Packages with Software Mentions in Scientific Papers

pypi: FIAT

FInite element Automatic Tabulator
Papers that mentioned: 10

Very Likely Science (65)

pypi: genbox

input data generator for ``boxmox``
Papers that mentioned: 10

Very Likely Science (80)

cran: Rvcg

Manipulations of Triangular Meshes Based on the 'VCGLIB' API
Papers that mentioned: 10

Very Likely Science (75)

cran: VFS

Vegetated Filter Strip and Erosion Model
Papers that mentioned: 10

Very Likely Science (95)

cran: Replication

Test Replications by Means of the Prior Predictive p-Value
Papers that mentioned: 10

Very Likely Science (75)

pypi: QTool

My short description for my project.
Papers that mentioned: 10

Very Likely Science (65)

pypi: ConTrack

Contour Tracking of circulation anomalies in Weather and Climate Data.
Papers that mentioned: 10

Very Likely Science (97)

cran: lavaan.survey

Complex Survey Structural Equation Modeling (SEM)
Papers that mentioned: 10

Very Likely Science (85)

cran: bigmemory

Manage Massive Matrices with Shared Memory and Memory-Mapped Files
Papers that mentioned: 10

Very Likely Science (77)

cran: Stem

Spatio-temporal models in R
Papers that mentioned: 10

Very Likely Science (75)

cran: LDlinkR

Calculating Linkage Disequilibrium (LD) in Human Population Groups of Interest
Papers that mentioned: 10

Very Likely Science (83)

bioconductor: Director

A dynamic visualization tool of multi-level data
Papers that mentioned: 10

Very Likely Science (100)

pypi: TSI

Modules for use with the TSI 4000 Series flow meter
Papers that mentioned: 10

Very Likely Science (65)

pypi: env

Environment Variables for Humans
Papers that mentioned: 10

Very Likely Science (65)

pypi: oligotyping

The oligotyping and minimum entropy decomposition (MED) pipeline for the analysis of marker gene amplicons
Papers that mentioned: 10

Very Likely Science (90)

cran: clue

Cluster Ensembles
Papers that mentioned: 10

Very Likely Science (75)

pypi: delta

Human friendly context aware duration parsing library
Papers that mentioned: 10

Very Likely Science (65)

pypi: Ver

Papers that mentioned: 10

Very Likely Science (65)

cran: DCCA

Detrended Fluctuation and Detrended Cross-Correlation Analysis
Papers that mentioned: 10

Very Likely Science (85)

pypi: descr

HTML pretty-printing of Python structures
Papers that mentioned: 10

Very Likely Science (65)

bioconductor: BRAIN

Baffling Recursive Algorithm for Isotope distributioN calculations
Papers that mentioned: 10

Very Likely Science (100)

cran: RTL

Risk Tool Library - Trading, Risk, 'Analytics' for Commodities
Papers that mentioned: 10

Likely Science (50)

cran: conStruct

Models Spatially Continuous and Discrete Population Genetic Structure
Papers that mentioned: 10

Very Likely Science (93)

pypi: NILM

Non Intrusive Load Monitoring
Papers that mentioned: 10

Very Likely Science (65)

cran: QFASA

Quantitative Fatty Acid Signature Analysis
Papers that mentioned: 10

Very Likely Science (85)

cran: SimInf

A Framework for Data-Driven Stochastic Disease Spread Simulations
Papers that mentioned: 10

Very Likely Science (100)

pypi: pa

Paper Arxiv: A command line based academic paper management tool.
Papers that mentioned: 10

Very Likely Science (65)

pypi: native

Papers that mentioned: 10

Very Likely Science (65)

pypi: ips

UNKNOWN
Papers that mentioned: 10

Very Likely Science (65)

cran: REAT

Regional Economic Analysis Toolbox
Papers that mentioned: 10

Very Likely Science (85)

cran: shinystan

Interactive Visual and Numerical Diagnostics and Posterior Analysis for Bayesian Models
Papers that mentioned: 10

