bioconductor: MassArray | Projects

10.1186/1756-0500-4-546

HumMeth27QCReport: an R package for quality control and primary analysis of Illumina Infinium methylation data
Cited by: 20
Author(s): Francesco Mancuso, Magda Montfort, Anna Carreras, Andreu Alibés, Guglielmo Roma
Software Mentions: 11
Published: almost 13 years ago

10.1186/1471-2105-15-S1-S11

The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again
Cited by: 19
Author(s): Alejandra N. González-Beltrán, Steffen Neumann, Eamonn Maguire, Susanna-Assunta Sansone, Philippe Rocca-Serra
Software Mentions: 11
Published: almost 11 years ago

10.3389/fgene.2015.00287

Design, measurement and processing of region-specific DNA methylation assays: the mass spectrometry-based method EpiTYPER
Cited by: 56
Author(s): H. Eka D. Suchiman, Roderick C. Slieker, Dennis Kremer, P. Eline Slagboom, Bastiaan T. Heijmans, Elmar W. Tobi
Software Mentions: 7
Published: about 9 years ago

10.1186/1471-2164-13-683

Population-based rare variant detection via pooled exome or custom hybridization capture with or without individual indexing
Cited by: 24
Author(s): Enrique Ramos, Benjamin T. Levinson, Sara E. Chasnoff, Andrew Hughes, Andrew L. Young, Katherine A. Thornton, Allie Li, Francesco Vallania, Michael Province, Todd E. Druley
Software Mentions: 7
Published: almost 12 years ago

10.1002/1878-0261.12062

Methylation profiling of paediatric pilocytic astrocytoma reveals variants specifically associated with tumour location and predictive of recurrence
Cited by: 14
Author(s): Alexandra Sexton-Oates, Andrew Dodgshun, Volker Hovestadt, David Jones, David M. Ashley, Michael J. Sullivan, Duncan MacGregor, Richard Saffery
Software Mentions: 6
Published: over 6 years ago

10.1186/gm500

Analysis of epigenetic changes in survivors of preterm birth reveals the effect of gestational age and evidence for a long term legacy
Cited by: 105
Author(s): Mark N Cruickshank, Alicia Oshlack, Christiane Theda, Peter G Davis, David Martino, Penelope M. Sheehan, Yun Dai, Richard Saffery, Lex W. Doyle, Jeffrey M Craig
Software Mentions: 5
Published: almost 12 years ago

10.1186/s13148-016-0234-1

Amnion as a surrogate tissue reporter of the effects of maternal preeclampsia on the fetus
Cited by: 8
Author(s): Masako Suzuki, Ryo Maekawa, Nicole E. Patterson, David M. Reynolds, Brent Calder, Sandra E. Reznik, Hye Heo, Francine Einstein, John M. Greally
Software Mentions: 5
Published: over 8 years ago

10.1186/s13148-017-0408-5

Newborn genome-wide DNA methylation in association with pregnancy anxiety reveals a potential role for GABBR1
Cited by: 29
Author(s): Elise Vangeel, Ehsan Pishva, Titia Hompes, Daniël L.A. van den Hove, Diether Lambrechts, Karel Allegaert, Kathleen Freson, Benedetta Izzi, Stephan Claes
Software Mentions: 4
Published: about 7 years ago

10.3389/fpls.2021.699464

The New Is Old: Novel Germination Strategy Evolved From Standing Genetic Variation in Weedy Rice
Cited by: 4
Author(s): Chengchuan Zhou, Yang Feng, Gengyun Li, Mengli Wang, Jinjing Jian, Yuguo Wang, Wenju Zhang, Zilin Song, Linfeng Li, Bao‐Rong Lu, Ji Yang
Software Mentions: 3
Published: over 3 years ago

10.1002/ece3.2466

Dealing with paralogy in <scp>RAD</scp> seq data: in silico detection and single nucleotide polymorphism validation in Robinia pseudoacacia L.
Cited by: 26
Author(s): Cindy Verdu, Erwan Guichoux, Samuel Quevauvillers, Olivier De Thier, Yec’han Laizet, Adline Delcamp, Frédéric Gévaudant, Arnaud Monty, Annabel J. Porté, Philippe Lejeune, Ludivine Lassois, Stéphanie Mariette
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pone.0013020

Genome-Wide DNA Methylation Maps in Follicular Lymphoma Cells Determined by Methylation-Enriched Bisulfite Sequencing
Cited by: 36
Author(s): Jeong-Hyeon Choi, Yajun Li, Jiangtao Guo, Lirong Pei, Tibor A. Rauch, Robin Kramer, Simone Macmil, Graham B. Wiley, Lynda Bennett, Jennifer Schnabel, Kristen H. Taylor, Sun Il Kim, Dong Xu, Arun Sreekumar, Gerd P. Pfeifer, Bruce A. Roe, Charles W. Caldwell, Kapil N. Bhalla, Huidong Shi
Software Mentions: 3
Published: about 14 years ago

