Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/s41598-020-57612-8

https://doi.org/10.1038/s41598-020-57612-8

Cited by: 26
Author(s): Yuxing Yang, Hsuen-Wen Chang, I-Hsuan Lin, Li‐Nien Chien, Min-Ju Wu, Yun‐Ru Liu, Peiguo Chu, Guoxiang Xie, Fangcong Dong, Jia Wang, Vincent H.S. Chang, Yun Yen
Published: over 4 years ago

Software Mentions 8

bioconductor: ComplexHeatmap
Make Complex Heatmaps
Papers that mentioned: 565
bioconductor: ConsensusClusterPlus
ConsensusClusterPlus
Papers that mentioned: 313
bioconductor: DECIPHER
Tools for curating, analyzing, and manipulating biological sequences
Papers that mentioned: 415
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: GUniFrac
Generalized UniFrac Distances, Distance-Based Multivariate Methods and Feature-Based Univariate Methods for Microbiome Data Analysis
Papers that mentioned: 91
cran: phangorn
Phylogenetic Reconstruction and Analysis
Papers that mentioned: 192
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562