Very Likely Science (93)

pypi: icc

A Python implementation to calculate the ICC
Papers that mentioned: 10

Very Likely Science (80)

pypi: genorm

GenORM (simple functional MySQL/PostgreSQL ORM)
Papers that mentioned: 10

Very Likely Science (65)

pypi: hichipper

Processing HiChIP data into loops.
Papers that mentioned: 10

Very Likely Science (100)

cran: sda

Shrinkage Discriminant Analysis and CAT Score Variable Selection
Papers that mentioned: 10

Very Likely Science (65)

cran: SGB

Simplicial Generalized Beta Regression
Papers that mentioned: 10

Very Likely Science (85)

cran: lqmm

Linear Quantile Mixed Models
Papers that mentioned: 10

Very Likely Science (75)

cran: abind

Combine Multidimensional Arrays
Papers that mentioned: 10

Very Likely Science (75)

bioconductor: RMassBank

Workflow to process tandem MS files and build MassBank records
Papers that mentioned: 10

Very Likely Science (90)

pypi: z

Papers that mentioned: 10

Unlikely Science (0)

bioconductor: Prostar

Provides a GUI for DAPAR
Papers that mentioned: 10

Very Likely Science (90)

pypi: jade

Fast and Simple jade(pug) to html converter in C
Papers that mentioned: 10

Very Likely Science (65)

cran: InterVA4

Replicate and Analyse 'InterVA4'
Papers that mentioned: 10

Very Likely Science (75)

pypi: Sixpack

A/B testing framework under active development at SeatGeek
Papers that mentioned: 10

Very Likely Science (65)

pypi: openpyxl

A Python library to read/write Excel 2010 xlsx/xlsm files
Papers that mentioned: 10

Very Likely Science (65)

cran: updog

Flexible Genotyping for Polyploids
Papers that mentioned: 10

Very Likely Science (100)

bioconductor: PROPS

PRObabilistic Pathway Score (PROPS)
Papers that mentioned: 10

Very Likely Science (100)

pypi: PLC

Local Package for Parsian Language Center
Papers that mentioned: 10

Very Likely Science (65)

pypi: auto-sklearn

Automated machine learning.
Papers that mentioned: 10

Very Likely Science (100)

pypi: AFEM

A Finite Element Python implementation
Papers that mentioned: 10

Very Likely Science (100)

pypi: FlowCal

Flow Cytometry Calibration Library
Papers that mentioned: 10

Very Likely Science (100)

cran: pacman

Package Management Tool
Papers that mentioned: 10

Very Likely Science (100)

cran: ips

Interfaces to Phylogenetic Software in R
Papers that mentioned: 10

Very Likely Science (85)

bioconductor: MLInterfaces

Uniform interfaces to R machine learning procedures for data in Bioconductor containers
Papers that mentioned: 10

Very Likely Science (93)

bioconductor: nucleR

Nucleosome positioning package for R
Papers that mentioned: 10

Very Likely Science (90)

pypi: Argot

argot text markup -- a markdown dialect
Papers that mentioned: 10

Very Likely Science (65)

pypi: sds

Stochastic Diffusion Search
Papers that mentioned: 10

Very Likely Science (80)

bioconductor: RmiR

Papers that mentioned: 10

Unlikely Science (0)

pypi: bx-python

Tools for manipulating biological data, particularly multiple sequence alignments
Papers that mentioned: 10

Very Likely Science (100)

pypi: sourmash

tools for comparing biological sequences with k-mer sketches
Papers that mentioned: 10

Very Likely Science (100)

pypi: FUCHS

FUll circular RNA CHaracterization from RNA-Seq
Papers that mentioned: 10

Very Likely Science (100)

bioconductor: DNAshapeR

High-throughput prediction of DNA shape features
Papers that mentioned: 10

Very Likely Science (73)

pypi: boost

Boost automatically toots from Mastodon users
Papers that mentioned: 10

Likely Science (40)

cran: My.stepwise

Stepwise Variable Selection Procedures for Regression Analysis
Papers that mentioned: 10

