Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: Benchling
https://packages.ecosyste.ms/registries/pypi.org/packages/Benchling
1 version
Latest release: about 1 year ago
Papers Mentioning Benchling 83
10.1038/s42003-020-1097-8
CD70 expression determines the therapeutic efficacy of expanded human regulatory T cellsCited by: 30
Author(s): Rebeca Arroyo Hornero, Christos Georgiadis, Peng Hua, Dominik Trzupek, He L-Z., Waseem Qasim, John A. Todd, Ricardo C. Ferreira, Kathryn J. Wood, Fadi Issa, Joanna Hester
Software Mentions: 8
Published: over 4 years ago
10.1371/journal.pgen.1009385
Split versions of Cleave and Rescue selfish genetic elements for measured self limiting gene driveCited by: 19
Author(s): Georg Oberhofer, Tobin Ivy, Bruce A. Hay
Software Mentions: 7
Published: over 3 years ago
10.1080/15592294.2019.1710913
A regulatory role for CHD2 in myelopoiesisCited by: 5
Author(s): Farzaneh Shahin Varnoosfaderani, Anna M. Palau, Wenbo Dong, Jenna Persson, Mickaël Durand-Dubief, J. Peter Svensson, Andreas Lennartsson
Software Mentions: 5
Published: almost 5 years ago
10.1371/journal.pone.0244439
The peptide symporter SLC15a4 is essential for the development of systemic lupus erythematosus in murine modelsCited by: 14
Author(s): Arna Katewa, Eric Suto, Jessica Hui, Jose Heredia, Jie Liang, Jason A. Hackney, Keith R. Anderson, Tuija Alcantar, Natasha Bacarro, Debra Dunlap, Jeffrey Eastham, Andrés Paler-Martı́nez, Xin Y. Rairdan, Zora Modrušan, Wyne P. Lee, Cary D. Austin, Daniel Lafkas, Nico Ghilardi
Software Mentions: 5
Published: almost 4 years ago
10.3390/cells9051288
Computational Tools and Resources Supporting CRISPR-Cas ExperimentsCited by: 34
Author(s): Paweł Śledziński, Mateusz Nowaczyk, Marta Olejniczak
Software Mentions: 5
Published: over 4 years ago
10.1371/journal.pone.0227724
Gut-derived Flavonifractor species variants are differentially enriched during in vitro incubation with quercetinCited by: 6
Author(s): Gina Paola Rodriguez-Castaño, Federico E. Rey, Alejandro Caro‐Quintero, Alejandro Acosta-González
Software Mentions: 4
Published: almost 4 years ago
10.1038/s41598-019-39142-0
Unlocking HDR-mediated nucleotide editing by identifying high-efficiency target sites using machine learningCited by: 30
Author(s): Aidan O’Brien, Laurence O.W. Wilson, Gaétan Burgio, Denis C. Bauer
Software Mentions: 4
Published: over 5 years ago
10.1126/sciadv.abc4493
Regeneration of the pulmonary vascular endothelium after viral pneumonia requires COUP-TF2Cited by: 25
Author(s): Gan Zhao, Aaron I. Weiner, Katherine M. Neupauer, Maria Fernanda de Mello Costa, Gargi Palashikar, Stephanie Adams-Tzivelekidis, Nilam S. Mangalmurti, Andrew E. Vaughan
Software Mentions: 3
Published: almost 4 years ago
10.1186/s12866-020-01770-2
Bacteriophage genotyping using BOXA repetitive-PCRCited by: 1
Author(s): Dragica Damnjanović, Xabier Vázquez-Campos, Daniel L. Winter, M. Harvey, Wallace Bridge
Software Mentions: 3
Published: over 4 years ago
10.1093/synbio/ysz016
Better research by efficient sharing: evaluation of free management platforms for synthetic biology designsCited by: 8
Author(s): Uriel Urquiza-García, Tomasz Zieliński, Andrew J. Millar
Software Mentions: 3
Published: almost 6 years ago
10.1016/j.meteno.2016.05.003
