Ecosyste.ms: Papers

10.1038/s42003-020-1097-8

CD70 expression determines the therapeutic efficacy of expanded human regulatory T cells
Cited by: 30
Author(s): Rebeca Arroyo Hornero, Christos Georgiadis, Peng Hua, Dominik Trzupek, He L-Z., Waseem Qasim, John A. Todd, Ricardo C. Ferreira, Kathryn J. Wood, Fadi Issa, Joanna Hester
Software Mentions: 8
Published: over 4 years ago

10.1371/journal.pgen.1009385

Split versions of Cleave and Rescue selfish genetic elements for measured self limiting gene drive
Cited by: 19
Author(s): Georg Oberhofer, Tobin Ivy, Bruce A. Hay
Software Mentions: 7
Published: almost 4 years ago

10.1080/15592294.2019.1710913

A regulatory role for CHD2 in myelopoiesis
Cited by: 5
Author(s): Farzaneh Shahin Varnoosfaderani, Anna M. Palau, Wenbo Dong, Jenna Persson, Mickaël Durand-Dubief, J. Peter Svensson, Andreas Lennartsson
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0244439

The peptide symporter SLC15a4 is essential for the development of systemic lupus erythematosus in murine models
Cited by: 14
Author(s): Arna Katewa, Eric Suto, Jessica Hui, Jose Heredia, Jie Liang, Jason A. Hackney, Keith R. Anderson, Tuija Alcantar, Natasha Bacarro, Debra Dunlap, Jeffrey Eastham, Andrés Paler-Martı́nez, Xin Y. Rairdan, Zora Modrušan, Wyne P. Lee, Cary D. Austin, Daniel Lafkas, Nico Ghilardi
Software Mentions: 5
Published: almost 4 years ago

10.3390/cells9051288

Computational Tools and Resources Supporting CRISPR-Cas Experiments
Cited by: 34
Author(s): Paweł Śledziński, Mateusz Nowaczyk, Marta Olejniczak
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0227724

Gut-derived Flavonifractor species variants are differentially enriched during in vitro incubation with quercetin
Cited by: 6
Author(s): Gina Paola Rodriguez-Castaño, Federico E. Rey, Alejandro Caro‐Quintero, Alejandro Acosta-González
Software Mentions: 4
Published: about 4 years ago

10.1038/s41598-019-39142-0

Unlocking HDR-mediated nucleotide editing by identifying high-efficiency target sites using machine learning
Cited by: 30
Author(s): Aidan O’Brien, Laurence O.W. Wilson, Gaétan Burgio, Denis C. Bauer
Software Mentions: 4
Published: almost 6 years ago

10.1126/sciadv.abc4493

Regeneration of the pulmonary vascular endothelium after viral pneumonia requires COUP-TF2
Cited by: 25
Author(s): Gan Zhao, Aaron I. Weiner, Katherine M. Neupauer, Maria Fernanda de Mello Costa, Gargi Palashikar, Stephanie Adams-Tzivelekidis, Nilam S. Mangalmurti, Andrew E. Vaughan
Software Mentions: 3
Published: about 4 years ago

10.1186/s12866-020-01770-2

Bacteriophage genotyping using BOXA repetitive-PCR
Cited by: 1
Author(s): Dragica Damnjanović, Xabier Vázquez-Campos, Daniel L. Winter, M. Harvey, Wallace Bridge
Software Mentions: 3
Published: over 4 years ago

10.1093/synbio/ysz016

Better research by efficient sharing: evaluation of free management platforms for synthetic biology designs
Cited by: 8
Author(s): Uriel Urquiza-García, Tomasz Zieliński, Andrew J. Millar
Software Mentions: 3
Published: almost 6 years ago

10.1016/j.meteno.2016.05.003

Molecular Cloning Designer Simulator (MCDS): All-in-one molecular cloning and genetic engineering design, simulation and management software for complex synthetic biology and metabolic engineering projects
Cited by: 5
Author(s): Zhenyu Shi, Claudia E. Vickers
Software Mentions: 2
Published: about 8 years ago

