Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: read

https://packages.ecosyste.ms/registries/pypi.org/packages/read

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Latest release: almost 4 years ago
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Papers Mentioning read 10

ExpressionPlot: a web-based framework for analysis of RNA-Seq and microarray gene expression data
Cited by: 38
Author(s): Brad A. Friedman, Tom Maniatis
Software Mentions: 5
Published: over 13 years ago

10.1016/j.gpb.2020.06.006

mrMLM v4.0.2: An R Platform for Multi-locus Genome-wide Association Studies
Cited by: 78
Author(s): Yawen Zhang, Cox Lwaka Tamba, Yang Wen, Pei Li, Wenlong Ren, Yuanli Ni, Jun Gao, Yuanming Zhang
Software Mentions: 5
Published: over 4 years ago

10.1186/1471-2164-14-550

Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies
Cited by: 13
Author(s): Lucas Swanson, Gordon Robertson, Andrew J. Mungall, Yaron S.N. Butterfield, Readman Chiu, Richard Corbett, T. Roderick Docking, Donna E. Hogge, Shaun D. Jackman, Richard A. Moore, Ka Ming Nip, Jeremy Parker, Jenny Q. Qian, Anthony Raymond, Sandy S. Sung, Angela Tam, Nina Thiessen, Richard Varhol, Sherry Wang, Deniz Yörükoğlu, Yongjun Zhao, Pamela A. Hoodless, S. Cenk Şahinalp, Aly Karsan, İnanç Birol
Software Mentions: 5
Published: over 11 years ago

10.1098/rsfs.2019.0119

Towards blood flow in the virtual human: efficient self-coupling of HemeLB
Cited by: 9
Author(s): J. W. S. McCullough, Robin A. Richardson, Alex Patronis, René Halver, Ryan Marshall, Martin Ruefenacht, Brian J. N. Wylie, Thomas Odaker, Michael Wiedemann, Bryn Lloyd, Esra Neufeld, Godehard Sutmann, Anthony Skjellum, Dieter Kranzlmüller, Peter V. Coveney
Software Mentions: 4
Published: about 4 years ago

10.1186/s12864-015-2277-7

Combined de novo and genome guided assembly and annotation of the Pinus patula juvenile shoot transcriptome
Cited by: 42
Author(s): Erik A. Visser, Jill L. Wegrzyn, Emma T. Steenkmap, Alexander Andrew Myburg, Sanushka Naidoo
Software Mentions: 4
Published: about 9 years ago

10.1038/s41598-020-72880-0

The genomes of a monogenic fly: views of primitive sex chromosomes
Cited by: 5
Author(s): Anne A. Andere, Meaghan L. Pimsler, Aaron M. Tarone, Christine Picard
Software Mentions: 2
Published: over 4 years ago

10.3389/fncir.2021.684872

Modeling Nonlinear Dendritic Processing of Facilitation in a Dragonfly Target-Tracking Neuron
Cited by: 0
Author(s): Bo Bekkouche, Patrick A. Shoemaker, Joseph M. Fabian, Elisa Rigosi, Steven D. Wiederman, David C. O’Carroll
Software Mentions: 2
Published: over 3 years ago

10.1186/1471-2105-12-210

A novel and well-defined benchmarking method for second generation read mapping
Cited by: 73
Author(s): Manuel Holtgrewe, Anne-Katrin Emde, David Weese, Knut Reinert
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0146950

Edesign: Primer and Enhanced Internal Probe Design Tool for Quantitative PCR Experiments and Genotyping Assays
Cited by: 6
Author(s): Yoshinobu Kimura, Takehisa Soma, Naoko Kasahara, Diane Delobel, Takeshi Hanami, Yuki Tanaka, Michiel de Hoon, Yoshihide Hayashizaki, Kengo Usui, Matthias Harbers
Software Mentions: 1
Published: almost 9 years ago