Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: motifStack

https://packages.ecosyste.ms/registries/bioconductor.org/packages/motifStack

Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
1 version
Latest release: about 1 year ago
10 dependent packages
96,465 downloads total

Papers Mentioning motifStack 10

10.12688/f1000research.8923.2

TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages
Cited by: 105
Author(s): Tiago C. Silva, Antonio Colaprico, Catharina Olsen, Fulvio D’Angelo, Gianluca Bontempi, Michele Ceccarelli, Houtan Noushmehr
Software Mentions: 17
Published: about 8 years ago

10.1186/s12864-018-4559-3

ATACseqQC: a Bioconductor package for post-alignment quality assessment of ATAC-seq data
Cited by: 133
Author(s): Jianhong Ou, Haibo Li, Jun Yu, Michelle A. Kelliher, Lucio H. Castilla, Nathan D. Lawson, Lihua Julie Zhu
Software Mentions: 14
Published: almost 7 years ago

10.7554/eLife.07836

Lipid-mediated regulation of SKN-1/Nrf in response to germ cell absence
Cited by: 158
Author(s): Michael J. Steinbaugh, Sri Devi Narasimhan, Stacey Robida-Stubbs, Lorenza E Moronetti Mazzeo, Jonathan M. Dreyfuss, John M. Hourihan, Prashant Raghavan, Theresa N. Operaña, Reza Esmaillie, T. Keith Blackwell
Software Mentions: 13
Published: over 9 years ago

10.12688/f1000research.17976.2

TFutils: Data structures for transcription factor bioinformatics
Cited by: 2
Author(s): Benjamin J. Stubbs, Shweta Gopaulakrishnan, Kimberly Glass, Nathalie Pochet, Celine Everaert, Benjamin A. Raby, Vincent J. Carey
Software Mentions: 10
Published: over 5 years ago

10.1371/journal.pone.0149891

Identification and Characterization of msf, a Novel Virulence Factor in Haemophilus influenzae
Cited by: 15
Author(s): Jennifer M. Kress-Bennett, N. Luisa Hiller, Rory Eutsey, Evan Powell, Mark Longwell, Todd A. Hillman, Tenisha Blackwell, Barbara Byers, Joshua Chang Mell, J. Christopher Post, Fang Hu, Garth D. Ehrlich, Benjamin Janto
Software Mentions: 6
Published: almost 9 years ago

10.1186/s13059-017-1304-1

Abundant expression of somatic transposon-derived piRNAs throughout Tribolium castaneum embryogenesis
Cited by: 16
Author(s): Maria Ninova, Sam Griffiths-Jones, Matthew Ronshaugen
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pbio.3000164

Boosting subdominant neutralizing antibody responses with a computationally designed epitope-focused immunogen
Cited by: 24
Author(s): Fabian Sesterhenn, Marie Galloux, Sabrina S. Vollers, Lucia Csepregi, Che Yang, Delphyne Descamps, Jaume Bonet, Simon Friedensohn, Pablo Gainza, Patricia Corthésy, Man Chen, Stéphane Rosset, Marie‐Anne Rameix‐Welti, Jean-François Éléouët, Sai T. Reddy, Barney S. Graham, Sabine Riffault, Bruno E. Correia
Software Mentions: 3
Published: almost 6 years ago

10.1093/bioinformatics/btt297

viRome: an R package for the visualization and analysis of viral small RNA sequence datasets
Cited by: 40
Author(s): Michael Watson, Esther Schnettler, Alain Kohl
Software Mentions: 2
Published: over 11 years ago

10.3390/v10120694

Antiviral RNA Interference Activity in Cells of the Predatory Mosquito, Toxorhynchites amboinensis
Cited by: 7
Author(s): Claire L. Donald, Margus Varjak, Eric Roberto Guimarães Rocha Aguiar, João Trindade Marques, Vattipally B. Sreenu, Esther Schnettler, Alain Kohl
Software Mentions: 1
Published: about 6 years ago

10.3389/fimmu.2020.573413

Replacement of TCR Dβ With Immunoglobulin DH DSP2.3 Imposes a Tyrosine-Enriched TCR Repertoire and Adversely Affects T Cell Development
Cited by: 1
Author(s): Michael Levinson, Mohamed Khass, Peter D. Burrows, Harry W. Schroeder
Software Mentions: 1
Published: over 4 years ago