10.1128/AEM.02762-20

Harnessing CRISPR-Cas9 for Genome Editing in Streptococcus pneumoniae D39V
Cited by: 6
Author(s): Dimitra Synefiaridou, Jan‐Willem Veening
Software Mentions: 2
Published: almost 4 years ago

10.1016/j.omtn.2021.08.015

CRISPR-Cas9 correction of OPA1 c.1334G>A: p.R445H restores mitochondrial homeostasis in dominant optic atrophy patient-derived iPSCs
Cited by: 18
Author(s): Paul Edward Sladen, Pedro R.L. Perdigão, Grace Salsbury, Tatiana Novoselova, Jacqueline van der Spuy, J. Paul Chapple, Patrick Yu‐Wai‐Man, Michael E. Cheetham
Software Mentions: 2
Published: about 3 years ago

10.18699/VJ20.643

Study of the effect of the introduction of mitochondrial import determinants into the gRNA structure on the activity of the gRNA/SpCas9 complex in vitro
Cited by: 1
Author(s): Elvira G Zakirova, Yuri Vyatkin, N Verechshagina, Vladimir Vladimirovich Muzyka, И. О. Мазунин, Кonstantin E. Orishchenko
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0227994

Are the current gRNA ranking prediction algorithms useful for genome editing in plants?
Cited by: 44
Author(s): Narjis Fatima, Kylie Shand, Satomi Hayashi, Martin O’Brien, Louise M Burrell, Alexander Johnson, Benjamin Dugdale, Peter M. Waterhouse
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0223935

Repository-based plasmid design
Cited by: 6
Author(s): Joshua J. Timmons, Doug Densmore
Software Mentions: 2
Published: almost 5 years ago

10.3390/cancers12082047

The Tumor Suppressor CYLD Inhibits Mammary Epithelial to Mesenchymal Transition by the Coordinated Inhibition of YAP/TAZ and TGFβ Signaling
Cited by: 9
Author(s): Athanasios Pseftogas, Konstantinos Xanthopoulos, Theofilos Poutahidis, Chrysanthi Ainali, Dimitra Dafou, Emmanuel Panteris, Joseph G. Kern, Xaralabos Varelas, Alexandros Hardas, Christos Gonidas, Anastasia Tsingotjidou, Eudoxia Hatzivassiliou, George Mosialos
Software Mentions: 2
Published: over 4 years ago

10.1186/s40694-021-00111-w

Preservation stress resistance of melanin deficient conidia from Paecilomyces variotii and Penicillium roqueforti mutants generated via CRISPR/Cas9 genome editing
Cited by: 17
Author(s): Sjoerd J Seekles, Pepijn P. P. Teunisse, Maarten Punt, Tom van den Brule, Jan Dijksterhuis, Jos Houbraken, Han A. B. Wösten, Arthur F. J. Ram
Software Mentions: 2
Published: over 3 years ago

10.1016/j.xpro.2020.100084

A Protocol to Engineer Bacteriophages for Live-Cell Imaging of Bacterial Prophage Induction Inside Mammalian Cells
Cited by: 2
Author(s): Katie Bodner, Arin L. Melkonian, Markus W. Covert
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-021-85218-1

Pseudomonas fluorescens F113 type VI secretion systems mediate bacterial killing and adaption to the rhizosphere microbiome
Cited by: 24
Author(s): David Durán, Patricia Bernal, David Vazquez-Arias, Esther Blanco-Romero, Daniel Garrido‐Sanz, Miguel Redondo‐Nieto, Rafael Rivilla, Marta Martín
Software Mentions: 2
Published: almost 4 years ago

10.1128/mSphereDirect.00149-17

An Efficient, Rapid, and Recyclable System for CRISPR-Mediated Genome Editing in Candida albicans
Cited by: 78
Author(s): Namkha Nguyen, Morgan M. Quail, Aaron D. Hernday
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.56075