10.3389/fgene.2014.00150

Characterization of HPV DNA methylation of contiguous CpG sites by bisulfite treatment and massively parallel sequencingâ€”the FRAGMENT approach
Cited by: 8
Author(s): Chang Sun, Thomas McAndrew, Benjamin Smith, Zigui Chen, Marina Frimer, Robert D. Burk
Software Mentions: 3
Published: over 10 years ago

10.1038/s41598-020-76491-7

MassArray analysis of genomic susceptibility variants in ovarian cancer
Cited by: 1
Author(s): Sonali Verma, Indu Sharma, Varun Sharma, Amrita Bhat, Ruchi Shah, G. M. Bhat, Bhanu Sharma, Divya Bakshi, Ashna Nagpal, Ajay K. Wakhloo, Audesh Bhat, Rakesh Kumar
Software Mentions: 2
Published: almost 4 years ago

10.1186/s13059-014-0415-1

Comparative population genomics reveals the domestication history of the peach, Prunus persica, and human influences on perennial fruit crops
Cited by: 81
Author(s): Ke Cao, Zhijun Zheng, Lirong Wang, Xin Liu, Guoqiang Zhu, Weichao Fang, Shifeng Cheng, Peng Zeng, Chang Wen Chen, Xinwei Wang, Min Xie, Xiao Bo Zhong, Xiaoli Wang, Pei Zhao, Chao Bian, Yuxia Zhu, Jiahui Zhang, MA Guo-sheng, Chengxuan Chen, Yanjun Li, Fengge Hao, Yong Li, Guodong Huang, Yuxiang Li, Haiyan Li, Jian Guo, Xun Xu, Jun Wang
Software Mentions: 2
Published: over 10 years ago

10.1186/1741-7007-11-50

High-density linkage mapping in a pine tree reveals a genomic region associated with inbreeding depression and provides clues to the extent and distribution of meiotic recombination
Cited by: 56
Author(s): Émilie Chancerel, Jean‐Baptiste Lamy, Isabelle Lesur, Céline Noirot, Christophe Klopp, François Ehrenmann, Christophe Boury, Grégoire Le Provost, Philippe Label, Céline Lalanne, Valérie Léger, Franck Salin, Jean‐Marc Gion, Christophe Plomion
Software Mentions: 2
Published: over 11 years ago

10.1038/s41598-018-24005-x

Epigenetic alterations to Polycomb targets precede malignant transition in a mouse model of breast cancer
Cited by: 9
Author(s): Ying Cai, Jhih Rong Lin, Quanwei Zhang, Kelly O’Brien, Cristina Montagna, Zhengdong D. Zhang
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pgen.1003578

Mapping of PARK2 and PACRG Overlapping Regulatory Region Reveals LD Structure and Functional Variants in Association with Leprosy in Unrelated Indian Population Groups
Cited by: 23
Author(s): Rupali Chopra, Shafat Ali, Amit Srivastava, Sandeep Aggarwal, Bhupender Kumar, Siddharth Manvati, P. Kalaiarasan, Mamta Jena, Vijay Kumar Garg, S N Bhattacharya, R. Bamezai
Software Mentions: 2
Published: over 11 years ago

10.1002/mgg3.1299

Roles of HOTAIR in lung cancer susceptibility and prognosis
Cited by: 15
Author(s): Mengmeng Ren, Sen Xu, Yong Wei, Juanjuan Yang, Yanan Yang, Shanshan Sun, Youjie Li, Pingyu Wang, Songqiang Xie
Software Mentions: 1
Published: over 4 years ago

10.7717/peerj.8596

Intracranial aneurysm’s association with genetic variants, transcription abnormality, and methylation changes in ADAMTS genes
Cited by: 6
Author(s): Shi Chen, Mengqi Li, Wenqiang Xin, Shengze Liu, Linfei Zheng, Yan Li, Mengyao Li, Mengxiong Zhan, Xinyu Yang
Software Mentions: 1
Published: over 4 years ago

10.1186/1746-4811-6-12

Protocol: a simple gel-free method for SNP genotyping using allele-specific primers in rice and other plant species
Cited by: 28
Author(s): Naoki Hirotsu, Naomi Murakami, Takayuki Kashiwagi, Kazuhiro Ujiie, Ken Ishimaru
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pgen.1000116