Molecular Cloning Designer Simulator (MCDS): All-in-one molecular cloning and genetic engineering design, simulation and management software for complex synthetic biology and metabolic engineering projectsCited by: 5
Author(s): Zhenyu Shi, Claudia E. Vickers
Software Mentions: 2
Published: almost 8 years ago
10.1128/AEM.02762-20
Harnessing CRISPR-Cas9 for Genome Editing in Streptococcus pneumoniae D39VCited by: 6
Author(s): Dimitra Synefiaridou, Jan‐Willem Veening
Software Mentions: 2
Published: over 3 years ago
10.1016/j.omtn.2021.08.015
CRISPR-Cas9 correction of OPA1 c.1334G>A: p.R445H restores mitochondrial homeostasis in dominant optic atrophy patient-derived iPSCsCited by: 18
Author(s): Paul Edward Sladen, Pedro R.L. Perdigão, Grace Salsbury, Tatiana Novoselova, Jacqueline van der Spuy, J. Paul Chapple, Patrick Yu‐Wai‐Man, Michael E. Cheetham
Software Mentions: 2
Published: almost 3 years ago
10.18699/VJ20.643
Study of the effect of the introduction of mitochondrial import determinants into the gRNA structure on the activity of the gRNA/SpCas9 complex in vitroCited by: 1
Author(s): Elvira G Zakirova, Yuri Vyatkin, N Verechshagina, Vladimir Vladimirovich Muzyka, И. О. Мазунин, Кonstantin E. Orishchenko
Software Mentions: 2
Published: about 4 years ago
10.1371/journal.pone.0227994
Are the current gRNA ranking prediction algorithms useful for genome editing in plants?Cited by: 44
Author(s): Narjis Fatima, Kylie Shand, Satomi Hayashi, Martin O’Brien, Louise M Burrell, Alexander Johnson, Benjamin Dugdale, Peter M. Waterhouse
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pone.0223935
Repository-based plasmid designCited by: 6
Author(s): Joshua J. Timmons, Doug Densmore
Software Mentions: 2
Published: almost 5 years ago
10.3390/cancers12082047
The Tumor Suppressor CYLD Inhibits Mammary Epithelial to Mesenchymal Transition by the Coordinated Inhibition of YAP/TAZ and TGFβ SignalingCited by: 9
Author(s): Athanasios Pseftogas, Konstantinos Xanthopoulos, Theofilos Poutahidis, Chrysanthi Ainali, Dimitra Dafou, Emmanuel Panteris, Joseph G. Kern, Xaralabos Varelas, Alexandros Hardas, Christos Gonidas, Anastasia Tsingotjidou, Eudoxia Hatzivassiliou, George Mosialos
Software Mentions: 2
Published: over 4 years ago
10.1186/s40694-021-00111-w
Preservation stress resistance of melanin deficient conidia from Paecilomyces variotii and Penicillium roqueforti mutants generated via CRISPR/Cas9 genome editingCited by: 17
Author(s): Sjoerd J Seekles, Pepijn P. P. Teunisse, Maarten Punt, Tom van den Brule, Jan Dijksterhuis, Jos Houbraken, Han A. B. Wösten, Arthur F. J. Ram
Software Mentions: 2
Published: over 3 years ago
10.1016/j.xpro.2020.100084
A Protocol to Engineer Bacteriophages for Live-Cell Imaging of Bacterial Prophage Induction Inside Mammalian CellsCited by: 2
Author(s): Katie Bodner, Arin L. Melkonian, Markus W. Covert
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-021-85218-1
Pseudomonas fluorescens F113 type VI secretion systems mediate bacterial killing and adaption to the rhizosphere microbiomeCited by: 24
Author(s): David Durán, Patricia Bernal, David Vazquez-Arias, Esther Blanco-Romero, Daniel Garrido‐Sanz, Miguel Redondo‐Nieto, Rafael Rivilla, Marta Martín
Software Mentions: 2
Published: over 3 years ago
10.1128/mSphereDirect.00149-17