Srsf10 and the minor spliceosome control tissue-specific and dynamic SR protein expression
Cited by: 16
Author(s): Stefan Meinke, Gesine Goldammer, A Ioana Weber, Victor Tarabykin, Alexander Neumann, Marco Preußner
Software Mentions: 2
Published: over 4 years ago

10.21105/joss.01915

alignparse: A Python package for parsing complex features from high-throughput long-read sequencing
Cited by: 21
Author(s): Katharine H.D. Crawford, Jesse D. Bloom
Software Mentions: 2
Published: about 5 years ago

10.3390/cancers13133233

Inhibition of miR-222 by Oncolytic Adenovirus-Encoded miRNA Sponges Promotes Viral Oncolysis and Elicits Antitumor Effects in Pancreatic Cancer Models
Cited by: 8
Author(s): Giulia Raimondi, Sabrina Gea‐Sorlí, Marc Otero-Mateo, Cristina Fillat
Software Mentions: 1
Published: over 3 years ago

10.3390/cancers12102798

Cx43 and Associated Cell Signaling Pathways Regulate Tunneling Nanotubes in Breast Cancer Cells
Cited by: 24
Author(s): Alexander Tishchenko, Daniel Azorín, Laia Vidal-Brime, María José Muñoz, Pol Jiménez Arenas, Christopher Pearce, Henrique Girão, Santiago Ramón y Cajal, Trond Aasen
Software Mentions: 1
Published: over 4 years ago

10.1186/s12964-019-0473-9

RNA sequencing reveals an additional Crz1-binding motif in promoters of its target genes in the human fungal pathogen Candida albicans
Cited by: 44
Author(s): Huihui Xu, Tianshu Fang, Raha Parvizi Omran, Malcolm Whiteway, Lijing Jiang
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41419-018-1255-9

Lamin B is a target for selective nuclear PQC by BAG3: implication for nuclear envelopathies
Cited by: 8
Author(s): Manish Kumar Gupta, Jennifer Gordon, Gregory Glauser, Valerie D. Myers, Arthur M. Feldman, Joseph Y. Cheung, Kamel Khalili
Software Mentions: 1
Published: almost 6 years ago

10.3390/cells10061312

Assessing the Anti-Inflammatory Activity of the Anxiolytic Drug Buspirone Using CRISPR-Cas9 Gene Editing in LPS-Stimulated BV-2 Microglial Cells
Cited by: 13
Author(s): Sarah Thomas Broome, Teagan Fisher, Alen Faiz, Kevin A. Keay, Giuseppe Musumeci, Ghaith Al-Badri, Alessandro Castorina
Software Mentions: 1
Published: over 3 years ago

10.1093/bfgp/elz012

Cutting back malaria: CRISPR/Cas9 genome editing of Plasmodium
Cited by: 34
Author(s): Marcus Lee, Scott E. Lindner, José-Juan Lopez-Rubio, Manuel Llinás
Software Mentions: 1
Published: over 5 years ago

10.1002/ctm2.261

Knockdown of lactate dehydrogenase by adeno‐associated virus‐delivered CRISPR/Cas9 system alleviates primary hyperoxaluria type 1
Cited by: 18
Author(s): Rui Zheng, Xiaoliang Fang, Xi Chen, Yunteng Huang, Guofeng Xu, Lei He, Yueyan Li, Xuran Niu, Lei Yang, Liren Wang, Dali Li, Hui Geng
Software Mentions: 1
Published: about 4 years ago

10.1042/BSR20204243

Generation of <i>APOE</i> knock-down SK-N-SH human neuroblastoma cells using CRISPR/Cas9: a novel cellular model relevant to Alzheimer’s disease research
Cited by: 4
Author(s): Sonia Sanz Muñoz, Brett Garner, Lezanne Ooi
Software Mentions: 1
Published: almost 4 years ago

10.1016/j.cub.2018.09.059

Two Interlinked Bistable Switches Govern Mitotic Control in Mammalian Cells
Cited by: 56
Author(s): Scott Rata, Maria F. Suarez Peredo Rodriguez, Stephy Joseph, Nisha Peter, Fabio Echegaray Iturra, Fengwei Yang, Anotida Madzvamuse, Jan Gustav Ruppert, Kumiko Samejima, Melpomeni Platani, Mónica Álvarez-Fernández, Marcos Malumbres, William C. Earnshaw, Béla Novák, Helfrid Hochegger
Software Mentions: 1
Published: about 6 years ago

