Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.12688/f1000research.17976.2
https://doi.org/10.12688/f1000research.17976.2
Cited by: 2
Author(s): Benjamin J. Stubbs, Shweta Gopaulakrishnan, Kimberly Glass, Nathalie Pochet, Celine Everaert, Benjamin A. Raby, Vincent J. Carey
Published: about 5 years ago
Software Mentions 10
bioconductor: Gviz
Plotting data and annotation information along genomic coordinatesPapers that mentioned: 134
bioconductor: MotifDb
An Annotated Collection of Protein-DNA Binding Sequence MotifsPapers that mentioned: 17
bioconductor: motifStack
Plot stacked logos for single or multiple DNA, RNA and amino acid sequencePapers that mentioned: 10
bioconductor: TFBSTools
Software Package for Transcription Factor Binding Site (TFBS) AnalysisPapers that mentioned: 33
cran: JASPAR
R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matricesPapers that mentioned: 1,283