cran: GUniFrac | Projects | Ecosyste.ms: Papers

10.7717/peerj.2836

Rhea: a transparent and modular R pipeline for microbial profiling based on 16S rRNA gene amplicons
Cited by: 273
Author(s): Ilias Lagkouvardos, Sandra E. Fischer, Neeraj Kumar, Thomas Clavel
Software Mentions: 20
Published: almost 8 years ago

10.1186/s40168-020-00961-3

Whole microbial community viability is not quantitatively reflected by propidium monoazide sequencing approach
Cited by: 30
Author(s): Wang Ya, Yan Yan, Kelsey N. Thompson, Sena Bae, Emma K. Accorsi, Yancong Zhang, Jiaxian Shen, Hera Vlamakis, Erica M. Hartmann, Curtis Huttenhower
Software Mentions: 15
Published: almost 4 years ago

10.3390/biomedicines9020144

Dietary Rice Bran-Modified Human Gut Microbial Consortia Confers Protection against Colon Carcinogenesis Following Fecal Transfaunation
Cited by: 19
Author(s): Kristopher D. Parker, Akhilendra Kumar Maurya, Hend Ibrahim, Sangeeta Rao, Petronella R. Hove, Dileep Kumar, Rama Kant, B. L. Raina, Rajesh Agarwal, Kristine A. Kuhn, Komal Raina, Elizabeth P. Ryan
Software Mentions: 15
Published: almost 4 years ago

10.3390/ani10071151

Tenebrio molitor Larvae Meal Affects the Cecal Microbiota of Growing Pigs
Cited by: 8
Author(s): Sandra De Meyer, Denise K. Geßner, Garima Maheshwari, Julia Röhrig, Theresa Friedhoff, Erika Most, Holger Zorn, Robert Ringseis, Klaus Eder
Software Mentions: 14
Published: over 4 years ago

10.1007/s00248-020-01635-1

Microbial Key Players Involved in P Turnover Differ in Artificial Soil Mixtures Depending on Clay Mineral Composition
Cited by: 12
Author(s): Irina Tanuwidjaja, Cordula Vogel, Geertje Johanna Pronk, Anne Schöler, Susanne Kublik, Gisle Vestergaard, Ingrid Kögel‐Knabner, Mirna Mrkonjić Fuka, Michael Schloter, Stefanie Schulz
Software Mentions: 13
Published: about 4 years ago

10.1038/s41598-018-23518-9

The effects of host species and sexual dimorphism differ among root, leaf and flower microbiomes of wild strawberries in situ
Cited by: 47
Author(s): Na Wei, Tia‐Lynn Ashman
Software Mentions: 11
Published: over 6 years ago

10.1155/2019/3717239

Primary Production in the Water Column as Major Structuring Element of the Biogeographical Distribution and Function of Archaea in Deep-Sea Sediments of the Central Pacific Ocean
Cited by: 9
Author(s): Franziska Wemheuer, Avril Jean Elisabeth von Hoyningen-Huene, Marion Pohlner, Julius Degenhardt, Bert Engelen, Rolf Daniel, Bernd Wemheuer
Software Mentions: 9
Published: almost 6 years ago

10.1186/s40168-018-0535-z

High-resolution ISR amplicon sequencing reveals personalized oral microbiome
Cited by: 30
Author(s): Chiranjit Mukherjee, Clifford J. Beall, Ann L. Griffen, Eugene J. Leys
Software Mentions: 9
Published: over 6 years ago

10.1038/s41598-019-50540-2

Deciphering bacterial and fungal endophyte communities in leaves of two maple trees with green islands
Cited by: 23
Author(s): Franziska Wemheuer, Bernd Wemheuer, Rolf Daniel, Stefan Vidal
Software Mentions: 9
Published: about 5 years ago

10.1038/s41598-020-57612-8

Long-term Proton Pump Inhibitor Administration Caused Physiological and Microbiota Changes in Rats
Cited by: 26
Author(s): Yuxing Yang, Hsuen-Wen Chang, I-Hsuan Lin, Li‐Nien Chien, Min-Ju Wu, Yun‐Ru Liu, Peiguo Chu, Guoxiang Xie, Fangcong Dong, Jia Wang, Vincent H.S. Chang, Yun Yen
Software Mentions: 8
Published: almost 5 years ago