10.1242/dmm.040972

Impaired neural differentiation and glymphatic CSF flow in the <i>Ccdc39</i> rat model of neonatal hydrocephalus: genetic interaction with <i>L1cam</i>
Cited by: 19
Author(s): Andrea Emmert, Eri Iwasawa, Crystal Shula, Preston A Schultz, Diana M. Lindquist, Richard S. Dunn, Elizabeth M. Fugate, Yueh-Chiang Hu, Francesco T. Mangano, June Goto
Software Mentions: 1
Published: about 5 years ago

10.1242/bio.027771

MCAM contributes to the establishment of cell autonomous polarity in myogenic and chondrogenic differentiation
Cited by: 5
Author(s): Artal Moreno-Fortuny, Laricia Bragg, Giulio Cossu, Urmas Roostalu
Software Mentions: 1
Published: almost 8 years ago

10.1038/s12276-019-0295-2

Exosomal PD-L1 promotes tumor growth through immune escape in non-small cell lung cancer
Cited by: 180
Author(s): Dong Ha Kim, Hyeong Ryul Kim, Yun Jung Choi, Seon Ye Kim, Jung Eun Lee, Kyung Jeh Sung, Young Hoon Sung, Chan Gi Pack, Min Kyo Jung, Byoung Hee Han, Kunhee Kim, Woo Sung Kim, Soo Jeong Nam, Chang Choi, Miyong Yun, Jae Cheol Lee, Jin Kyung Rho
Software Mentions: 1
Published: over 5 years ago

10.1093/femsyr/fox030

CRISPR/Cas system for yeast genome engineering: advances and applications
Cited by: 134
Author(s): Vratislav Šťovíček, Carina Holkenbrink, Irina Borodina
Software Mentions: 1
Published: over 7 years ago

10.3389/fbioe.2020.00945

Yarrowia lipolytica Strains Engineered for the Production of Terpenoids
Cited by: 41
Author(s): Jonathan Asmund Arnesen, Kanchana Rueksomtawin Kildegaard, Marc Cernuda Pastor, Sidharth Jayachandran, Mette Kristensen, Irina Borodina
Software Mentions: 1
Published: over 4 years ago

10.3389/fbioe.2020.601704

Hydrogels for 3D Neural Tissue Models: Understanding Cell-Material Interactions at a Molecular Level
Cited by: 15
Author(s): Catalina Vallejo-Giraldo, Martina Genta, Olivia Cauvi, Josef Goding, Rylie A. Green
Software Mentions: 1
Published: about 4 years ago

10.3389/fbioe.2021.623278

CRISPR/Cas9 Ribonucleoprotein-Based Genome Editing Methodology in the Marine Protozoan Parasite Perkinsus marinus
Cited by: 5
Author(s): Raghavendra Yadavalli, Kousuke Umeda, Hannah A Waugh, Adrienne N. Tracy, Asha Sidhu, Derek E Hernández, José A. Fernández Robledo
Software Mentions: 1
Published: over 3 years ago

10.3389/fbioe.2019.00018

Improving Reproducibility in Synthetic Biology
Cited by: 57
Author(s): Mathew M Jessop-Fabre, Nikolaus Sonnenschein
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcimb.2021.618994

Auranofin Resistance in Toxoplasma gondii Decreases the Accumulation of Reactive Oxygen Species but Does Not Target Parasite Thioredoxin Reductase
Cited by: 8
Author(s): I. Christopher, James A. Tirtorahardjo, Sharon Jan, Sakura S. Schweizer, Shawn A. C. Rosario, Yanmiao Du, Jerry J Zhang, Naomi S. Morrissette, Rosa Andrade
Software Mentions: 1
Published: almost 4 years ago