Global Mapping of DNA Methylation in Mouse Promoters Reveals Epigenetic Reprogramming of Pluripotency Genes
Cited by: 334
Author(s): Cassandra R. Farthing, Gabriella Ficz, Ray Kit Ng, Chun-Fung Chan, Simon Andrews, Wendy Dean, Myriam Hemberger, Wolf Reik
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pgen.1000866

Rapid Assessment of Genetic Ancestry in Populations of Unknown Origin by Genome-Wide Genotyping of Pooled Samples
Cited by: 45
Author(s): Charleston W.K. Chiang, Zofia K. Z. Gajdos, Joshua M. Korn, Finny G. Kuruvilla, Johannah L. Butler, Rachel Hackett, Candace Guiducci, Thutrang T. Nguyen, Rainford Wilks, Terrence Forrester, Christopher A. Haiman, Katherine DeLellis Henderson, Loı̈c Le Marchand, Brian E. Henderson, Mark R. Palmert, Colin A. McKenzie, Helen N. Lyon, Richard S. Cooper, Xiaofeng Zhu, Joel N. Hirschhorn
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pgen.1003873

Loss of DNMT1o Disrupts Imprinted X Chromosome Inactivation and Accentuates Placental Defects in Females
Cited by: 60
Author(s): Serge McGraw, Christopher C. Oakes, Josée Martel, M. Cecilia Cirio, Pauline de Zeeuw, Winifred Mak, Christoph Plass, Marisa S. Bartolomei, J. Richard Chaillet, Jacquetta M. Trasler
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pmed.1000029

Donor-Derived Brain Tumor Following Neural Stem Cell Transplantation in an Ataxia Telangiectasia Patient
Cited by: 808
Author(s): Ninette Amariglio, Abraham Hirshberg, Bernd W. Scheithauer, Yoram Cohen, Ron Loewenthal, Luba Trakhtenbrot, Nurit Paz, Maya Koren‐Michowitz, Dalia Waldman, Leonor Leider-Trejo, Amos Toren, Shlomi Constantini, Gideon Rechavi
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0067379

Altered Methylation of IGF2 Locus 20 Years after Preterm Birth at Very Low Birth Weight
Cited by: 19
Author(s): Karoliina Wehkalampi, Mari Muurinen, Sara Bruce Wirta, Katariina Hannula-Jouppi, Petteri Hovi, Anna‐Liisa Järvenpää, Johan G. Eriksson, Sture Andersson, Juha Kere, Eero Kajantie
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0062377

Association Study Confirmed Susceptibility Loci with Keloid in the Chinese Han Population
Cited by: 40
Author(s): Faming Zhu, Baoyu Wu, Li Ping, Jianbo Wang, Huayang Tang, Ye Liu, Xianbo Zuo, Hui Cheng, Yu Ding, Wen Wang, Yujuan Zhai, Fu Qian, Wenju Wang, Xiangfeng Yuan, Jing Wang, Wei-Wei Ha, Jun-Sheng Hou, Fusheng Zhou, Wenwu Yin, Jinping Gao, Yujun Sheng, Liangdan Sun, Jianjun Li, Sen Yang, Xuejun Zhang
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0158613

Genetic Variants in the p14ARF/MDM2/TP53 Pathway Are Associated with the Prognosis of Esophageal Squamous Cell Carcinoma Patients Treated with Radical Resection
Cited by: 1
Author(s): Jing Li, Yang Tang, Liu Huang, Qianqian Yu, Guohong Hu, Xianglin Yuan
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0143890

Using Next Generation Sequencing for Multiplexed Trait-Linked Markers in Wheat
Cited by: 27
Author(s): Amy Bernardo, Shan Wang, Paul St. Amand, Guihua Bai
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0045112

Multiple Loci Associated with Renal Function in African Americans
Cited by: 7
Author(s): Daniel Shriner, Alan Herbert, Ayo P. Doumatey, Jie Zhou, Hanxia Huang, Michael R. Erdos, Guanjie Chen, Norman P. Gerry, Michael F. Christman, Adebowale Adeyemo, Charles N. Rotimi
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0040432

Breed-Dependent Transcriptional Regulation of 5′-Untranslated GR (NR3C1) Exon 1 mRNA Variants in the Liver of Newborn Piglets
Cited by: 15
Author(s): Huafeng Zou, Li R, Yimin Jia, Xia Yang, Yingdong Ni, Rihua Cong, Paul D. Soloway, Ruqian Zhao
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0100515

