Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: MassSpecWavelet

https://packages.ecosyste.ms/registries/bioconductor.org/packages/MassSpecWavelet

Peak Detection for Mass Spectrometry data using wavelet-based algorithms
1 version
Latest release: about 1 year ago
2 dependent packages
171,042 downloads total

Papers Mentioning MassSpecWavelet 19

10.3390/metabo9100200

The metaRbolomics Toolbox in Bioconductor and beyond
Cited by: 61
Author(s): Jan Stanstrup, Corey D. Broeckling, Rick Helmus, Nils Hoffmann, Ewy A. Mathé, Thomas Naake, Luca Nicolotti, Kristian Peters, Johannes Michael Rainer, Reza M. Salek, Tobias Schulze, Emma L. Schymanski, Michael A. Stravs, Etienne Thévenot, Hendrik Treutler, Ralf Weber, Egon Willighagen, Michael Witting, Steffen Neumann
Software Mentions: 92
Published: about 5 years ago

10.1002/pmic.201400392

Visualization of proteomics data using R and Bioconductor
Cited by: 46
Author(s): Laurent Gatto, Lisa M. Breckels, Thomas Naake, Sebastian Gibb
Software Mentions: 62
Published: over 9 years ago

10.1186/1471-2105-15-S1-S11

The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again
Cited by: 19
Author(s): Alejandra N. González-Beltrán, Steffen Neumann, Eamonn Maguire, Susanna-Assunta Sansone, Philippe Rocca-Serra
Software Mentions: 11
Published: almost 11 years ago

10.1371/journal.pone.0223909

Effects of MCHM on yeast metabolism
Cited by: 6
Author(s): Amaury Pupo, Kang‐Mo Ku, Jennifer E. G. Gallagher
Software Mentions: 10
Published: about 5 years ago

10.1007/s11306-017-1242-7

Navigating freely-available software tools for metabolomics analysis
Cited by: 165
Author(s): Rachel Spicer, Reza M. Salek, Pablo Moreno-Ger, Daniel Cañueto, Christoph Steinbeck
Software Mentions: 8
Published: over 7 years ago

10.3389/fnins.2012.00187

Systems Biology, Bioinformatics, and Biomarkers in Neuropsychiatry
Cited by: 43
Author(s): Ali Alawieh, Fadi A. Zaraket, Jianliang Li, Stefania Mondello, Amaly Nokkari, Mahdi Razafsha, Bilal H. Fadlallah, Rose‐Mary Boustany, Firas Kobeissy
Software Mentions: 7
Published: almost 13 years ago

10.1186/s12859-014-0374-2

Identifying and quantifying metabolites by scoring peaks of GC-MS data
Cited by: 12
Author(s): Raphael Aggio, Arno Mayor, S Reade, Chris Probert, Katya Ruggiero
Software Mentions: 6
Published: about 10 years ago

10.1002/jssc.202000011

Recent applications of chemometrics in one‐ and two‐dimensional chromatography
Cited by: 37
Author(s): Tijmen S. Bos, Wouter C. Knol, Stef R.A. Molenaar, Leon E. Niezen, Peter J. Schoenmakers, Govert W. Somsen, Bob W.J. Pirok
Software Mentions: 5
Published: almost 5 years ago

10.1186/s13567-020-00782-0

Genetic diversity and population structure of Tenacibaculum maritimum, a serious bacterial pathogen of marine fish: from genome comparisons to high throughput MALDI-TOF typing
Cited by: 19
Author(s): Sébastien Bridel, Frédéric Bourgeon, Arnaud Marie, Denis Saulnier, Sophie Pasek, Pierre Nicolas, Jean‐François Bernardet, Éric Duchaud
Software Mentions: 5
Published: over 4 years ago

10.1155/2010/896718

Feature Detection Techniques for Preprocessing Proteomic Data
Cited by: 4
Author(s): Kimberly F. Sellers, Jeffrey C. Miecznikowski
Software Mentions: 5
Published: almost 15 years ago

10.1186/s12859-015-0752-4

Mass-Up: an all-in-one open software application for MALDI-TOF mass spectrometry knowledge discovery
Cited by: 85
Author(s): Hugo López-Fernández, Hugo M. Santos, José Luís Capelo, Florentino Fdez-Riverola, Daniel Glez-Peña, Miguel Reboiro-Jato
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.pcbi.1006018

speaq 2.0: A complete workflow for high-throughput 1D NMR spectra processing and quantification
Cited by: 40
Author(s): Charlie Beirnaert, Pieter Meysman, Trung Nghia Vu, Nina Hermans, Sandra Apers, Luc Pieters, Adrian Covaci, Kris Laukens
Software Mentions: 3
Published: almost 7 years ago

10.1186/1471-2105-12-405

An integrated workflow for robust alignment and simplified quantitative analysis of NMR spectrometry data
Cited by: 65
Author(s): Trung Nghia Vu, Dirk Valkenborg, Koen Smets, Kim A. Verwaest, Roger Dommisse, Filip Lemière, A. Verschoren, Bart Goethals, Kris Laukens
Software Mentions: 3
Published: about 13 years ago

10.1007/s00294-016-0642-y

A conserved role of the RSC chromatin remodeler in the establishment of nucleosome-depleted regions
Cited by: 11
Author(s): Carlo Yague-Sanz, Enrique Vázquez, Mar Sánchez, Francisco Antequera, Damien Hermand
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0026294

Reproducible Cancer Biomarker Discovery in SELDI-TOF MS Using Different Pre-Processing Algorithms
Cited by: 9
Author(s): Jinfeng Zou, Hong Guan, Xinwu Guo, Lin Zhang, Chen Yao, Jing Wang, Zheng Guo
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0012493

A Novel Preprocessing Method Using Hilbert Huang Transform for MALDI-TOF and SELDI-TOF Mass Spectrometry Data
Cited by: 22
Author(s): Li Wu, Hsin Hao Chen, Jorng-Tzong Horng, Chen Lin, Norden E. Huang, Yu Cheng, Kuang Fu Cheng
Software Mentions: 2
Published: over 14 years ago

10.1186/1471-2105-11-512

Quadratic variance models for adaptively preprocessing SELDI-TOF mass spectrometry data
Cited by: 2
Author(s): Vincent A. Emanuele, Brian M. Gurbaxani
Software Mentions: 1
Published: about 14 years ago

10.1186/1471-2105-9-S9-S15

An iterative block-shifting approach to retention time alignment that preserves the shape and area of gas chromatography-mass spectrometry peaks
Cited by: 28
Author(s): Minho Chae, Robert J. Shmookler Reis, John J. Thaden
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0134256

Signal Partitioning Algorithm for Highly Efficient Gaussian Mixture Modeling in Mass Spectrometry
Cited by: 32
Author(s): Andrzej Polański, Michał Marczyk, Monika Pietrowska, Piotr Widłak, Joanna Polańska
Software Mentions: 1
Published: over 9 years ago