10.1186/s40168-018-0468-6

Multilevel social structure and diet shape the gut microbiota of the gelada monkey, the only grazing primate
Cited by: 44
Author(s): Pål Trosvik, Eric J. de Muinck, Eli Knispel Rueness, Peter J. Fashing, Evan C. Beierschmitt, Kadie R. Callingham, Jacob B. Kraus, Thomas H. Trew, Amera Moges, Addisu Mekonnen, Vivek V. Venkataraman, Nga Nguyen
Software Mentions: 8
Published: over 6 years ago

10.7717/peerj.5319

Comparative chemical analysis of army ant mandibular gland volatiles (Formicidae: Dorylinae)
Cited by: 11
Author(s): Adrian Brückner, Philipp O. Hoenle, Christoph von Beeren
Software Mentions: 7
Published: over 6 years ago

10.1186/s40168-016-0167-0

Microbial succession in an inflated lunar/Mars analog habitat during a 30-day human occupation
Cited by: 28
Author(s): Teresa Mayer, Adriana Blachowicz, Alexander J. Probst, Parag Vaishampayan, Aleksandra Checinska, Tiffany M. Swarmer, Pablo de León, Kasthuri Venkateswaran
Software Mentions: 7
Published: over 8 years ago

10.1128/mBio.03701-20

Inter- and Intra-Annual Bacterioplankton Community Patterns in a Deepwater Sub-Arctic Region: Persistent High Background Abundance of Putative Oil Degraders
Cited by: 8
Author(s): Angelina Angelova, Barbara Berx, Eileen Bresnan, Samantha B. Joye, Andrew Free, Tony Gutiérrez
Software Mentions: 7
Published: over 3 years ago

10.1128/mSystems.00066-18

Microbial Community Cohesion Mediates Community Turnover in Unperturbed Aquifers
Cited by: 53
Author(s): Robert Danczak, Michael D. Johnston, Chris Kenah, Michael T. Slattery, Michael J. Wilkins
Software Mentions: 7
Published: over 6 years ago

10.1186/s40168-015-0116-3

Microbiomes of the dust particles collected from the International Space Station and Spacecraft Assembly Facilities
Cited by: 151
Author(s): Aleksandra Checinska, Alexander J. Probst, Parag Vaishampayan, James R. White, Deepika Kumar, В. П. Степанов, George E. Fox, R. Henrik Nilsson, Duane L. Pierson, Jay L. Perry, Kasthuri Venkateswaran
Software Mentions: 7
Published: about 9 years ago

10.1186/s40168-017-0280-8

Human presence impacts fungal diversity of inflated lunar/Mars analog habitat
Cited by: 23
Author(s): Adriana Blachowicz, Teresa Mayer, Mina Bashir, Thomas R. Pieber, Pablo de León, Kasthuri Venkateswaran
Software Mentions: 7
Published: over 7 years ago

10.1038/srep40914

Bacterial endophyte communities of three agricultural important grass species differ in their response towards management regimes
Cited by: 69
Author(s): Franziska Wemheuer, Kristin Kaiser, Petr Karlovský, Rolf Daniel, Stefan Vidal, Bernd Wemheuer
Software Mentions: 7
Published: almost 8 years ago

10.1038/s41598-017-15220-z

Captive bottlenose dolphins and killer whales harbor a species-specific skin microbiota that varies among individuals
Cited by: 28
Author(s): Marlène Chiarello, Sébastien Villéger, Corinne Bouvier, Jean‐Christophe Auguet, Thierry Bouvier
Software Mentions: 7
Published: about 7 years ago

10.3390/microorganisms5040068

Linking Compositional and Functional Predictions to Decipher the Biogeochemical Significance in DFAA Turnover of Abundant Bacterioplankton Lineages in the North Sea
Cited by: 16
Author(s): Bernd Wemheuer, Franziska Wemheuer, Dimitri V. Meier, Sara Billerbeck, Helge-Ansgar Giebel, Meinhard Simon, Christoph Scherber, Rolf Daniel
Software Mentions: 7
Published: about 7 years ago

10.1038/ismej.2017.197

Microbial life on a sand grain: from bulk sediment to single grains
Cited by: 79
Author(s): David Probandt, Thilo Eickhorst, Andreas Ellrott, Rudolf Amann, Katrin Knittel
Software Mentions: 7
Published: about 7 years ago