10.3389/fimmu.2017.01535

The Human-Associated Archaeon Methanosphaera stadtmanae Is Recognized through Its RNA and Induces TLR8-Dependent NLRP3 Inflammasome Activation
Cited by: 55
Author(s): Tim Vierbuchen, Corinna Bang, Hanna Rosigkeit, Ruth A. Schmitz, Holger Heine
Software Mentions: 1
Published: about 7 years ago

10.3389/fimmu.2021.722181

Rapid Characterization of Complex Killer Cell Immunoglobulin-Like Receptor (KIR) Regions Using Cas9 Enrichment and Nanopore Sequencing
Cited by: 12
Author(s): Jesse Bruijnesteijn, Marit van der Wiel, Natasja G. de Groot, Ronald E. Bontrop
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2019.00998

CTLA4 Message Reflects Pathway Disruption in Monogenic Disorders and Under Therapeutic Blockade
Cited by: 9
Author(s): Josselyn E. Garcia-Perez, Ryan M. Baxter, Daniel S. Kong, Richard P. Tobin, Martin D. McCarter, John M. Routes, James Verbsky, Michael B. Jordan, Cullen M. Dutmer, Elena W.Y. Hsieh
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2018.01226

A Novel Tomato Fusarium Wilt Tolerance Gene
Cited by: 54
Author(s): Cahya Prihatna, Martin J. Barbetti, Susan J. Barker
Software Mentions: 1
Published: over 6 years ago

10.3389/fmolb.2020.00010

DETECTing Merkel Cell Polyomavirus in Merkel Tumors
Cited by: 5
Author(s): Reety Arora, Komal Gupta, Anjali Vijaykumar, Sudhir Krishna
Software Mentions: 1
Published: almost 5 years ago

10.3389/fnana.2016.00081

The Intracellular Signaling Molecule Darpp-32 Is a Marker for Principal Neurons in the Cerebellum and Cerebellum-Like Circuits of Zebrafish
Cited by: 3
Author(s): Lena Robra, Vatsala Thirumalai
Software Mentions: 1
Published: over 8 years ago

10.3389/fonc.2019.01461

Linking NRP2 With EMT and Chemoradioresistance in Bladder Cancer
Cited by: 18
Author(s): Alexander Schulz, Ielizaveta Gorodetska, Rayk Behrendt, Susanne Fuessel, Kati Erdmann, Sarah Foerster, Kaustubh Datta, Thomas Mayr, Anna Dubrovska, Michael H. Muders
Software Mentions: 1
Published: almost 5 years ago

10.3389/fpls.2018.00740

Optimizing CRISPR/Cas9 for the Diatom Phaeodactylum tricornutum
Cited by: 57
Author(s): Daniel Stukenberg, Stefan Zauner, Gianluca Dell’Aquila, Uwe G. Maier
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.43999

Genetic dissection of the different roles of hypothalamic kisspeptin neurons in regulating female reproduction
Cited by: 47
Author(s): Luhong Wang, Charlotte Vanacker, Laura L. Burger, Tammy M. Barnes, Yatrik M. Shah, Martin G. Myers, Suzanne M. Moenter
Software Mentions: 1
Published: over 5 years ago

10.1534/g3.116.038091

Highly Efficient Cpf1-Mediated Gene Targeting in Mice Following High Concentration Pronuclear Injection
Cited by: 24
Author(s): Dawn E. Watkins‐Chow, Gaurav K. Varshney, Lisa Garrett, Zelin Chen, Elvira Jimenez, Cecilia Rivas, Kevin Bishop, William J. Pavan, Shawn M. Burgess
Software Mentions: 1
Published: almost 8 years ago

10.3390/genes12030439

Characterization of Two Ethephon-Induced IDA-Like Genes from Mango, and Elucidation of Their Involvement in Regulating Organ Abscission
Cited by: 8
Author(s): Avinash Chandra, Eyal Halon, Hanita Zemach, Tali Zviran, Isaac Sisai, Sonia Philosoph‐Hadas, Shimon Meir, Yuval Cohen, Vered Irihimovitch
Software Mentions: 1
Published: almost 4 years ago

