Packages with Software Mentions in Scientific Papers | Ecosyste.ms: Papers

pypi: amira

Automated Malware Incident Response and Analysis
Papers that mentioned: 10

Very Likely Science (75)

cran: digest

Create Compact Hash Digests of R Objects
Papers that mentioned: 10

Very Likely Science (100)

cran: chron

Chronological Objects which Can Handle Dates and Times
Papers that mentioned: 10

Likely Science (50)

cran: MVB

Mutivariate Bernoulli log-linear model
Papers that mentioned: 10

Very Likely Science (75)

pypi: abstrackr

Web-based Citation Screening Tool
Papers that mentioned: 10

Very Likely Science (65)

pypi: oligotyping

The oligotyping and minimum entropy decomposition (MED) pipeline for the analysis of marker gene amplicons
Papers that mentioned: 10

Very Likely Science (90)

cran: lavaan.survey

Complex Survey Structural Equation Modeling (SEM)
Papers that mentioned: 10

Very Likely Science (85)

cran: abind

Combine Multidimensional Arrays
Papers that mentioned: 10

Very Likely Science (75)

cran: A3

Accurate, Adaptable, and Accessible Error Metrics for Predictive Models
Papers that mentioned: 10

Very Likely Science (83)

cran: enviPat

Isotope Pattern, Profile and Centroid Calculation for Mass Spectrometry
Papers that mentioned: 10

Very Likely Science (75)

pypi: Aphid

A toolkit for working with nested data types
Papers that mentioned: 10

Very Likely Science (65)

pypi: multitest

Multiprocess Unittest Runner
Papers that mentioned: 10

Very Likely Science (65)

cran: Stem

Spatio-temporal models in R
Papers that mentioned: 10

Very Likely Science (75)

bioconductor: GenomicInteractions

Utilities for handling genomic interaction data
Papers that mentioned: 10

Very Likely Science (100)

cran: DCCA

Detrended Fluctuation and Detrended Cross-Correlation Analysis
Papers that mentioned: 10

Very Likely Science (85)

cran: lqmm

Linear Quantile Mixed Models
Papers that mentioned: 10

Very Likely Science (75)

pypi: DeepCell

Deep learning for single cell image segmentation
Papers that mentioned: 10

Very Likely Science (100)

cran: pack

Convert values to/from raw vectors
Papers that mentioned: 10

Very Likely Science (75)

pypi: concat

An experimental concatenative Python-based programming language
Papers that mentioned: 10

Very Likely Science (75)

bioconductor: Director

A dynamic visualization tool of multi-level data
Papers that mentioned: 10

Very Likely Science (100)

cran: hzar

Hybrid Zone Analysis using R
Papers that mentioned: 10

Very Likely Science (85)

bioconductor: Harman

The removal of batch effects from datasets using a PCA and constrained optimisation based technique
Papers that mentioned: 10

Very Likely Science (98)

pypi: delta

Human friendly context aware duration parsing library
Papers that mentioned: 10

Very Likely Science (65)

pypi: screen

Screen width and so on
Papers that mentioned: 10

Very Likely Science (65)

pypi: Ball

Ball: A Python Package for Detecting Distribution Difference and Association in Metric Spaces
Papers that mentioned: 10

Very Likely Science (100)

pypi: contrast

Light weight data acquisition framework for orchestrating beamline experiments.
Papers that mentioned: 10

Very Likely Science (90)

cran: diagmeta

Meta-Analysis of Diagnostic Accuracy Studies with Several Cutpoints
Papers that mentioned: 10

Very Likely Science (100)

cran: PPRL

Privacy Preserving Record Linkage
Papers that mentioned: 10

Very Likely Science (75)

pypi: gmsh

Gmsh is a three-dimensional finite element mesh generator with built-in pre- and post-processing facilities.
Papers that mentioned: 10

Likely Science (55)

pypi: decipher

Package for easier access to the Forsta Surveys REST API
Papers that mentioned: 10

Very Likely Science (65)

cran: OSTE

Optimal Survival Trees Ensemble
Papers that mentioned: 10

Very Likely Science (83)

pypi: descr

HTML pretty-printing of Python structures
Papers that mentioned: 10

Very Likely Science (65)

pypi: cvx

OpenCV 'extension' with routinely used methods
Papers that mentioned: 10

Very Likely Science (65)

cran: fc

Standard Evaluation-Based Multivariate Function Composition
Papers that mentioned: 10