10.3389/fmicb.2017.01379

Cutaneous Microbial Community Variation across Populations of Eastern Hellbenders (Cryptobranchus alleganiensis alleganiensis)
Cited by: 25
Author(s): Obed Hernández‐Gómez, Jason T. Hoverman, Rod N. Williams
Software Mentions: 6
Published: over 7 years ago

10.1038/s41598-018-23989-w

A large-scale survey of the postmortem human microbiome, and its potential to provide insight into the living health condition
Cited by: 90
Author(s): Jennifer L. Pechal, Carl J. Schmidt, Heather R. Jordan, M. Eric Benbow
Software Mentions: 6
Published: over 6 years ago

10.1128/AEM.02421-18

Superior Dispersal Ability Can Lead to Persistent Ecological Dominance throughout Succession
Cited by: 9
Author(s): Primrose J. Boynton, Celeste Peterson, Anne Pringle
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0223600

Suppression treatment differentially influences the microbial community and the occurrence of broad host range plasmids in the rhizosphere of the model cover crop Avena sativa L.
Cited by: 9
Author(s): Marco Allegrini, Emma Laura Alfaro Gómez, Kornelia Smalla, María Celina Zabaloy
Software Mentions: 6
Published: about 5 years ago

10.1128/mSystems.00232-18

Reevaluating the Salty Divide: Phylogenetic Specificity of Transitions between Marine and Freshwater Systems
Cited by: 31
Author(s): Sara F. Paver, Daniel Muratore, Ryan J. Newton, Maureen L. Coleman
Software Mentions: 6
Published: about 6 years ago

10.1038/s41597-019-0172-9

Bacterial succession along a sediment porewater gradient at Lake Neusiedl in Austria
Cited by: 20
Author(s): Avril Jean Elisabeth von Hoyningen-Huene, Dominik Schneider, Dario Fussmann, Andreas Reimer, Gernot Arp, Rolf Daniel
Software Mentions: 6
Published: over 5 years ago

10.1128/mSystems.00097-18

Is Host Filtering the Main Driver of Phylosymbiosis across the Tree of Life?
Cited by: 108
Author(s): Florent Mazel, Katherine M. Davis, Andrew H. Loudon, Waldan K. Kwong, Mathieu Groussin, Laura Wegener Parfrey
Software Mentions: 6
Published: about 6 years ago

10.1128/mSystems.00344-21

Network Properties of Local Fungal Communities Reveal the Anthropogenic Disturbance Consequences of Farming Practices in Vineyard Soils
Cited by: 10
Author(s): Rüdiger Ortiz‐Álvarez, Héctor Ortega-Arranz, Vicente J. Ontiveros, Miguel de Celis, Charles N. J. Ravarani, Alberto Acedo, Ignacio Belda
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0184515

Unraveling the human salivary microbiome diversity in Indian populations
Cited by: 19
Author(s): Anujit Sarkar, Mark Stoneking, Madhusudan R. Nandineni
Software Mentions: 5
Published: over 7 years ago

10.3390/brainsci11081085

Maternal Immune Activation Causes Social Behavior Deficits and Hypomyelination in Male Rat Offspring with an Autism-Like Microbiota Profile
Cited by: 29
Author(s): Gilbert Lee, Yen Kuang Lin, Jing Lai, Yu Chun Lo, Yu Yang, Syuan You Ye, Chia-Jung Lee, Ching Chiung Wang, Yung Hsiao Chiang, Sung Hui Tseng
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-018-29687-x

Gut microbiota is associated with obesity and cardiometabolic disease in a population in the midst of Westernization
Cited by: 68
Author(s): Jacobo de la Cuesta-Zuluaga, Vanessa Corrales-Agudelo, Eliana P. Velásquez-Mejía, Jenny Andrea Carmona, José M. Abad, Juan S. Escobar
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2016.02012

16S Based Microbiome Analysis from Healthy Subjects’ Skin Swabs Stored for Different Storage Periods Reveal Phylum to Genus Level Changes
Cited by: 45
Author(s): Ingeborg Klymiuk, Isabella Bambach, V. Patra, Slave Trajanoski, Peter Wolf
Software Mentions: 5
Published: about 8 years ago

10.3389/fmicb.2019.01116

Dynamic Alterations in Yak Rumen Bacteria Community and Metabolome Characteristics in Response to Feed Type
Cited by: 116
Author(s): Chang Liu, Hao Wu, Shujie Liu, Shatuo Chai, Qingxiang Meng, Zhenming Zhou
Software Mentions: 5
Published: over 5 years ago