An Efficient, Rapid, and Recyclable System for CRISPR-Mediated Genome Editing in Candida albicansCited by: 78
Author(s): Namkha Nguyen, Morgan M. Quail, Aaron D. Hernday
Software Mentions: 2
Published: over 7 years ago
10.7554/eLife.56075
Srsf10 and the minor spliceosome control tissue-specific and dynamic SR protein expressionCited by: 16
Author(s): Stefan Meinke, Gesine Goldammer, A Ioana Weber, Victor Tarabykin, Alexander Neumann, Marco Preußner
Software Mentions: 2
Published: over 4 years ago
10.21105/joss.01915
alignparse: A Python package for parsing complex features from high-throughput long-read sequencingCited by: 21
Author(s): Katharine H.D. Crawford, Jesse D. Bloom
Software Mentions: 2
Published: almost 5 years ago
10.3390/cancers13133233
Inhibition of miR-222 by Oncolytic Adenovirus-Encoded miRNA Sponges Promotes Viral Oncolysis and Elicits Antitumor Effects in Pancreatic Cancer ModelsCited by: 8
Author(s): Giulia Raimondi, Sabrina Gea‐Sorlí, Marc Otero-Mateo, Cristina Fillat
Software Mentions: 1
Published: over 3 years ago
10.3390/cancers12102798
Cx43 and Associated Cell Signaling Pathways Regulate Tunneling Nanotubes in Breast Cancer CellsCited by: 24
Author(s): Alexander Tishchenko, Daniel Azorín, Laia Vidal-Brime, María José Muñoz, Pol Jiménez Arenas, Christopher Pearce, Henrique Girão, Santiago Ramón y Cajal, Trond Aasen
Software Mentions: 1
Published: about 4 years ago
10.1186/s12964-019-0473-9
RNA sequencing reveals an additional Crz1-binding motif in promoters of its target genes in the human fungal pathogen Candida albicansCited by: 44
Author(s): Huihui Xu, Tianshu Fang, Raha Parvizi Omran, Malcolm Whiteway, Lijing Jiang
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41419-018-1255-9
Lamin B is a target for selective nuclear PQC by BAG3: implication for nuclear envelopathiesCited by: 8
Author(s): Manish Kumar Gupta, Jennifer Gordon, Gregory Glauser, Valerie D. Myers, Arthur M. Feldman, Joseph Y. Cheung, Kamel Khalili
Software Mentions: 1
Published: almost 6 years ago
10.3390/cells10061312
Assessing the Anti-Inflammatory Activity of the Anxiolytic Drug Buspirone Using CRISPR-Cas9 Gene Editing in LPS-Stimulated BV-2 Microglial CellsCited by: 13
Author(s): Sarah Thomas Broome, Teagan Fisher, Alen Faiz, Kevin A. Keay, Giuseppe Musumeci, Ghaith Al-Badri, Alessandro Castorina
Software Mentions: 1
Published: over 3 years ago
10.1093/bfgp/elz012
Cutting back malaria: CRISPR/Cas9 genome editing of PlasmodiumCited by: 34
Author(s): Marcus Lee, Scott E. Lindner, José-Juan Lopez-Rubio, Manuel Llinás
Software Mentions: 1
Published: over 5 years ago
10.1002/ctm2.261
Knockdown of lactate dehydrogenase by adeno‐associated virus‐delivered CRISPR/Cas9 system alleviates primary hyperoxaluria type 1Cited by: 18
Author(s): Rui Zheng, Xiaoliang Fang, Xi Chen, Yunteng Huang, Guofeng Xu, Lei He, Yueyan Li, Xuran Niu, Lei Yang, Liren Wang, Dali Li, Hui Geng
Software Mentions: 1
Published: almost 4 years ago
10.1042/BSR20204243
Generation of <i>APOE</i> knock-down SK-N-SH human neuroblastoma cells using CRISPR/Cas9: a novel cellular model relevant to Alzheimer’s disease researchCited by: 4
Author(s): Sonia Sanz Muñoz, Brett Garner, Lezanne Ooi
Software Mentions: 1
Published: almost 4 years ago
10.1016/j.cub.2018.09.059