Very Likely Science (100)

cran: phylotools

Phylogenetic Tools for Eco-Phylogenetics
Papers that mentioned: 10

Very Likely Science (85)

cran: Ball

Statistical Inference and Sure Independence Screening via Ball Statistics
Papers that mentioned: 10

Very Likely Science (100)

pypi: chatbot

Allows users on wikia wikis to create a chatbot for Special:Chat
Papers that mentioned: 10

Unlikely Science (15)

cran: Kendall

Kendall Rank Correlation and Mann-Kendall Trend Test
Papers that mentioned: 10

Very Likely Science (85)

pypi: Gallery

Convert photos and videos for use on the web, integrates with SiteTool to produce static HTML galleries.
Papers that mentioned: 10

Very Likely Science (65)

cran: BaSTA

Age-Specific Survival Analysis from Incomplete Capture-Recapture/Recovery Data
Papers that mentioned: 10

Very Likely Science (85)

cran: BSS

Brownian Semistationary Processes
Papers that mentioned: 10

Very Likely Science (83)

pypi: rxncon

The reaction-contingency framework for cellular signalling processes.
Papers that mentioned: 10

Very Likely Science (90)

cran: QGglmm

Estimate Quantitative Genetics Parameters from Generalised Linear Mixed Models
Papers that mentioned: 10

Very Likely Science (100)

pypi: FiPy

A finite volume PDE solver in Python
Papers that mentioned: 10

Very Likely Science (80)

cran: PurBayes

Bayesian Estimation of Tumor Purity and Clonality
Papers that mentioned: 10

Very Likely Science (85)

pypi: jl

Library for parsing JSON lines.
Papers that mentioned: 10

Very Likely Science (65)

cran: PRIMAL

Parametric Simplex Method for Sparse Learning
Papers that mentioned: 10

Very Likely Science (75)

bioconductor: miRBaseConverter

A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions
Papers that mentioned: 10

Very Likely Science (87)

cran: adaptivetau

Tau-Leaping Stochastic Simulation
Papers that mentioned: 10

Very Likely Science (93)

cran: AWR

'AWS' Java 'SDK' for R
Papers that mentioned: 10

Very Likely Science (75)

pypi: gen

Generate files from a template
Papers that mentioned: 10

Very Likely Science (65)

cran: PReMiuM

Dirichlet Process Bayesian Clustering, Profile Regression
Papers that mentioned: 10

Very Likely Science (85)

pypi: Chromosome

Evolutionary Algorithm Framework in Python
Papers that mentioned: 10

Very Likely Science (65)

pypi: genometools

GenomeTools: A Python Toolkit for Working with Genomic Data.
Papers that mentioned: 10

Very Likely Science (100)

cran: RJSONIO

Serialize R Objects to JSON, JavaScript Object Notation
Papers that mentioned: 10

Very Likely Science (75)

pypi: openair

This project is to fetch data from the official Silverlight application of Ministry of Environmental Protection of China (http://106.37.208.233:20035/), which publish realtime air quality. 本项目旨在方便地获取官方发布的中国空气质量数据。
Papers that mentioned: 10

Very Likely Science (65)

cran: rsatscan

Tools, Classes, and Methods for Interfacing with 'SaTScan' Stand-Alone Software
Papers that mentioned: 10

Very Likely Science (75)

cran: SimInf

A Framework for Data-Driven Stochastic Disease Spread Simulations
Papers that mentioned: 10

Very Likely Science (100)

pypi: native

Papers that mentioned: 10

Very Likely Science (65)

pypi: TSI

Modules for use with the TSI 4000 Series flow meter
Papers that mentioned: 10

Very Likely Science (65)

pypi: NESTML

NESTML is a domain specific language that supports the specification of neuron models in a precise and concise syntax, based on the syntax of Python. Model equations can either be given as a simple string of mathematical notation or as an algorithm written in the built-in procedural language. The equations are analyzed by NESTML to compute an exact solution if possible or use an appropriate numeric solver otherwise.
Papers that mentioned: 10

Very Likely Science (75)

pypi: pathfinder

pathfinder – a simpler os.walk
Papers that mentioned: 10

Likely Science (40)

cran: shinystan

Interactive Visual and Numerical Diagnostics and Posterior Analysis for Bayesian Models
Papers that mentioned: 10