10.1186/s40168-021-01058-1

Microbiomes of clownfish and their symbiotic host anemone converge before their first physical contact
Cited by: 7
Author(s): Émie Audet‐Gilbert, François‐Étienne Sylvain, Sidki Bouslama, Nicolas Derôme
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-018-28550-3

Analysis of the Gut Microbiome of Rural and Urban Healthy Indians Living in Sea Level and High Altitude Areas
Cited by: 92
Author(s): Bhabatosh Das, Tarini Shankar Ghosh, Saurabh Kedia, Ritika Rampal, Shruti Saxena, Satyabrata Bag, Ridhima Mitra, Mayanka Dayal, Ojasvi Mehta, Adarsh Surendranath, Simon Travis, Prabhanshu Tripathi, G. Balakrish Nair, Vineet Ahuja
Software Mentions: 4
Published: over 6 years ago

10.1186/s40168-018-0518-0

Bacterial microbiota protect an invasive bark beetle from a pine defensive compound
Cited by: 47
Author(s): Chihang Cheng, Jacob D. Wickham, Li Chen, Dandan Xu, Min Lü, Jianghua Sun
Software Mentions: 4
Published: over 6 years ago

10.1186/s40168-017-0337-8

More than 2500 years of oil exposure shape sediment microbiomes with the potential for syntrophic degradation of hydrocarbons linked to methanogenesis
Cited by: 22
Author(s): Antonios Michas, Gisle Vestergaard, Kathleen Trautwein, Pavlos Avramidis, Dimitris G. Hatzinikolaou, Constantinos E. Vorgias, Heinz Wilkes, Ralf Rabus, Michael Schloter, Anne Schöler
Software Mentions: 4
Published: over 7 years ago

10.1128/mSphere.00560-17

Systematic Bias Introduced by Genomic DNA Template Dilution in 16S rRNA Gene-Targeted Microbiota Profiling in Human Stool Homogenates
Cited by: 17
Author(s): Francesco Multinu, Sean C. Harrington, Jun Chen, Patricio Jeraldo, Stephen Johnson, Nicholas Chia, Marina Walther-Antonio
Software Mentions: 4
Published: over 6 years ago

10.3389/fphys.2021.668645

A Holistic Assessment of Polyethylene Fiber Ingestion in Larval and Juvenile Japanese Medaka Fish
Cited by: 4
Author(s): Elizabeth DiBona, Lee J. Pinnell, Annika Heising-Huang, Simon Joscha Geist, John Turner, Frauke Seemann
Software Mentions: 4
Published: over 3 years ago

10.1186/s12986-020-00538-9

Combined Lycium barbarum polysaccharides and C-phycocyanin increase gastric Bifidobacterium relative abundance and protect against gastric ulcer caused by aspirin in rats
Cited by: 14
Author(s): Shu-Yu Hsieh, Yu Lian, I‐Hsuan Lin, Yuxing Yang, Alexey A. Tinkov, Anatoly V. Skalny, Jane C.-J. Chao
Software Mentions: 4
Published: almost 4 years ago

10.7717/peerj.8168

Resident microbes of lactation rooms and daycares
Cited by: 1
Author(s): Diana H. Taft, Samir Akre, Nicolas Madrid, A. Knoesen, David A. Mills, Zachery T. Lewis
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2020.01305

Seasonal Dynamics of Pelagic Mycoplanktonic Communities: Interplay of Taxon Abundance, Temporal Occurrence, and Biotic Interactions
Cited by: 21
Author(s): Stefanos Banos, Deisy Morselli Gysi, Tim Richter-Heitmann, Frank Oliver Glöckner, Maarten Boersma, Karen Helen Wiltshire, Gunnar Gerdts, Antje Wichels, M. Reich
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2021.682989

Microbiome and Metabolomics Reveal the Effects of Different Feeding Systems on the Growth and Ruminal Development of Yaks
Cited by: 26
Author(s): Chun Hua Huang, Fei Ge, Xixi Yao, Xian Guo, Pengjia Bao, Xiaoming Ma, Xiaoyun Wu, Min Kyung Chu, Ping Yan, Chunnian Liang
Software Mentions: 4
Published: over 3 years ago