Very Likely Science (85)

cran: MDSS

Modeling Human Dentin Serial Sectioning
Papers that mentioned: 10

Very Likely Science (85)

cran: Imap

Interactive Mapping
Papers that mentioned: 10

Very Likely Science (75)

pypi: clue

Cloudify development environment CLI
Papers that mentioned: 10

Very Likely Science (65)

cran: reticulate

Interface to 'Python'
Papers that mentioned: 10

Very Likely Science (100)

pypi: zenodo

Zenodo - Research. Shared.
Papers that mentioned: 10

Very Likely Science (100)

pypi: Pint

Physical quantities module
Papers that mentioned: 10

Very Likely Science (80)

pypi: read

Read files faster
Papers that mentioned: 10

Very Likely Science (65)

pypi: mbed

Arm Mbed Command Line Interface
Papers that mentioned: 10

Very Likely Science (100)

pypi: NFSim

Neurofeedback simulation
Papers that mentioned: 10

Likely Science (50)

pypi: WB

A CGI program to manage 'Billboards' where documents can beposted (and edited and removed) through a simple WEB interface.
Papers that mentioned: 10

Unlikely Science (15)

cran: numDeriv

Accurate Numerical Derivatives
Papers that mentioned: 10

Very Likely Science (85)

pypi: surfer

surF - Fourier surrogate modeling
Papers that mentioned: 10

Very Likely Science (75)

cran: timereg

Flexible Regression Models for Survival Data
Papers that mentioned: 10

Very Likely Science (85)

pypi: sigma

Numerical methods in Python
Papers that mentioned: 10

Very Likely Science (90)

cran: treemapify

Draw Treemaps in 'ggplot2'
Papers that mentioned: 10

Very Likely Science (75)

pypi: water

Apply watermarks to images
Papers that mentioned: 10

Very Likely Science (65)

cran: GHap

Genome-Wide Haplotyping
Papers that mentioned: 10

Very Likely Science (75)

pypi: tensorflow-gpu

Removed: please install "tensorflow" instead.
Papers that mentioned: 10

Very Likely Science (80)

pypi: lightgbm

LightGBM Python Package
Papers that mentioned: 10

Very Likely Science (100)

cran: SII

Papers that mentioned: 10

Unlikely Science (0)

pypi: MDB

Browse imdb data for a folder full of movies!
Papers that mentioned: 10

Very Likely Science (65)

cran: oce

Analysis of Oceanographic Data
Papers that mentioned: 10

Very Likely Science (100)

pypi: python-igraph

High performance graph data structures and algorithms (legacy package)
Papers that mentioned: 10

Very Likely Science (100)

pypi: Azimuth

Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency
Papers that mentioned: 10

Very Likely Science (75)

cran: MNM

Multivariate Nonparametric Methods. An Approach Based on Spatial Signs and Ranks
Papers that mentioned: 10

Very Likely Science (93)

cran: MCMC.qpcr

Bayesian Analysis of qRT-PCR Data
Papers that mentioned: 10

Very Likely Science (93)

cran: CoordinateCleaner

Automated Cleaning of Occurrence Records from Biological Collections
Papers that mentioned: 10

Very Likely Science (90)

cran: ERSA

Exploratory Regression 'Shiny' App
Papers that mentioned: 10

Very Likely Science (85)

pypi: WebApp

Create and/or Edit WebApp HTML Files in Python.
Papers that mentioned: 10

Very Likely Science (65)

cran: openair

Tools for the Analysis of Air Pollution Data
Papers that mentioned: 10

Very Likely Science (100)

cran: EMbC

Expectation-Maximization Binary Clustering
Papers that mentioned: 10

Very Likely Science (75)

pypi: Africa

It's just a name snipe.
Papers that mentioned: 10

Very Likely Science (65)

bioconductor: motifStack

Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
Papers that mentioned: 10

Very Likely Science (98)

cran: pa

Performance Attribution for Equity Portfolios
Papers that mentioned: 10

Likely Science (50)

bioconductor: Clomial

Infers clonal composition of a tumor
Papers that mentioned: 10

Very Likely Science (98)

pypi: abstrackr

Web-based Citation Screening Tool
Papers that mentioned: 10

Very Likely Science (65)