Two Interlinked Bistable Switches Govern Mitotic Control in Mammalian CellsCited by: 56
Author(s): Scott Rata, Maria F. Suarez Peredo Rodriguez, Stephy Joseph, Nisha Peter, Fabio Echegaray Iturra, Fengwei Yang, Anotida Madzvamuse, Jan Gustav Ruppert, Kumiko Samejima, Melpomeni Platani, Mónica Álvarez-Fernández, Marcos Malumbres, William C. Earnshaw, Béla Novák, Helfrid Hochegger
Software Mentions: 1
Published: almost 6 years ago
10.1242/dmm.040972
Impaired neural differentiation and glymphatic CSF flow in the <i>Ccdc39</i> rat model of neonatal hydrocephalus: genetic interaction with <i>L1cam</i>Cited by: 19
Author(s): Andrea Emmert, Eri Iwasawa, Crystal Shula, Preston A Schultz, Diana M. Lindquist, Richard S. Dunn, Elizabeth M. Fugate, Yueh-Chiang Hu, Francesco T. Mangano, June Goto
Software Mentions: 1
Published: about 5 years ago
10.1242/bio.027771
MCAM contributes to the establishment of cell autonomous polarity in myogenic and chondrogenic differentiationCited by: 5
Author(s): Artal Moreno-Fortuny, Laricia Bragg, Giulio Cossu, Urmas Roostalu
Software Mentions: 1
Published: almost 8 years ago
10.1038/s12276-019-0295-2
Exosomal PD-L1 promotes tumor growth through immune escape in non-small cell lung cancerCited by: 180
Author(s): Dong Ha Kim, Hyeong Ryul Kim, Yun Jung Choi, Seon Ye Kim, Jung Eun Lee, Kyung Jeh Sung, Young Hoon Sung, Chan Gi Pack, Min Kyo Jung, Byoung Hee Han, Kunhee Kim, Woo Sung Kim, Soo Jeong Nam, Chang Choi, Miyong Yun, Jae Cheol Lee, Jin Kyung Rho
Software Mentions: 1
Published: over 5 years ago
10.1093/femsyr/fox030
CRISPR/Cas system for yeast genome engineering: advances and applicationsCited by: 134
Author(s): Vratislav Šťovíček, Carina Holkenbrink, Irina Borodina
Software Mentions: 1
Published: over 7 years ago
10.3389/fbioe.2020.00945
Yarrowia lipolytica Strains Engineered for the Production of TerpenoidsCited by: 41
Author(s): Jonathan Asmund Arnesen, Kanchana Rueksomtawin Kildegaard, Marc Cernuda Pastor, Sidharth Jayachandran, Mette Kristensen, Irina Borodina
Software Mentions: 1
Published: about 4 years ago
10.3389/fbioe.2020.601704
Hydrogels for 3D Neural Tissue Models: Understanding Cell-Material Interactions at a Molecular LevelCited by: 15
Author(s): Catalina Vallejo-Giraldo, Martina Genta, Olivia Cauvi, Josef Goding, Rylie A. Green
Software Mentions: 1
Published: almost 4 years ago
10.3389/fbioe.2021.623278
CRISPR/Cas9 Ribonucleoprotein-Based Genome Editing Methodology in the Marine Protozoan Parasite Perkinsus marinusCited by: 5
Author(s): Raghavendra Yadavalli, Kousuke Umeda, Hannah A Waugh, Adrienne N. Tracy, Asha Sidhu, Derek E Hernández, José A. Fernández Robledo
Software Mentions: 1
Published: over 3 years ago
10.3389/fbioe.2019.00018
Improving Reproducibility in Synthetic BiologyCited by: 57
Author(s): Mathew M Jessop-Fabre, Nikolaus Sonnenschein
Software Mentions: 1
Published: over 5 years ago
10.3389/fcimb.2021.618994
Auranofin Resistance in Toxoplasma gondii Decreases the Accumulation of Reactive Oxygen Species but Does Not Target Parasite Thioredoxin ReductaseCited by: 8
Author(s): I. Christopher, James A. Tirtorahardjo, Sharon Jan, Sakura S. Schweizer, Shawn A. C. Rosario, Yanmiao Du, Jerry J Zhang, Naomi S. Morrissette, Rosa Andrade
Software Mentions: 1
Published: over 3 years ago