10.3389/fmicb.2017.02550

The Biogeographical Distribution of Benthic Roseobacter Group Members along a Pacific Transect Is Structured by Nutrient Availability within the Sediments and Primary Production in Different Oceanic Provinces
Cited by: 20
Author(s): Marion Pohlner, Julius Degenhardt, Avril Jean Elisabeth von Hoyningen-Huene, Bernd Wemheuer, Nora Erlmann, Bernhard Schnetger, Thomas H. Badewien, Bert Engelen
Software Mentions: 4
Published: about 7 years ago

10.3390/nu12102938

Diet Quality, Food Groups and Nutrients Associated with the Gut Microbiota in a Nonwestern Population
Cited by: 17
Author(s): Ángela S García-Vega, Vanessa Corrales-Agudelo, Alejandro Reyes, Juan S. Escobar
Software Mentions: 4
Published: about 4 years ago

10.1093/conphys/coaa040

A novel bioaugmentation technique effectively increases the skin-associated microbial diversity of captive eastern hellbenders
Cited by: 3
Author(s): Erin K. Kenison, Obed Hernández‐Gómez, Rod N. Williams
Software Mentions: 4
Published: almost 5 years ago

10.1186/s13071-019-3517-5

Surface sterilization methods impact measures of internal microbial diversity in ticks
Cited by: 65
Author(s): Florian Binetruy, Marlène Dupraz, Marie Buysse, Olivier Duron
Software Mentions: 3
Published: over 5 years ago

10.3390/ani9090599

Effects of Land Transport Stress on Variations in Ruminal Microbe Diversity and Immune Functions in Different Breeds of Cattle
Cited by: 20
Author(s): Fengpeng Li, Ali Mujtaba Shah, Zhisheng Wang, Quanhui Peng, Rui Hu, Huawei Zou, Cui Tan, Xiangfei Zhang, Yupeng Liao, Yongjie Wang, Xueying Wang, Lingping Zeng, Bai Xue, Lizhi Wang
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pbio.2000689

The enteric nervous system promotes intestinal health by constraining microbiota composition
Cited by: 118
Author(s): Annah S. Rolig, Erika Mittge, Julia Ganz, Josh V. Troll, Ellie Melançon, Travis J. Wiles, Kristin Alligood, W. Zac Stephens, Judith S Eisen, Karen Guillemin
Software Mentions: 3
Published: almost 8 years ago

10.18632/oncotarget.21921

Bacteriome and mycobiome associations in oral tongue cancer
Cited by: 75
Author(s): Pranab K. Mukherjee, Hannah Wang, Mauricio Retuerto, Huan Zhang, Brian B. Burkey, Mahmoud A. Ghannoum, Charis Eng
Software Mentions: 3
Published: about 7 years ago

10.1007/s00248-016-0834-5

A Global eDNA Comparison of Freshwater Bacterioplankton Assemblages Focusing on Large-River Floodplain Lakes of Brazil
Cited by: 15
Author(s): Michael Tessler, Mercer R. Brugler, Rob DeSalle, Rebecca Hersch, Luiz Felipe Machado Velho, Bianca Trevizan Segóvia, Fábio Amodêo Lansac‐Tôha, Michael Lemke
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0161196

Expanding the UniFrac Toolbox
Cited by: 51
Author(s): Ruth G. Wong, Jia Rong Wu, Gregory B. Gloor
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0158170

Taxonomic and Phylogenetic Determinants of Functional Composition of Bolivian Bat Assemblages
Cited by: 16
Author(s): Luís F. Aguirre, Flavia Montaño‐Centellas, María Mercedes Gavilánez, Richard D. Stevens
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-019-55028-7

Gut Microbiota in Children With Cystic Fibrosis: A Taxonomic and Functional Dysbiosis
Cited by: 66
Author(s): Michael J. Coffey, Shaun Nielsen, Bernd Wemheuer, Nadeem O. Kaakoush, Millie Garg, Bronwen Needham, Russell Pickford, Adam Jaffé, Torsten Thomas, Chee Y. Ooi
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0173029

Exploring gastric bacterial community in young pigs
Cited by: 8
Author(s): Vincenzo Motta, Paolo Trevisi, Francesca Bertolini, Anisa Ribani, Giuseppina Schiavo, Luca Fontanesi, Paolo Bosi
Software Mentions: 3
Published: almost 8 years ago

10.3390/ijms17111734

Pine Defensive Monoterpene α-Pinene Influences the Feeding Behavior of Dendroctonus valens and Its Gut Bacterial Community Structure
Cited by: 33
Author(s): Letian Xu, Zhanghong Shi, Bo Wang, Min Lü, Sun Jian
Software Mentions: 3
Published: about 8 years ago