SLCO3A1, a Novel Crohn’s Disease-Associated Gene, Regulates NF-κB Activity and Associates with Intestinal Perforation
Cited by: 14
Author(s): Wei Shu, Tao Yan, Meng Tzu Weng, Liang‐Chuan Lai, Jue-Hsuan Hsiao, Eric Y. Chuang, Chia Tung Shun, Deng Cheng Wu, Ai Wen Kao, Chiao Shung Chuang, Yen Hsuan Ni, Ming Jium Shieh, Chien Chih Tung, Yun Chen, Cheng Yi Wang, Ramnik J. Xavier, Daniel K. Podolsky, Jau Min Wong
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0023881

DNA Methylation Profiles of the Brain-Derived Neurotrophic Factor (BDNF) Gene as a Potent Diagnostic Biomarker in Major Depression
Cited by: 336
Author(s): Manabu Fuchikami, Shigeru Morinobu, Masahiro Segawa, Yasumasa Okamoto, Shigeto Yamawaki, Norio Ozaki, Takeshi Inoue, Ichiro Kusumi, Tsukasa Koyama, Kounosuke Tsuchiyama, Takeshi Terao
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0089111

Functional Polymorphisms in Interleukin-23 Receptor and Susceptibility to Esophageal Squamous Cell Carcinoma in Chinese Population
Cited by: 15
Author(s): Bin Ni, Shaomu Chen, Haifeng Xie, Haitao Ma
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0125186

Relationship between Adiponectin Gene Polymorphisms and Late-Onset Alzheimer’s Disease
Cited by: 21
Author(s): Yu Zhang, Wei Li, Deren Hou, Lin Zhou, Yanyao Deng, Mi Tian, Xialu Feng
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0008887

Cytosine Methylation Dysregulation in Neonates Following Intrauterine Growth Restriction
Cited by: 126
Author(s): Francine Einstein, Reid F. Thompson, Tushar D. Bhagat, Melissa Fazzari, Amit Verma, Nir Barzilai, John M. Greally
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0201837

Superior cognitive goal maintenance in carriers of genetic markers linked to reduced striatal D2 receptor density (C957T and DRD2/ANKK1-TaqIA)
Cited by: 7
Author(s): Jonas Persson, Cecilia Stenfors
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0070307

Targeted Re-Sequencing Identified rs3106189 at the 5′ UTR of TAPBP and rs1052918 at the 3′ UTR of TCF3 to Be Associated with the Overall Survival of Colorectal Cancer Patients
Cited by: 7
Author(s): Jiaofang Shao, Xiaoyan Lou, Jun Wang, Jing Zhang, Chen Chen, Dasong Hua, Fan Mo, Xu Han, Shu Zheng, Biaoyang Lin
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0001882

An Integrative Genomic and Epigenomic Approach for the Study of Transcriptional Regulation
Cited by: 81
Author(s): María E. Figueroa, Mark Reimers, Reid F. Thompson, Kenny Ye, Yushan Li, Rebecca R. Selzer, Jakob Fridriksson, Elisabeth Paietta, Peter H. Wiernik, Roland D. Green, John M. Greally, Ari Melnick
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0024757

A Comprehensive Association Analysis of Homocysteine Metabolic Pathway Genes in Singaporean Chinese with Ischemic Stroke
Cited by: 18
Author(s): Hui-Qi Low, Christopher P.L.-H. Chen, Katherine Kasiman, Anbupalam Thalamuthu, Seok-Shin Ng, Jia Nee Foo, Hui-Meng Chang, Michael Wong, E. Shyong Tai, Jianjun Li
Software Mentions: 1
Published: about 13 years ago

10.1186/s13000-014-0212-x

The significance of ectopic crypt formation in the differential diagnosis of colorectal polyps
Cited by: 5
Author(s): Mi‐Jung Kim, Eunjung Lee, Sung-Min Chun, Se-Jin Jang, Do Sun Kim, Dong Hoon Lee, Eui Gon Youk
Software Mentions: 1
Published: almost 10 years ago

10.1002/ece3.5268

From microsatellites to single nucleotide polymorphisms for the genetic monitoring of a critically endangered sturgeon
Cited by: 19
Author(s): Séverine Roques, Émilie Chancerel, Christophe Boury, Maud Pierre, Marie‐Laure Acolas
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2014.00642

Epigenetic Function of Activation-Induced Cytidine Deaminase and Its Link to Lymphomagenesis
Cited by: 21
Author(s): Pilar M. Domínguez, Rita Shaknovich
Software Mentions: 1
Published: almost 10 years ago

10.3389/fnins.2017.00244

Effects of DARPP-32 Genetic Variation on Prefrontal Cortex Volume and Episodic Memory Performance
Cited by: 8
Author(s): Ninni Persson, Jonas Persson, Catharina Lavebratt, Håkan Fischer
Software Mentions: 1
Published: over 7 years ago