10.1016/j.jbc.2021.100500

A polysaccharide utilization locus from the gut bacterium Dysgonomonas mossii encodes functionally distinct carbohydrate esterases
Cited by: 17
Author(s): Cathleen Kmezik, Scott Mazurkewich, Tomke Meents, Lauren S. McKee, Alexander Idström, Marina Armeni, Otto Savolainen, Gisela Brändén, Johan Larsbrink
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13036-017-0061-8

Streamlining recombination-mediated genetic engineering by validating three neutral integration sites in Synechococcus sp. PCC 7002
Cited by: 20
Author(s): Anne Ilse Maria Vogel, Rahmi Lale, Martin F. Hohmann‐Marriott
Software Mentions: 1
Published: over 7 years ago

10.1083/jcb.202103176

Pex30-like proteins function as adaptors at distinct ER membrane contact sites
Cited by: 13
Author(s): Joana Veríssimo Ferreira, Pedro Carvalho
Software Mentions: 1
Published: over 3 years ago

10.1016/j.redox.2020.101800

The role of glutamate oxaloacetate transaminases in sulfite biosynthesis and H2S metabolism
Cited by: 17
Author(s): Anna-Theresa Mellis, Albert L. Misko, Sita Arjune, Ye Liang, Katalin Erdélyi, Tamás Ditrói, Alexander Tobias Kaczmarek, Péter Nagy, Günter Schwarz
Software Mentions: 1
Published: almost 4 years ago

10.1111/resp.13960

Acute cigarette smoke‐induced <scp>eQTL</scp> affects formyl peptide receptor expression and lung function
Cited by: 6
Author(s): Simon D. Pouwels, Valerie R. Wiersma, Immeke Fokkema, Marijn Berg, Nick H. T. ten Hacken, Maarten van den Berge, Irene H. Heijink, Alen Faiz
Software Mentions: 1
Published: about 4 years ago

10.7554/eLife.45248

Glycosylphosphatidylinositol biosynthesis and remodeling are required for neural tube closure, heart development, and cranial neural crest cell survival
Cited by: 16
Author(s): Marshall Lukacs, Tia Roberts, Praneet Chatuverdi, Rolf W. Stottmann
Software Mentions: 1
Published: over 5 years ago

10.1002/bmb.21395

“<i>Designer babies</i>?!” A <scp>CRISPR</scp>‐based learning module for undergraduates built around the <scp><i>CCR5</i></scp> gene
Cited by: 2
Author(s): Jay N. Pieczynski, H. Lynn Kee
Software Mentions: 1
Published: over 4 years ago

10.1038/srep25611

A Retroviral CRISPR-Cas9 System for Cellular Autism-Associated Phenotype Discovery in Developing Neurons
Cited by: 35
Author(s): Michael R. Williams, Catherine J. Fricano-Kugler, Stephanie A. Getz, Patrick D. Skelton, Jeong-Hoon Lee, Christian P. Rizzuto, Joseph S. Geller, Meijie Li, Bryan W. Luikart
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-16279-4

Towards personalised allele-specific CRISPR gene editing to treat autosomal dominant disorders
Cited by: 58
Author(s): Kathleen A. Christie, David Courtney, Larry DeDionisio, Connie Chao-Shern, Shyamasree De Majumdar, Laura Mairs, M. Andrew Nesbit, Tara Moore
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-019-38732-2

Knockout rat models mimicking human atherosclerosis created by Cpf1-mediated gene targeting
Cited by: 29
Author(s): Jong Geol Lee, Chang Hoon Ha, Bo-Hyun Yoon, Seung-A Cheong, Globinna Kim, Dong Hoon Lee, Dong‐Cheol Woo, Young–Hak Kim, Sang-Yoon Nam, Sangwook Lee, Young Hoon Sung, In-Jeoung Baek
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.anaerobe.2019.102074

Phosphorylation and functionality of CdtR in Clostridium difficile
Cited by: 9
Author(s): Terry W. Bilverstone, Nigel P. Minton, Sarah A. Kuehne
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-64047-8