10.1038/ismej.2015.245

Shifts in diversity and function of lake bacterial communities upon glacier retreat
Cited by: 80
Author(s): Hannes Peter, Rubén Sommaruga
Software Mentions: 3
Published: almost 9 years ago

10.3389/fmicb.2018.00579

Typical Soil Redox Processes in Pentachlorophenol Polluted Soil Following Biochar Addition
Cited by: 24
Author(s): Min Zhu, Lujun Zhang, Zheng Lu, Ying Zhuo, Jianming Xu, Yan He
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2021.640469

Mycoplankton Biome Structure and Assemblage Processes Differ Along a Transect From the Elbe River Down to the River Plume and the Adjacent Marine Waters
Cited by: 7
Author(s): Yanyan Yang, Stefanos Banos, Gunnar Gerdts, Antje Wichels, M. Reich
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2018.01251

Gut Bacterial Communities of Dendroctonus valens and Monoterpenes and Carbohydrates of Pinus tabuliformis at Different Attack Densities to Host Pines
Cited by: 7
Author(s): Dandan Xu, Letian Xu, Fangyuan Zhou, Bo Wang, Shanshan Wang, Min Lü, Jianghua Sun
Software Mentions: 3
Published: over 6 years ago

10.1080/19490976.2021.1882926

Ethnic variability associating gut and oral microbiome with obesity in children
Cited by: 18
Author(s): Baskar Balakrishnan, Vaithinathan Selvaraju, Jun Chen, Priscilla Ayine, Lu Yang, Jeganathan Ramesh Babu, Thangiah Geetha, Veena Taneja
Software Mentions: 3
Published: almost 4 years ago

10.1186/s42523-020-00048-2

Seasonal dynamics and starvation impact on the gut microbiome of urochordate ascidian Halocynthia roretzi
Cited by: 13
Author(s): Jiankai Wei, Hongwei Gao, Yang Yang, Haiming Liu, Haiyan Yu, Zigui Chen, Bo Dong
Software Mentions: 3
Published: over 4 years ago

10.7717/peerj.11806

Influenza A virus infection in turkeys induces respiratory and enteric bacterial dysbiosis correlating with cytokine gene expression
Cited by: 2
Author(s): John M. Ngunjiri, Kara Taylor, Hana Ji, Michael C. Abundo, Amir Ghorbani, Mahesh Kc, Chang-Won Lee
Software Mentions: 3
Published: over 3 years ago

10.1289/EHP158

Urban Dust Microbiome: Impact on Later Atopy and Wheezing
Cited by: 40
Author(s): Christina Tischer, Fabian Weikl, Alexander J. Probst, Marie Standl, Joachim Heinrich, Karin Pritsch
Software Mentions: 2
Published: about 8 years ago

10.1128/AEM.02283-19

Neutral Processes Dominate Microbial Community Assembly in Atlantic Salmon, <i>Salmo salar</i>
Cited by: 53
Author(s): Chloe Heys, Bachar Cheaib, Alessandro Busetti, Raminta Kazlauskaite, Liliana Maier, William T. Sloan, Umer Zeeshan Ijaz, Joshka Kaufmann, P. McGinnity, Martin S. Llewellyn
Software Mentions: 2
Published: over 4 years ago

10.1186/s40168-020-00834-9

A powerful microbial group association test based on the higher criticism analysis for sparse microbial association signals
Cited by: 8
Author(s): Hyunwook Koh, Ni Zhao
Software Mentions: 2
Published: over 4 years ago

10.3390/microorganisms7100410

Temporal Dynamics in Rumen Bacterial Community Composition of Finishing Steers during an Adaptation Period of Three Months
Cited by: 22
Author(s): Qinghua Qiu, Chaoyu Gao, Zhibiao Gao, MA Rahman, Yang He, Binghai Cao, Huawei Su
Software Mentions: 2
Published: about 5 years ago

10.3390/microorganisms8060845

Anti-Inflammatory and Gut Microbiota Modulatory Effect of Lactobacillus rhamnosus Strain LDTM 7511 in a Dextran Sulfate Sodium-Induced Colitis Murine Model
Cited by: 20
Author(s): Soyoung Yeo, Hyunjoon Park, Eunsol Seo, Jihee Kim, Byoung Kook Kim, In Suk Choi, Chul Sung Huh
Software Mentions: 2
Published: over 4 years ago