10.3389/fnins.2021.644943

ACTB Methylation in Blood as a Potential Marker for the Pre-clinical Detection of Stroke: A Prospective Nested Case-Control Study
Cited by: 8
Author(s): Chunlan Liu, Qiming Yin, Mengxia Li, Fan Yao, Chong Shen, Rongxi Yang
Software Mentions: 1
Published: over 3 years ago

10.3390/genes10060449

Single Nucleotide Polymorphisms of NUCB2 and Their Genetic Associations with Milk Production Traits in Dairy Cows
Cited by: 7
Author(s): Bo Han, Yǒulù Yuán, Yanhua Li, Lin Liu, Dongxiao Sun
Software Mentions: 1
Published: over 5 years ago

10.1007/s12026-015-8646-0

Single nucleotide polymorphisms in the FAM167A-BLK gene are associated with polymyositis/dermatomyositis in the Han Chinese population
Cited by: 16
Author(s): Si Chen, Wei Wu, Jing Li, Qian Wang, Yuan Li, Ziyan Wu, Wenjie Zheng, Qingjun Wu, Caimei Wu, Fengchun Zhang, Yongzhe Li
Software Mentions: 1
Published: over 9 years ago

10.1111/jcmm.13612

Common genetic variants in <scp>GAL</scp>,<scp> GAP</scp>43 and <scp>NRSN</scp>1 and interaction networks confer susceptibility to Hirschsprung disease
Cited by: 6
Author(s): Yang Wang, Wei Yan, Jun Wang, Ying Zhou, Jie Chen, Bei-Lin Gu, Wei Cai
Software Mentions: 1
Published: over 6 years ago

10.34172/joddd.2020.021

Association of MAPK4 and SOX1-OT gene polymorphisms with cleftlip palate in multiplex families: A genetic study
Cited by: 6
Author(s): Praveen Kumar Neela, Srinivas Reddy Gosla, Akhter Husain, Vasavi Mohan, Sravya Thumoju, Rajeshwari Bv
Software Mentions: 1
Published: over 4 years ago

10.1038/srep09755

Common Oncogene Mutations and Novel SND1-BRAF Transcript Fusion in Lung Adenocarcinoma from Never Smokers
Cited by: 39
Author(s): Jin Sung Jang, Adam M Lee, Jun Li, Hema Liyanage, Yanan Yang, Lixia Guo, Yan W. Asmann, Peter W. Li, Michele R. Erickson-Johnson, Yuta Sakai, Zhi Sun, Hyo Sung Jeon, Hayoung Hwang, Aaron O. Bungum, Eric S. Edell, Vernadette Simon, Karla Kopp, Bruce W. Eckloff, André M. Oliveira, Eric D. Wieben, Marie Christine Aubry, Eunhee S. Yi, Dennis A. Wigle, Robert B. Diasio, Ping Yang, Jin Jen
Software Mentions: 1
Published: over 9 years ago

10.1038/srep12619

Family-based analysis of eight susceptibility loci in polycystic ovary syndrome
Cited by: 11
Author(s): Shigang Zhao, Ye Tian, Xuan Gao, Xiuqing Zhang, Hongbin Liu, Li You, Yongzhi Cao, Shizhen Su, Wai‐Yee Chan, Yun Sun, Han Zhao, Zi‐Jiang Chen
Software Mentions: 1
Published: over 9 years ago

10.1038/srep26688

Allele-specific expression of mutated in colorectal cancer (MCC) gene and alternative susceptibility to colorectal cancer in schizophrenia
Cited by: 9
Author(s): Yang Wang, Yanyan Cao, Xin‐Yuan Huang, Tao Yu, Zhiyun Wei, John J. McGrath, Fei Xu, Yan Bi, Xingwang Li, Fengping Yang, Weidong Li, Xia Zou, Zhihai Peng, Yanzeng Xiao, Yan Zhang, Lin He, Guang He
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-37388-8

Mitochondrial haplogroups are not associated with diabetic retinopathy in a large Australian and British Caucasian sample
Cited by: 1
Author(s): Ebony Liu, Georgia Kaidonis, Mark C Gillies, Sotoodeh Abhary, Rohan W. Essex, John H Chang, Bishwanath Pal, Mark Daniell, Stewart Lake, Jolly Gilhotra, Nikolai Petrovsky, Alex W. Hewitt, Alicia J. Jenkins, Ecosse L. Lamoureux, Jonathan Gleadle, Kathryn P. Burdon, Jamie E Craig
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-019-49928-x

Differential effect of GLUT1 overexpression on survival and tumor immune microenvironment of human papilloma virus type 16-positive and -negative cervical cancer
Cited by: 15
Author(s): Byoung Hyuck Kim, Ji Hyun Chang
Software Mentions: 1
Published: about 5 years ago