10.3389/fimmu.2017.01535
The Human-Associated Archaeon Methanosphaera stadtmanae Is Recognized through Its RNA and Induces TLR8-Dependent NLRP3 Inflammasome ActivationCited by: 55
Author(s): Tim Vierbuchen, Corinna Bang, Hanna Rosigkeit, Ruth A. Schmitz, Holger Heine
Software Mentions: 1
Published: almost 7 years ago
10.3389/fimmu.2021.722181
Rapid Characterization of Complex Killer Cell Immunoglobulin-Like Receptor (KIR) Regions Using Cas9 Enrichment and Nanopore SequencingCited by: 12
Author(s): Jesse Bruijnesteijn, Marit van der Wiel, Natasja G. de Groot, Ronald E. Bontrop
Software Mentions: 1
Published: about 3 years ago
10.3389/fimmu.2019.00998
CTLA4 Message Reflects Pathway Disruption in Monogenic Disorders and Under Therapeutic BlockadeCited by: 9
Author(s): Josselyn E. Garcia-Perez, Ryan M. Baxter, Daniel S. Kong, Richard P. Tobin, Martin D. McCarter, John M. Routes, James Verbsky, Michael B. Jordan, Cullen M. Dutmer, Elena W.Y. Hsieh
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2018.01226
A Novel Tomato Fusarium Wilt Tolerance GeneCited by: 54
Author(s): Cahya Prihatna, Martin J. Barbetti, Susan J. Barker
Software Mentions: 1
Published: over 6 years ago
10.3389/fmolb.2020.00010
DETECTing Merkel Cell Polyomavirus in Merkel TumorsCited by: 5
Author(s): Reety Arora, Komal Gupta, Anjali Vijaykumar, Sudhir Krishna
Software Mentions: 1
Published: almost 5 years ago
10.3389/fnana.2016.00081
The Intracellular Signaling Molecule Darpp-32 Is a Marker for Principal Neurons in the Cerebellum and Cerebellum-Like Circuits of ZebrafishCited by: 3
Author(s): Lena Robra, Vatsala Thirumalai
Software Mentions: 1
Published: over 8 years ago
10.3389/fonc.2019.01461
Linking NRP2 With EMT and Chemoradioresistance in Bladder CancerCited by: 18
Author(s): Alexander Schulz, Ielizaveta Gorodetska, Rayk Behrendt, Susanne Fuessel, Kati Erdmann, Sarah Foerster, Kaustubh Datta, Thomas Mayr, Anna Dubrovska, Michael H. Muders
Software Mentions: 1
Published: almost 5 years ago
10.3389/fpls.2018.00740
Optimizing CRISPR/Cas9 for the Diatom Phaeodactylum tricornutumCited by: 57
Author(s): Daniel Stukenberg, Stefan Zauner, Gianluca Dell’Aquila, Uwe G. Maier
Software Mentions: 1
Published: over 6 years ago
10.7554/eLife.43999
Genetic dissection of the different roles of hypothalamic kisspeptin neurons in regulating female reproductionCited by: 47
Author(s): Luhong Wang, Charlotte Vanacker, Laura L. Burger, Tammy M. Barnes, Yatrik M. Shah, Martin G. Myers, Suzanne M. Moenter
Software Mentions: 1
Published: over 5 years ago
10.1534/g3.116.038091
Highly Efficient Cpf1-Mediated Gene Targeting in Mice Following High Concentration Pronuclear InjectionCited by: 24
Author(s): Dawn E. Watkins‐Chow, Gaurav K. Varshney, Lisa Garrett, Zelin Chen, Elvira Jimenez, Cecilia Rivas, Kevin Bishop, William J. Pavan, Shawn M. Burgess
Software Mentions: 1
Published: almost 8 years ago
10.3390/genes12030439
Characterization of Two Ethephon-Induced IDA-Like Genes from Mango, and Elucidation of Their Involvement in Regulating Organ AbscissionCited by: 8
Author(s): Avinash Chandra, Eyal Halon, Hanita Zemach, Tali Zviran, Isaac Sisai, Sonia Philosoph‐Hadas, Shimon Meir, Yuval Cohen, Vered Irihimovitch
Software Mentions: 1
Published: over 3 years ago
10.1016/j.jbc.2021.100500