10.3390/microorganisms8060933

Environmental Factors, More Than Spatial Distance, Explain Community Structure of Soil Ammonia-Oxidizers in Wetlands on the Qinghai–Tibetan Plateau
Cited by: 12
Author(s): Wen Zhou, Xiaoliang Jiang, Jian Ouyang, Bei Lü, Wenzhi Liu, Guihua Liu
Software Mentions: 2
Published: over 4 years ago

10.1080/21501203.2020.1799878

Fungal diversity in deep-sea sediments from the Magellan seamounts as revealed by a metabarcoding approach targeting the ITS2 regions
Cited by: 15
Author(s): Yao Luo, Wei Xü, Shuai Yang, Yuelin Gao, Zengwei Luo
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0154131

Fungal and Bacterial Communities in Indoor Dust Follow Different Environmental Determinants
Cited by: 80
Author(s): Fabian Weikl, Christina Tischer, Alexander J. Probst, Joachim Heinrich, Iana Markevych, Susanne Jochner, Karin Pritsch
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0192391

The effect of bio-irrigation by the polychaete Lanice conchilega on active denitrifiers: Distribution, diversity and composition of nosZ gene
Cited by: 11
Author(s): Maryam Yazdani Foshtomi, Frédérik Leliaert, Sofie Derycke, Anne Willems, Magda Vincx, Jan Vanaverbeke
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0199947

Minor taxa in human skin microbiome contribute to the personal identification
Cited by: 25
Author(s): Hikaru Watanabe, Issei Nakamura, Sayaka Mizutani, Yumiko Kurokawa, Hiroshi Mori, Ken Kurokawa, Takuji Yamada
Software Mentions: 2
Published: over 6 years ago

10.1038/srep45134

The influence of environmental factors on communities of arbuscular mycorrhizal fungi associated with Chenopodium ambrosioides revealed by MiSeq sequencing investigation
Cited by: 64
Author(s): Xihui Xu, Chen Chen, Zhou Zhang, Zehua Sun, Yahua Chen, Jiandong Jiang, Zhenguo Shen
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-018-23634-6

Elucidation of the bacterial communities associated with the harmful microalgae Alexandrium tamarense and Cochlodinium polykrikoides using nanopore sequencing
Cited by: 42
Author(s): HyeonSeok Shin, Eun‐Ju Lee, Jisoo Shin, So-Ra Ko, Hyung-Seok Oh, Chi‐Yong Ahn, Hee‐Mock Oh, Byung-Kwan Cho, Suhyung Cho
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-69295-2

NOD1 deficiency promotes an imbalance of thyroid hormones and microbiota homeostasis in mice fed high fat diet
Cited by: 13
Author(s): Silvia González-Ramos, Marta Paz-García, Victoria Fernández-García, Kevin J. Portune, Emilio Felino Acosta-Medina, Yolanda Sanz, Antonio Castrillo, Paloma Martı́n-Sanz, Marı́a Jesús Obregón, Lisardo Boscá
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-021-90888-y

Bacteroides uniformis CECT 7771 alleviates inflammation within the gut-adipose tissue axis involving TLR5 signaling in obese mice
Cited by: 27
Author(s): Emanuel Fabersani, Kevin J. Portune, Isabel Campillo, Inmaculada López-Almela, Sergio Montserrat‐de la Paz, Marina Romaní-Pérez, Alfonso Benı́tez-Páez, Yolanda Sanz
Software Mentions: 2
Published: over 3 years ago

10.1515/biol-2019-0032

Comparative analysis of gut microbiota among the male, female and pregnant giant pandas (Ailuropoda Melanoleuca)
Cited by: 3
Author(s): Sumei Zhao, Caiwu Li, Li Guo, Sheng Yang, Yingming Zhou, Yongguo He, Daifu Wu, Yu Zhou, Wen Zeng, Ti Li, Yuanyuan Qu, Bei Li, Wenwen Deng, Lan Jin, Xiumei Yu, Yan Huang, Hemin Zhang, Likou Zou
Software Mentions: 2
Published: over 5 years ago

10.3390/nu11010051

Higher Fecal Short-Chain Fatty Acid Levels Are Associated with Gut Microbiome Dysbiosis, Obesity, Hypertension and Cardiometabolic Disease Risk Factors
Cited by: 280
Author(s): Jacobo de la Cuesta-Zuluaga, Noel T. Mueller, Rafael Álvarez-Quintero, Eliana P. Velásquez-Mejía, Jelver A. Sierra, Vanessa Corrales-Agudelo, Jenny Andrea Carmona, José M. Abad, Juan S. Escobar
Software Mentions: 2
Published: almost 6 years ago