10.3390/toxins11050298

Bacterial Lipopolysaccharide Induced Alterations of Genome-Wide DNA Methylation and Promoter Methylation of Lactation-Related Genes in Bovine Mammary Epithelial Cells
Cited by: 26
Author(s): Jingbo Chen, Yongjiang Wu, Yawang Sun, Xianwen Dong, Zili Wang, Zhiliang Zhu, Yan-Li Xiao, Guozhong Dong
Software Mentions: 1
Published: over 5 years ago

10.1038/s41398-018-0180-0

GABRA2 rs279858-linked variants are associated with disrupted structural connectome of reward circuits in heroin abusers
Cited by: 13
Author(s): Yan Sun, Yang Zhang, Dai Zhang, Suhua Chang, Rixing Jing, Weihua Yue, Lin Lü, Dong Chen, Yong Fan, Jie Shi
Software Mentions: 1
Published: over 6 years ago

10.1186/s13046-019-1380-z

Ambient fine particulate matter inhibits 15-lipoxygenases to promote lung carcinogenesis
Cited by: 19
Author(s): Mingyue Li, Lizhong Liu, Wende Li, Calvin S. H. Ng, Yi Liu, Angel Wing-Yan Kong, Zhili Zhao, Shanshan Wang, Haolong Qi, Jia Hao, Shengsheng Yang, Jing Du, Xiang Long, Raymond H. Ho, Ernest C.W. Chak, Innes Y.P. Wan, Tony Mok, Malcolm J. Underwood, Nirmal Kumar Gali, Zhi Ning, George G. Chen
Software Mentions: 1
Published: about 5 years ago

10.1186/1687-9856-2013-S1-P92

Variants of 11β-hydroxysteroid dehydrogenase (HSD11B) gene type 1 and 2 in Chinese obese adolescents
Cited by: 0
Author(s): Zou Chun
Software Mentions: 1
Published: about 11 years ago

10.3390/ijms18020295

Whole Exome Sequencing in Psoriasis Patients Contributes to Studies of Acitretin Treatment Difference
Cited by: 9
Author(s): Xinming Zhou, Yijing He, Yehong Kuang, Jie Li, Jianglin Zhang, Mingliang Chen, Wangqing Chen, Juan Su, Shuang Zhao, Panpan Li, Menglin Chen, Min Shen, Xiaoping Chen, Wu Zhu, Xiang Chen
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijms21041195

Metabolomics to Improve the Diagnostic Efficiency of Inborn Errors of Metabolism
Cited by: 29
Author(s): Dylan Mordaunt, D. J. Cox, Maria Fuller
Software Mentions: 1
Published: over 4 years ago

10.18632/oncotarget.7279

Loss of MEN1 activates DNMT1 implicating DNA hypermethylation as a driver of MEN1 tumorigenesis
Cited by: 27
Author(s): Ziqiang Yuan, Carmen Sánchez Claros, Masako Suzuki, Elaine C. Maggi, Justin D. Kaner, Noah S. Kinstlinger, Jolanta Gorecka, Thomas J. Quinn, Rula C. Geha, Amanda Corn, Jessica M. Pastoriza, Jun Qiang, Asha Adem, Hao Wu, Girum Alemu, Yi Du, Deyou Zheng, John M. Greally, Steven K. Libutti
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.12164

MMP-1 promoter polymorphism is associated with risk of radiation-induced lung injury in lung cancer patients treated with radiotherapy
Cited by: 15
Author(s): Bo Liu, Minxiao Yi, Yang Tang, Qingxu Liu, Hong Qian, Yanmei Zou, Ping Peng, Lu Zhang, Chunping Hu, Xianglin Yuan
Software Mentions: 1
Published: about 8 years ago

10.18632/oncotarget.20203

The impacts of genetic polymorphisms in genes of base excision repair pathway on the efficacy and acute toxicities of (chemo)radiotherapy in patients with nasopharyngeal carcinoma
Cited by: 17
Author(s): Jing Wang, Chengxian Guo, Xiaomeng Gong, Ao Fan, Yu‐Ling Huang, Lihua Huang, Yuchao Tang, Chunling Jiang, Xiaoxue Xie, Qing Dong, Huang Min, Jingao Li
Software Mentions: 1
Published: about 7 years ago

10.18632/oncotarget.21526

α7 nAChR mediated Fas demethylation contributes to prenatal nicotine exposure-induced programmed thymocyte apoptosis in mice
Cited by: 14
Author(s): Hanxiao Liu, Sha Li, Wen Qu, Hui-yi Yan, Xiaoru Wen, Ting Chen, Lifang Hou
Software Mentions: 1
Published: about 7 years ago

