Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/1471-2105-15-S1-S11

https://doi.org/10.1186/1471-2105-15-S1-S11

The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again

Cited by: 19
Author(s): Alejandra N. González-Beltrán, Steffen Neumann, Eamonn Maguire, Susanna-Assunta Sansone, Philippe Rocca-Serra
Published: almost 11 years ago

Software Mentions 11

bioconductor: ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962
bioconductor: Biobase
Biobase: Base functions for Bioconductor
Papers that mentioned: 104
bioconductor: biocViews
Categorized views of R package repositories
Papers that mentioned: 4
bioconductor: CAMERA
Collection of annotation related methods for mass spectrometry data
Papers that mentioned: 429
bioconductor: clippda
A package for the clinical proteomic profiling data analysis
Papers that mentioned: 1
bioconductor: MassArray
Analytical Tools for MassArray Data
Papers that mentioned: 84
bioconductor: MassSpecWavelet
Peak Detection for Mass Spectrometry data using wavelet-based algorithms
Papers that mentioned: 19
bioconductor: Risa
Converting experimental metadata from ISA-tab into Bioconductor data structures
Papers that mentioned: 2
bioconductor: xcms
LC-MS and GC-MS Data Analysis
Papers that mentioned: 68
pypi: ISA
ISA (Independent Statistics Aggregator) collects node statistics for a cluster of nodes.
Papers that mentioned: 137
pypi: xcms
calculated extended contact mode score provided the query and template protein-ligand structures
Papers that mentioned: 68