Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: PurBayes

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/PurBayes

Bayesian Estimation of Tumor Purity and Clonality
3 versions
Latest release: over 11 years ago
0 downloads

Papers Mentioning PurBayes 10

Whole-genome sequencing of phenotypically distinct inflammatory breast cancers reveals similar genomic alterations to non-inflammatory breast cancers
Cited by: 7
Author(s): Xiaotong Li, Sushant Kumar, Arif Harmanci, Shantao Li, Robert Kitchen, Yan Zhang, Vikram B. Wali, Sangeetha M. Reddy, Wendy A. Woodward, James M. Reuben, Joel Rozowsky, Christos Hatzis, Naoto T. Ueno, Savitri Krishnamurthy, Lajos Pusztai, Mark Gerstein
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0078143

SomatiCA: Identifying, Characterizing and Quantifying Somatic Copy Number Aberrations from Cancer Genome Sequencing Data
Cited by: 28
Author(s): Mengjie Chen, Murat Günel, Hongyu Zhao
Software Mentions: 4
Published: about 11 years ago

10.1371/journal.pone.0145176

Mutational Landscapes of Sequential Prostate Metastases and Matched Patient Derived Xenografts during Enzalutamide Therapy
Cited by: 26
Author(s): Manish Kohli, Liguo Wang, Fang Xie, Hugues Sicotte, Ping Yin, Scott M. Dehm, Steven N. Hart, Peter T. Vedell, Poulami Barman, Rui Qin, Douglas W. Mahoney, Rachel E. Carlson, Jeanette E. Eckel‐Passow, Thomas D. Atwell, Patrick W. Eiken, Brendan P. McMenomy, Eric D. Wieben, Gautam Jha, Rafael E. Jimenez, Richard M. Weinshilboum, Liewei M Wang
Software Mentions: 4
Published: almost 9 years ago

10.1242/dmm.049044

Comparison of the oncogenomic landscape of canine and feline hemangiosarcoma shows novel parallels with human angiosarcoma
Cited by: 16
Author(s): Kim Wong, Latasha Ludwig, Oscar Krijgsman, David J. Adams, Geoffrey A. Wood, Louise van der Weyden
Software Mentions: 4
Published: over 3 years ago

10.1186/s13073-015-0127-5

Ploidy-Seq: inferring mutational chronology by sequencing polyploid tumor subpopulations
Cited by: 6
Author(s): Ankit Malhotra, Yong Wang, Jill Waters, Ken Chen, Funda Meric‐Bernstam, Ira M. Hall, Nicholas E. Navin
Software Mentions: 3
Published: almost 10 years ago

10.1038/s41598-018-26967-4

Molecular profiling and sequential somatic mutation shift in hypermutator tumours harbouring POLE mutations
Cited by: 24
Author(s): Keiichi Hatakeyama, Keiichi Ohshima, Takeshi Nagashima, Shumpei Ohnami, Sumiko Ohnami, Masakuni Serizawa, Yuji Shimoda, Koji Maruyama, Yasuto Akiyama, Kenichi Urakami, Masatoshi Kusuhara, Tohru Mochizuki, Ken Yamaguchi
Software Mentions: 2
Published: over 6 years ago

10.3389/fgene.2020.00458

Accurate Inference of Tumor Purity and Absolute Copy Numbers From High-Throughput Sequencing Data
Cited by: 7
Author(s): Xiguo Yuan, Zhe Li, Huijing Zhao, Jun Bai, Junying Zhang
Software Mentions: 2
Published: over 4 years ago

10.1186/s12920-017-0255-4

CLImAT-HET: detecting subclonal copy number alterations and loss of heterozygosity in heterogeneous tumor samples from whole-genome sequencing data
Cited by: 15
Author(s): Zhenhua Yu, Ao Li, Minghui Wang
Software Mentions: 2
Published: over 7 years ago

10.1186/s13073-021-00962-3

Single-cell exome sequencing reveals multiple subclones in metastatic colorectal carcinoma
Cited by: 6
Author(s): Jie Tang, Kailing Tu, Keying Lu, Jiaxun Zhang, Kai Luo, Haoxuan Jin, Lei Wang, Lie Yang, Weiran Xiao, Qilin Zhang, Xiaoling Liu, Xin yi Ge, Guibo Li, Zong‐Guang Zhou, Dan Xie
Software Mentions: 2
Published: about 3 years ago

10.1002/1878-0261.12156

Characterization of genetic intratumor heterogeneity in colorectal cancer and matching patient‐derived spheroid cultures
Cited by: 34
Author(s): Sigrid S. Árnadóttir, Maria Jeppesen, Philippe Lamy, Jesper B. Bramsen, Iver Nordentoft, Michael Knudsen, Søren Vang, Mogens Rørbæk Madsen, Ole Thastrup, Jacob Thastrup, Claus Lindbjerg Andersen
Software Mentions: 1
Published: almost 7 years ago