Tagging enhances histochemical and biochemical detection of Ran Binding Protein 9 in vivo and reveals its interaction with Nucleolin
Cited by: 3
Author(s): Shimaa Soliman, Aaron E. Stark, Miranda L. Gardner, Sean W. Harshman, Chelssie C. Breece, Foued Amari, Arturo Orlacchio, Min Chen, Anna Tessari, Jennifer A. Martin, Rosa Visone, Michael A. Freitas, Krista M. D. La Perle, Dario Palmieri, Vincenzo Coppola
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-72040-4

Generation of myostatin edited horse embryos using CRISPR/Cas9 technology and somatic cell nuclear transfer
Cited by: 15
Author(s): Lucía Moro, Diego L. Viale, Juan Ignacio Bastón, Victoria Arnold, M. Suvá, Elisabet Astrid Wiedenmann, Martín Olguín, Santiago Gabriel Miriuka, G. Vichera
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms22158069

Mouse Models of Achromatopsia in Addressing Temporal “Point of No Return” in Gene-Therapy
Cited by: 3
Author(s): Nan-Kai Wang, Pei-Kang Liu, Yang Kong, Sarah R. Levi, Wenmin Huang, Chun‐Wei Hsu, Hung-Hsi Wang, Nelson Chen, Yun-Ju Tseng, Peter M J Quinn, Ming‐Hong Tai, Chyuan‐Sheng Lin, Stephen H. Tsang
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-86490-x

Sensitivity of cells to ATR and CHK1 inhibitors requires hyperactivation of CDK2 rather than endogenous replication stress or ATM dysfunction
Cited by: 8
Author(s): Jennifer Ditano, Katelyn L. Donahue, Laura J. Tafe, Charlotte F. McCleery, Alan Eastman
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13287-019-1520-6

Genetic tool for fate mapping of Oct4 (Pou5f1)-expressing cells and their progeny past the pluripotency stage
Cited by: 5
Author(s): Andrey A. Kuzmin, Veronika V. Ermakova, Sergey Sinenko, Sergey V. Ponomartsev, T. Yu. Starkova, Elena V. Skvortsova, Olga A. Cherepanova, Alexey Tomilin
Software Mentions: 1
Published: about 5 years ago

10.1016/j.anaerobe.2019.06.020

A novel conjugal donor strain for improved DNA transfer into Clostridium spp.
Cited by: 29
Author(s): Craig Woods, Christopher M. Humphreys, Raquel Rodrigues, Patrick Ingle, Peter Rowe, Anne M. Henstra, Michael Kӧpke, Séan D. Simpson, Klaus Winzer, Nigel P. Minton
Software Mentions: 1
Published: over 5 years ago

10.1093/synbio/ysy020

The Synthetic Genome Summer Course
Cited by: 0
Author(s): Benjamin A. Blount, Tom Ellis
Software Mentions: 1
Published: almost 7 years ago

10.1093/synbio/ysz014

PartCrafter: find, generate and analyze BioParts
Cited by: 1
Author(s): Emily Scher, Shay B. Cohen, Guido Sanguinetti
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21103604

On-Target CRISPR/Cas9 Activity Can Cause Undesigned Large Deletion in Mouse Zygotes
Cited by: 29
Author(s): Alexey Korablev, Varvara Lukyanchikova, Irina Serova, Nariman Battulin
Software Mentions: 1
Published: over 4 years ago

10.1128/mSphere.00598-18

MAP Kinase Regulation of the Candida albicans Pheromone Pathway
Cited by: 4
Author(s): Golnaz Rastghalam, Raha Parvizi Omran, Masoumeh Alizadeh, Debrah Fulton, Jaideep Mallick, Malcolm Whiteway
Software Mentions: 1
Published: almost 6 years ago

10.2196/resprot.9285

Facilitating Web-Based Collaboration in Evidence Synthesis (TaskExchange): Development and Analysis
Cited by: 3
Author(s): Tari Turner, Emily Steele, Chris Mavergames, Julian Elliott, T. Ensembl Team
Software Mentions: 1
Published: about 6 years ago