A polysaccharide utilization locus from the gut bacterium Dysgonomonas mossii encodes functionally distinct carbohydrate esterasesCited by: 17
Author(s): Cathleen Kmezik, Scott Mazurkewich, Tomke Meents, Lauren S. McKee, Alexander Idström, Marina Armeni, Otto Savolainen, Gisela Brändén, Johan Larsbrink
Software Mentions: 1
Published: almost 4 years ago
10.1186/s13036-017-0061-8
Streamlining recombination-mediated genetic engineering by validating three neutral integration sites in Synechococcus sp. PCC 7002Cited by: 20
Author(s): Anne Ilse Maria Vogel, Rahmi Lale, Martin F. Hohmann‐Marriott
Software Mentions: 1
Published: over 7 years ago
10.1083/jcb.202103176
Pex30-like proteins function as adaptors at distinct ER membrane contact sitesCited by: 13
Author(s): Joana Veríssimo Ferreira, Pedro Carvalho
Software Mentions: 1
Published: about 3 years ago
10.1016/j.redox.2020.101800
The role of glutamate oxaloacetate transaminases in sulfite biosynthesis and H2S metabolismCited by: 17
Author(s): Anna-Theresa Mellis, Albert L. Misko, Sita Arjune, Ye Liang, Katalin Erdélyi, Tamás Ditrói, Alexander Tobias Kaczmarek, Péter Nagy, Günter Schwarz
Software Mentions: 1
Published: almost 4 years ago
10.1111/resp.13960
Acute cigarette smoke‐induced <scp>eQTL</scp> affects formyl peptide receptor expression and lung functionCited by: 6
Author(s): Simon D. Pouwels, Valerie R. Wiersma, Immeke Fokkema, Marijn Berg, Nick H. T. ten Hacken, Maarten van den Berge, Irene H. Heijink, Alen Faiz
Software Mentions: 1
Published: about 4 years ago
10.7554/eLife.45248
Glycosylphosphatidylinositol biosynthesis and remodeling are required for neural tube closure, heart development, and cranial neural crest cell survivalCited by: 16
Author(s): Marshall Lukacs, Tia Roberts, Praneet Chatuverdi, Rolf W. Stottmann
Software Mentions: 1
Published: over 5 years ago
10.1002/bmb.21395
“<i>Designer babies</i>?!” A <scp>CRISPR</scp>‐based learning module for undergraduates built around the <scp><i>CCR5</i></scp> geneCited by: 2
Author(s): Jay N. Pieczynski, H. Lynn Kee
Software Mentions: 1
Published: about 4 years ago
10.1038/srep25611
A Retroviral CRISPR-Cas9 System for Cellular Autism-Associated Phenotype Discovery in Developing NeuronsCited by: 35
Author(s): Michael R. Williams, Catherine J. Fricano-Kugler, Stephanie A. Getz, Patrick D. Skelton, Jeong-Hoon Lee, Christian P. Rizzuto, Joseph S. Geller, Meijie Li, Bryan W. Luikart
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-017-16279-4
Towards personalised allele-specific CRISPR gene editing to treat autosomal dominant disordersCited by: 58
Author(s): Kathleen A. Christie, David Courtney, Larry DeDionisio, Connie Chao-Shern, Shyamasree De Majumdar, Laura Mairs, M. Andrew Nesbit, Tara Moore
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41598-019-38732-2
Knockout rat models mimicking human atherosclerosis created by Cpf1-mediated gene targetingCited by: 29
Author(s): Jong Geol Lee, Chang Hoon Ha, Bo-Hyun Yoon, Seung-A Cheong, Globinna Kim, Dong Hoon Lee, Dong‐Cheol Woo, Young–Hak Kim, Sang-Yoon Nam, Sangwook Lee, Young Hoon Sung, In-Jeoung Baek
Software Mentions: 1
Published: over 5 years ago
10.1016/j.anaerobe.2019.102074
Phosphorylation and functionality of CdtR in Clostridium difficileCited by: 9