Very Likely Science (93)

pypi: lin

a pip-installable package example
Papers that mentioned: 10

Very Likely Science (65)

cran: REAT

Regional Economic Analysis Toolbox
Papers that mentioned: 10

Very Likely Science (85)

pypi: env

Environment Variables for Humans
Papers that mentioned: 10

Very Likely Science (65)

cran: TITAN2

Threshold Indicator Taxa Analysis
Papers that mentioned: 10

Very Likely Science (60)

pypi: hichipper

Processing HiChIP data into loops.
Papers that mentioned: 10

Very Likely Science (100)

pypi: libtiff

PyLibTiff: a Python tiff library.
Papers that mentioned: 10

Very Likely Science (100)

cran: sda

Shrinkage Discriminant Analysis and CAT Score Variable Selection
Papers that mentioned: 10

Very Likely Science (65)

cran: suncalc

Compute Sun Position, Sunlight Phases, Moon Position and Lunar Phase
Papers that mentioned: 10

Very Likely Science (90)

pypi: kmers

Bioinformatic k-mer analysis
Papers that mentioned: 10

Very Likely Science (90)

pypi: indigo

Fast linear operators for image reconstruction.
Papers that mentioned: 10

Very Likely Science (85)

pypi: PADS

Python Algorithms and Data Structures
Papers that mentioned: 10

Very Likely Science (75)

pypi: sma

Package for analysing social-ecological networks
Papers that mentioned: 10

Very Likely Science (75)

pypi: NeuroTools

NeuroTools is a collection of tools to support all tasks associated with the analysis of neural activity - from neurophysiology to neural simulations.
Papers that mentioned: 10

Very Likely Science (90)

bioconductor: RmiR

Papers that mentioned: 10

Unlikely Science (0)

cran: pacman

Package Management Tool
Papers that mentioned: 10

Very Likely Science (100)

cran: reticulate

Interface to 'Python'
Papers that mentioned: 10

Very Likely Science (100)

cran: CoordinateCleaner

Automated Cleaning of Occurrence Records from Biological Collections
Papers that mentioned: 10

Very Likely Science (90)

bioconductor: motifStack

Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
Papers that mentioned: 10

Very Likely Science (98)

cran: Imap

Interactive Mapping
Papers that mentioned: 10

Very Likely Science (75)

pypi: zenodo

Zenodo - Research. Shared.
Papers that mentioned: 10

Very Likely Science (100)

pypi: Pint

Physical quantities module
Papers that mentioned: 10

Very Likely Science (80)

pypi: read

Read files faster
Papers that mentioned: 10

Very Likely Science (65)

pypi: mbed

Arm Mbed Command Line Interface
Papers that mentioned: 10

Very Likely Science (100)

pypi: Africa

It's just a name snipe.
Papers that mentioned: 10

Very Likely Science (65)

pypi: NFSim

Neurofeedback simulation
Papers that mentioned: 10

Likely Science (50)

pypi: z

Papers that mentioned: 10

Unlikely Science (0)

cran: MNM

Multivariate Nonparametric Methods. An Approach Based on Spatial Signs and Ranks
Papers that mentioned: 10

Very Likely Science (93)

pypi: sourmash

tools for comparing biological sequences with k-mer sketches
Papers that mentioned: 10

Very Likely Science (100)

pypi: WB

A CGI program to manage 'Billboards' where documents can beposted (and edited and removed) through a simple WEB interface.
Papers that mentioned: 10

Unlikely Science (15)

pypi: surfer

surF - Fourier surrogate modeling
Papers that mentioned: 10

Very Likely Science (75)

cran: timereg

Flexible Regression Models for Survival Data
Papers that mentioned: 10

Very Likely Science (85)

pypi: sigma

Numerical methods in Python
Papers that mentioned: 10

Very Likely Science (90)

cran: treemapify

Draw Treemaps in 'ggplot2'
Papers that mentioned: 10

Very Likely Science (75)

pypi: water

Apply watermarks to images
Papers that mentioned: 10

Very Likely Science (65)

pypi: tensorflow-gpu

Removed: please install "tensorflow" instead.
Papers that mentioned: 10

Very Likely Science (80)

pypi: FUCHS

FUll circular RNA CHaracterization from RNA-Seq
Papers that mentioned: 10

Very Likely Science (100)

pypi: lightgbm

LightGBM Python Package
Papers that mentioned: 10

Very Likely Science (100)