10.3390/plants9101360

Improving Horticultural Crops via CRISPR/Cas9: Current Successes and Prospects
Cited by: 13
Author(s): Bed Prakash Bhatta, Subas Malla
Software Mentions: 1
Published: about 4 years ago

10.3390/v12101154

Targeted Chromatinization and Repression of HIV-1 Provirus Transcription with Repurposed CRISPR/Cas9
Cited by: 15
Author(s): Alex Olson, Binita Basukala, Seung‐Hee Lee, Matthew Gagné, Wilson Wong, Andrew J. Henderson
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0200660

Mild hydrostatic pressure triggers oxidative responses in Escherichia coli
Cited by: 9
Author(s): Aurélie Guyet, Martyn Dade‐Robertson, Anil Wipat, John Casement, William Thomas Lingwood Smith, Helen Mitrani, Meng Zhang
Software Mentions: 1
Published: over 6 years ago

10.1021/acssuschemeng.1c01165

Engineering the Turnover Stability of Cellobiose Dehydrogenase toward Long-Term Bioelectronic Applications
Cited by: 11
Author(s): Andreas F. Geiss, Thomas Reichhart, Barbara Pejker, Esther Plattner, Peter L. Herzog, Christopher Schulz, Roland Ludwig, Alfons K. G. Felice, Dietmar Haltrich
Software Mentions: 1
Published: over 3 years ago

10.1038/s41388-018-0332-y

PDLIM7 and CDH18 regulate the turnover of MDM2 during CDK4/6 inhibitor therapy-induced senescence
Cited by: 35
Author(s): Mary E. Klein, Mark A. Dickson, Cristina R. Antonescu, Li‐Xuan Qin, Scott J. Dooley, Afsar Barlas, Katia Manova, Gary K. Schwartz, Aimeé M. Crago, Samuel Singer, Andrew Koff, William D. Tap
Software Mentions: 1
Published: over 6 years ago

10.1128/jmbe.00114-21

Stay-on-Task Exercises as a Tool To Maintain Focus during a CRISPR CURE
Cited by: 0
Author(s): Ben A. Evans, Ethan S. Pickerill, Douglas A. Bernstein
Software Mentions: 1
Published: over 3 years ago

10.1186/s40170-019-0197-8

Epithelial to mesenchymal transition (EMT) is associated with attenuation of succinate dehydrogenase (SDH) in breast cancer through reduced expression of SDHC
Cited by: 47
Author(s): Gro Vatne Røsland, Sissel E. Dyrstad, Deusdedit Tusubira, Reham Helwa, Tuan Zea Tan, Maria Lie Lotsberg, Ina Katrine Nitschke Pettersen, Ansgar Berg, Charlotte Kindt, Fredrik Hoel, Kirstine Jacobsen, Ari Jón Arason, Agnete S.T. Engelsen, Henrik J. Ditzel, Per Eystein Lønning, Camilla Krakstad, Jean Paul Thiéry, James B. Lorens, Stian Knappskog, Karl Johan Tronstad
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0234635

Genome sequence analysis of a Helicoverpa armigera single nucleopolyhedrovirus (HearNPV-TR) isolated from Heliothis peltigera in Turkey
Cited by: 4
Author(s): Gözde Büşra Eroğlu, Cihan İnan, Remziye Nalçacıoğlu, Zihni Demırbag
Software Mentions: 1
Published: over 4 years ago

10.7554/eLife.45829

Rapid and iterative genome editing in the malaria parasite Plasmodium knowlesi provides new tools for P. vivax research
Cited by: 56
Author(s): Franziska Mohring, Melissa N. Hart, Thomas A. Rawlinson, Ryan C. Henrici, James Charleston, Ernest Diez Benavente, Avnish Patel, Jo Hall, Neil Almond, Susana Campino, Taane G. Clark, Colin J. Sutherland, David A. Baker, Simon J. Draper, Robert W. Moon
Software Mentions: 1
Published: over 5 years ago