Author(s): Terry W. Bilverstone, Nigel P. Minton, Sarah A. Kuehne
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-020-64047-8
Tagging enhances histochemical and biochemical detection of Ran Binding Protein 9 in vivo and reveals its interaction with NucleolinCited by: 3
Author(s): Shimaa Soliman, Aaron E. Stark, Miranda L. Gardner, Sean W. Harshman, Chelssie C. Breece, Foued Amari, Arturo Orlacchio, Min Chen, Anna Tessari, Jennifer A. Martin, Rosa Visone, Michael A. Freitas, Krista M. D. La Perle, Dario Palmieri, Vincenzo Coppola
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-72040-4
Generation of myostatin edited horse embryos using CRISPR/Cas9 technology and somatic cell nuclear transferCited by: 15
Author(s): Lucía Moro, Diego L. Viale, Juan Ignacio Bastón, Victoria Arnold, M. Suvá, Elisabet Astrid Wiedenmann, Martín Olguín, Santiago Gabriel Miriuka, G. Vichera
Software Mentions: 1
Published: about 4 years ago
10.3390/ijms22158069
Mouse Models of Achromatopsia in Addressing Temporal “Point of No Return” in Gene-TherapyCited by: 3
Author(s): Nan-Kai Wang, Pei-Kang Liu, Yang Kong, Sarah R. Levi, Wenmin Huang, Chun‐Wei Hsu, Hung-Hsi Wang, Nelson Chen, Yun-Ju Tseng, Peter M J Quinn, Ming‐Hong Tai, Chyuan‐Sheng Lin, Stephen H. Tsang
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-86490-x
Sensitivity of cells to ATR and CHK1 inhibitors requires hyperactivation of CDK2 rather than endogenous replication stress or ATM dysfunctionCited by: 8
Author(s): Jennifer Ditano, Katelyn L. Donahue, Laura J. Tafe, Charlotte F. McCleery, Alan Eastman
Software Mentions: 1
Published: over 3 years ago
10.1186/s13287-019-1520-6
Genetic tool for fate mapping of Oct4 (Pou5f1)-expressing cells and their progeny past the pluripotency stageCited by: 5
Author(s): Andrey A. Kuzmin, Veronika V. Ermakova, Sergey Sinenko, Sergey V. Ponomartsev, T. Yu. Starkova, Elena V. Skvortsova, Olga A. Cherepanova, Alexey Tomilin
Software Mentions: 1
Published: almost 5 years ago
10.1016/j.anaerobe.2019.06.020
A novel conjugal donor strain for improved DNA transfer into Clostridium spp.Cited by: 29
Author(s): Craig Woods, Christopher M. Humphreys, Raquel Rodrigues, Patrick Ingle, Peter Rowe, Anne M. Henstra, Michael Kӧpke, Séan D. Simpson, Klaus Winzer, Nigel P. Minton
Software Mentions: 1
Published: about 5 years ago
10.1093/synbio/ysy020
The Synthetic Genome Summer CourseCited by: 0
Author(s): Benjamin A. Blount, Tom Ellis
Software Mentions: 1
Published: almost 7 years ago
10.1093/synbio/ysz014
PartCrafter: find, generate and analyze BioPartsCited by: 1
Author(s): Emily Scher, Shay B. Cohen, Guido Sanguinetti
Software Mentions: 1
Published: almost 6 years ago
10.3390/ijms21103604
On-Target CRISPR/Cas9 Activity Can Cause Undesigned Large Deletion in Mouse ZygotesCited by: 29
Author(s): Alexey Korablev, Varvara Lukyanchikova, Irina Serova, Nariman Battulin
Software Mentions: 1
Published: over 4 years ago
10.1128/mSphere.00598-18
MAP Kinase Regulation of the Candida albicans Pheromone PathwayCited by: 4
Author(s): Golnaz Rastghalam, Raha Parvizi Omran, Masoumeh Alizadeh, Debrah Fulton, Jaideep Mallick, Malcolm Whiteway
Software Mentions: 1
Published: over 5 years ago
10.2196/resprot.9285
Facilitating Web-Based Collaboration in Evidence Synthesis (TaskExchange): Development and AnalysisCited by: 3