10.1002/path.5179

Cellular polarity modulates drug resistance in primary colorectal cancers via orientation of the multidrug resistance protein ABCB1
Cited by: 6
Author(s): Neil Ashley, Djamila Ouaret, Walter F. Bodmer
Software Mentions: 1
Published: almost 6 years ago

10.3390/jpm10040267

Genomic Association of Single Nucleotide Polymorphisms with Blood Pressure Response to Hydrochlorothiazide among South African Adults with Hypertension
Cited by: 1
Author(s): Charity Masilela, Brendon Pearce, Joven Jebio Ongole, Oladele Vincent Adeniyi, Mongi Benjeddou
Software Mentions: 1
Published: almost 4 years ago

10.3390/jpm11020104

Single Nucleotide Polymorphisms Associated with Metformin and Sulphonylureas’ Glycaemic Response among South African Adults with Type 2 Diabetes Mellitus
Cited by: 3
Author(s): Charity Masilela, Brendon Pearce, Joven Jebio Ongole, Oladele Vincent Adeniyi, Mongi Benjeddou
Software Mentions: 1
Published: over 3 years ago

10.1186/s12967-020-02273-4

Identification and clinical impact of potentially actionable somatic oncogenic mutations in solid tumor samples
Cited by: 10
Author(s): Sinéad Toomey, Aoife Carr, Mateusz Janusz Mezynski, Yasir Y. Elamin, Shereen Rafee, Mattia Cremona, Clare Morgan, Stephen F. Madden, Khairun I. Abdul-Jalil, Kathy Gately, Angela M. Farrelly, Elaine W. Kay, Susan Kennedy, Kenneth J. O’Byrne, Liam Grogan, Oscar S. Breathnach, Patrick G. Morris, Alex J. Eustace, Joanna Fay, Robert Cummins, Anthony O’Grady, Roshni Kalachand, Norma O’Donovan, Fergal C. Kelleher, Aine O’Reilly, Mark Doherty, John Crown, Bryan T. Hennessy
Software Mentions: 1
Published: over 4 years ago

10.1186/s12885-017-3089-8

Colorectal cancer surveillance in Hodgkin lymphoma survivors at increased risk of therapy-related colorectal cancer: study design
Cited by: 8
Author(s): Lisanne S. Rigter, Manon C.W. Spaander, Leon M.G. Moons, Tanya M. Bisseling, Berthe M.P. Aleman, Jan Paul de Boer, Pieternella J. Lugtenburg, Cécile P.M. Janus, Eefke Petersen, Judith M. Roesink, John Raemaekers, Richard W.M. van der Maazen, Annemieke Cats, Eveline M. A. Bleiker, Pétur Snæbjörnsson, Beatriz Carvalho, Iris Lansdorp‐Vogelaar, Katarzyna Jóźwiak, Hein te Riele, Gerrit A. Meijer, Flora E. van Leeuwen, Monique E. van Leerdam
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2407-14-772

Prognostication of patients with clear cell renal cell carcinomas based on quantification of DNA methylation levels of CpG island methylator phenotype marker genes
Cited by: 39
Author(s): Yingying Tian, Eri Arai, Masahiro Gotoh, Motokiyo Komiyama, Hiroyuki Fujimoto, Yae Kanai
Software Mentions: 1
Published: about 10 years ago

10.1186/s12863-020-00923-6

DNA methylation of CpG sites in the chicken KLF7 promoter and Exon 2 in association with mRNA expression in abdominal adipose tissue and blood metabolic indicators
Cited by: 4
Author(s): Zhiwei Zhang, Cunxi Nie, Yuechan Chen, Yanzhe Dong, Tao Lin
Software Mentions: 1
Published: about 4 years ago

10.1186/1471-2164-12-231

Genome-wide survey reveals dynamic widespread tissue-specific changes in DNA methylation during development
Cited by: 121
Author(s): Ping Liang, Fei Song, Srimoyee Ghosh, Evan Morien, Maochun Qin, Saleh Mahmood, Kyoko Fujiwara, Jun Igarashi, Hiroki Nagase, William A. Held
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2350-12-23

Systematic search for enhancer elements and somatic allelic imbalance at seven low-penetrance colorectal cancer predisposition loci
Cited by: 17
Author(s): Iina Niittymäki, Sari Tuupanen, Yilong Li, Heikki Järvinen, Jukka–Pekka Mecklin∥, Ian Tomlinson, Richard S. Houlston, Auli Karhu, Lauri A. Aaltonen
Software Mentions: 1
Published: over 13 years ago