10.1038/srep44385

Sensitivity to oxazolone induced dermatitis is transferable with gut microbiota in mice
Cited by: 46
Author(s): Line Fisker Zachariassen, Łukasz Krych, Kåre Engkilde, Dennis Sandris Nielsen, Witold Kot, Camilla Hartmann Friis Hansen, Axel Kornerup Hansen
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2021.746046

Selenium Nanoparticles as an Innovative Selenium Fertilizer Exert Less Disturbance to Soil Microorganisms
Cited by: 8
Author(s): Liu Jun, Wen-Yu Qi, Hui Chen, Chao Song, Qiang Li, Shuguang Wang
Software Mentions: 1
Published: over 3 years ago

10.3389/fcimb.2020.498502

Microbial Community Profiling Distinguishes Left-Sided and Right-Sided Colon Cancer
Cited by: 17
Author(s): Min Zhong, Yubo Xiong, Zhijian Ye, Jiabao Zhao, Lifeng Zhong, Yu Liu, Yuekun Zhu, Lantian Tian, Xingfeng Qiu, Xuehui Hong
Software Mentions: 1
Published: about 4 years ago

10.1155/2018/6093282

Gut Microbiota Play an Essential Role in the Antidiabetic Effects of Rhein
Cited by: 15
Author(s): Ruifeng Wang, Pu Zhang, Junxiu Chen, Fei Wu, Zhouqin Zheng, Jing Ma, Chengquan Yang, Hong Du
Software Mentions: 1
Published: over 6 years ago

10.1016/j.ajog.2019.08.008

Impact of oral metronidazole treatment on the vaginal microbiota and correlates of treatment failure
Cited by: 49
Author(s): Marijn C. Verwijs, Stephen Agaba, Alistair C. Darby, Janneke van de Wijgert
Software Mentions: 1
Published: almost 5 years ago

10.1002/ece3.5087

“Balancing” balancing selection? Assortative mating at the major histocompatibility complex despite molecular signatures of balancing selection
Cited by: 8
Author(s): Joel W. G. Slade, Matthew J. Watson, Elizabeth A. MacDougall‐Shackleton
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0066019

Archaea and Fungi of the Human Gut Microbiome: Correlations with Diet and Bacterial Residents
Cited by: 582
Author(s): Christian Hoffmann, Serena Dollive, Stephanie Grunberg, Jun Chen, Hongzhe Li, Gary D. Wu, James D. Lewis, Frederic D. Bushman
Software Mentions: 1
Published: over 11 years ago

10.1186/s12866-019-1658-5

Severe gut microbiota dysbiosis caused by malnourishment can be partly restored during 3 weeks of refeeding with fortified corn-soy-blend in a piglet model of childhood malnutrition
Cited by: 6
Author(s): Bingfeng Leng, Maria Bornakke Sørensen, Witold Kot, Thomas Thymann, Łukasz Krych, Dennis Sandris Nielsen
Software Mentions: 1
Published: about 5 years ago

10.7717/peerj.7910

Effects of particle size of ground alfalfa hay on caecal bacteria and archaea populations of rabbits
Cited by: 2
Author(s): Ming Yuan, Siqiang Liu, Zhisheng Wang, Lizhi Wang, Bai Xue, Huawei Zou, Gang Tian, Jingyi Cai, Quanhui Peng
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-018-31438-x

The use of random forests modelling to detect yeast-mannan sensitive bacterial changes in the broiler cecum
Cited by: 6
Author(s): A. Corrigan, Nathan T. Russell, Michael Welge, Loretta Auvil, Colleen Bushell, Bryan A. White, Richard Murphy
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-017-12109-9

Effect of caloric restriction on gut permeability, inflammation markers, and fecal microbiota in obese women
Cited by: 111
Author(s): Ott B, Thomas Skurk, Ljiljana Hastreiter, Ilias Lagkouvardos, Sandra E. Fischer, Janine Büttner, Teresa Kellerer, Thomas Clavel, Michael Rychlik, Dirk Haller, Hans Hauner
Software Mentions: 1
Published: over 7 years ago

Projects: cran: GUniFrac

Papers Mentioning GUniFrac 91