Author(s): Tari Turner, Emily Steele, Chris Mavergames, Julian Elliott, T. Ensembl Team
Software Mentions: 1
Published: almost 6 years ago
10.3390/plants9101360
Improving Horticultural Crops via CRISPR/Cas9: Current Successes and ProspectsCited by: 13
Author(s): Bed Prakash Bhatta, Subas Malla
Software Mentions: 1
Published: about 4 years ago
10.3390/v12101154
Targeted Chromatinization and Repression of HIV-1 Provirus Transcription with Repurposed CRISPR/Cas9Cited by: 15
Author(s): Alex Olson, Binita Basukala, Seung‐Hee Lee, Matthew Gagné, Wilson Wong, Andrew J. Henderson
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pone.0200660
Mild hydrostatic pressure triggers oxidative responses in Escherichia coliCited by: 9
Author(s): Aurélie Guyet, Martyn Dade‐Robertson, Anil Wipat, John Casement, William Thomas Lingwood Smith, Helen Mitrani, Meng Zhang
Software Mentions: 1
Published: over 6 years ago
10.1021/acssuschemeng.1c01165
Engineering the Turnover Stability of Cellobiose Dehydrogenase toward Long-Term Bioelectronic ApplicationsCited by: 11
Author(s): Andreas F. Geiss, Thomas Reichhart, Barbara Pejker, Esther Plattner, Peter L. Herzog, Christopher Schulz, Roland Ludwig, Alfons K. G. Felice, Dietmar Haltrich
Software Mentions: 1
Published: over 3 years ago
10.1038/s41388-018-0332-y
PDLIM7 and CDH18 regulate the turnover of MDM2 during CDK4/6 inhibitor therapy-induced senescenceCited by: 35
Author(s): Mary E. Klein, Mark A. Dickson, Cristina R. Antonescu, Li‐Xuan Qin, Scott J. Dooley, Afsar Barlas, Katia Manova, Gary K. Schwartz, Aimeé M. Crago, Samuel Singer, Andrew Koff, William D. Tap
Software Mentions: 1
Published: over 6 years ago
10.1128/jmbe.00114-21
Stay-on-Task Exercises as a Tool To Maintain Focus during a CRISPR CURECited by: 0
Author(s): Ben A. Evans, Ethan S. Pickerill, Douglas A. Bernstein
Software Mentions: 1
Published: over 3 years ago
10.1186/s40170-019-0197-8
Epithelial to mesenchymal transition (EMT) is associated with attenuation of succinate dehydrogenase (SDH) in breast cancer through reduced expression of SDHCCited by: 47
Author(s): Gro Vatne Røsland, Sissel E. Dyrstad, Deusdedit Tusubira, Reham Helwa, Tuan Zea Tan, Maria Lie Lotsberg, Ina Katrine Nitschke Pettersen, Ansgar Berg, Charlotte Kindt, Fredrik Hoel, Kirstine Jacobsen, Ari Jón Arason, Agnete S.T. Engelsen, Henrik J. Ditzel, Per Eystein Lønning, Camilla Krakstad, Jean Paul Thiéry, James B. Lorens, Stian Knappskog, Karl Johan Tronstad
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0234635
Genome sequence analysis of a Helicoverpa armigera single nucleopolyhedrovirus (HearNPV-TR) isolated from Heliothis peltigera in TurkeyCited by: 4
Author(s): Gözde Büşra Eroğlu, Cihan İnan, Remziye Nalçacıoğlu, Zihni Demırbag
Software Mentions: 1
Published: over 4 years ago
10.7554/eLife.45829
Rapid and iterative genome editing in the malaria parasite Plasmodium knowlesi provides new tools for P. vivax researchCited by: 56
Author(s): Franziska Mohring, Melissa N. Hart, Thomas A. Rawlinson, Ryan C. Henrici, James Charleston, Ernest Diez Benavente, Avnish Patel, Jo Hall, Neil Almond, Susana Campino, Taane G. Clark, Colin J. Sutherland, David A. Baker, Simon J. Draper, Robert W. Moon
Software Mentions: 1
Published: over 5 years ago