10.1186/s12881-019-0904-x

Association between lncRNA H19 rs217727 polymorphism and the risk of cancer: an updated meta-analysis
Cited by: 5
Author(s): Xue Wang, Jialing Zhong, Fang Chen, Kang Hj, Song Yung Sun, Yuanxiu Leng, Xumei Chen, Feng-Jiao Gan, Yana Pan, Qin Luo
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12881-014-0092-7

Association study of two inflammation-related polymorphisms with susceptibility to hepatocellular carcinoma: a meta-analysis
Cited by: 14
Author(s): Jiajing Liu, Bo Xie, Shuilian Chen, Feng Jiang, Meng Wang
Software Mentions: 1
Published: about 10 years ago

10.1186/s12882-020-02052-9

Clinical and genetic risk factors for new-onset diabetes mellitus after transplantation (NODAT) in major transplant centres in Malaysia
Cited by: 6
Author(s): Rhanye Mac Guad, Andrew W. Taylor‐Robinson, Yuan Seng Wu, Siew Hua Gan, Nur Lisa Zaharan, Roma Choudhury Basu, Constance Liew Sat Lin, Wan Ahmad Hafiz Wan Md Adnan
Software Mentions: 1
Published: about 4 years ago

10.1186/1471-2229-8-33

Gene expression analyses in maize inbreds and hybrids with varying levels of heterosis
Cited by: 147
Author(s): Robert M. Stupar, Jack M. Gardiner, Aaron Oldre, William J. Haun, Vicki L. Chandler, Nathan M. Springer
Software Mentions: 1
Published: over 16 years ago

10.1186/1744-9081-8-31

A genetic association study of DNA methylation levels in the DRD4 gene region finds associations with nearby SNPs
Cited by: 35
Author(s): Sophia J. Docherty, Oliver S. P. Davis, Claire M. A. Haworth, Robert Plomin, Ursula M. D’Souza, Jonathan Mill
Software Mentions: 1
Published: almost 13 years ago

10.1155/2014/483759

A 3’UTR Polymorphism of IL-6R Is Associated with Chinese Pediatric Tuberculosis
Cited by: 6
Author(s): Chen Shen, Hui Qi, Lin Sun, Jing Xiao, Qin Yin, Weiwei Jiao, Xirong Wu, Jiang Tian, Rui Han, Adong Shen
Software Mentions: 1
Published: almost 11 years ago

10.3390/brainsci9090236

Timing-Dependent Protection of Swimming Exercise against d-Galactose-Induced Aging-Like Impairments in Spatial Learning/Memory in Rats
Cited by: 7
Author(s): Xue Li, Lu Wang, Shuling Zhang, Xiao Hu, Huijun Yang, Lei Xi
Software Mentions: 1
Published: about 5 years ago

10.1002/cam4.564

Genetic variants in <scp>PI</scp> 3K/ <scp>AKT</scp> pathway are associated with severe radiation pneumonitis in lung cancer patients treated with radiation therapy
Cited by: 29
Author(s): Yang Tang, Bo Liu, Jing Li, Huanlei Wu, Ju Dong Yang, Zhijie Xiao, Mingxiao Yi, Qianxia Li, Shiying Yu, Xianglin Yuan
Software Mentions: 1
Published: almost 9 years ago

10.1002/cam4.2702

Patterns of germline and somatic mutations in 16 genes associated with mismatch repair function or containing tandem repeat sequences
Cited by: 5
Author(s): Shih Ching Chang, Yuan Tzu Lan, Pei Lin, Shung Haur Yang, Chun-Ming Lin, Wen Yi Liang, Wei Shone Chen, Jeng Kai Jiang, Jen Kou Lin
Software Mentions: 1
Published: almost 5 years ago

10.3390/life11090886

The Link between Type 2 Diabetes Mellitus and the Polymorphisms of Glutathione-Metabolizing Genes Suggests a New Hypothesis Explaining Disease Initiation and Progression
Cited by: 13
Author(s): Iuliia Azarova, Elena Klyosova, А. В. Полоников
Software Mentions: 1
Published: about 3 years ago

10.3390/life11050382

CARD8 SNP rs11672725 Identified as a Potential Genetic Variant for Adult-Onset Still’s Disease
Cited by: 3
Author(s): Wei‐Ting Hung, Yiming Chen, Shuen‐Iu Hung, Hsin‐Hua Chen, Ning‐Rong Gung, Chia‐Wei Hsieh, Kuo‐Tung Tang, Der‐Yuan Chen
Software Mentions: 1
Published: over 3 years ago

Projects: bioconductor: MassArray

Papers Mentioning MassArray 84