11-204

Physical mapping in highly heterozygous genomes: a physical contig map of the Pinot Noir grapevine cultivar
Cited by: 15
Author(s): Simone Scalabrin, Michela Troggio, Marco Moroldo, Massimo Pindo, Nicoletta Felice, G. Coppola, Giacomo Prete, G. Malacarne, Raffaella Marconi, Giorgia Faes, Irena Jurman, S. Grando, Taco Jesse, C. Segala, Giorgio Valle, Alberto Policriti, Paolo Fontana, Michèle Morgante, Riccardo Velasco
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2164-12-421

The tammar wallaby major histocompatibility complex shows evidence of past genomic instability
Cited by: 38
Author(s): Hannah V. Siddle, Janine E. Deakin, Penny Coggill, Laurens G Whilming, Jennifer Harrow, Jim Kaufman, Stephan Beck, Katherine Belov
Software Mentions: 1
Published: about 13 years ago

10.1186/1471-2164-14-250

Conserved microstructure of the Brassica B Genome of Brassica nigra in relation to homologous regions of Arabidopsis thaliana, B. rapa and B. oleracea
Cited by: 42
Author(s): Zahra-Katy Navabi, Terry Huebert, Andrew Sharpe, Carmel M. O’Neill, Ian Bancroft, Isobel A. P. Parkin
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2164-12-537

Generation of the first BAC-based physical map of the common carp genome
Cited by: 37
Author(s): Peng Xu, Jian Wang, Jintu Wang, Runzi Cui, Yan Li, Zixia Zhao, Peifeng Ji, Yan Zhang, Jiong-Tang Li, Xin Sun
Software Mentions: 1
Published: about 13 years ago