Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: genometools

https://packages.ecosyste.ms/registries/pypi.org/packages/genometools

GenomeTools: A Python Toolkit for Working with Genomic Data.
16 versions
Latest release: almost 7 years ago
145 downloads last month

Papers Mentioning genometools 10

10.1186/s12870-017-1070-y

Plant-RRBS, a bisulfite and next-generation sequencing-based methylome profiling method enriching for coverage of cytosine positions
Cited by: 12
Author(s): Martin Schmidt, Michiel Van Bel, Magdalena Wołoszyńska, Bram Slabbinck, Cindy Martens, Marc De Block, Frederik Coppens, Mieke Van Lijsebettens
Software Mentions: 6
Published: over 7 years ago

10.1111/1755-0998.12939

Finding Nemo’s Genes: A chromosome‐scale reference assembly of the genome of the orange clownfish <i>Amphiprion percula</i>
Cited by: 42
Author(s): Robert Lehmann, Damien J. Lightfoot, Celia Schunter, Craig Michell, Hajime Ohyanagi, Katsuhiko Mineta, Sylvain Forêt, Michael L. Berumen, David J. Miller, Manuel Aranda, Takashi Gojobori, Philip L. Munday, Timothy Ravasi
Software Mentions: 5
Published: over 6 years ago

10.1038/s42003-020-1060-8

The genome of pest Rhynchophorus ferrugineus reveals gene families important at the plant-beetle interface
Cited by: 36
Author(s): Khaled M. Hazzouri, Naganeeswaran Sudalaimuthuasari, Biduth Kundu, David R. Nelson, Mohammad Ali Al-Deeb, Alain Le Mansour, J. Spencer Johnston, Claude Desplan, Khaled M. A. Amiri
Software Mentions: 3
Published: over 4 years ago

10.1186/s12864-018-4616-y

Genomic architecture of haddock (Melanogrammus aeglefinus) shows expansions of innate immune genes and short tandem repeats
Cited by: 36
Author(s): Ole K. Tørresen, Marine S. O. Brieuc, Monica Hongrø Solbakken, Elin Sørhus, Alexander Johan Nederbragt, Kjetill S. Jakobsen, Sonnich Meier, Rolf B. Edvardsen, Sissel Jentoft
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0101271

These Are Not the K-mers You Are Looking For: Efficient Online K-mer Counting Using a Probabilistic Data Structure
Cited by: 88
Author(s): Zhang Qingpeng, Jason Pell, Rosangela Canino-Koning, Adina Howe, C. Titus Brown
Software Mentions: 3
Published: over 10 years ago

10.1186/s12864-016-3448-x

An improved genome assembly uncovers prolific tandem repeats in Atlantic cod
Cited by: 125
Author(s): Ole K. Tørresen, Bastiaan Star, Sissel Jentoft, William Brynildsen Reinar, Harald Grove, Jason R. Miller, Brian P. Walenz, James Knight, Jenny Ekholm, Paul Peluso, Rolf B. Edvardsen, Ave Tooming‐Klunderud, Morten Skage, Sigbjørn Lien, Kjetill S. Jakobsen, Alexander J. Nederbragt
Software Mentions: 2
Published: almost 8 years ago

10.1111/pbi.13015

Variation in abundance of predicted resistance genes in the <i>Brassica oleracea</i> pangenome
Cited by: 85
Author(s): Philipp E. Bayer, Agnieszka A. Golicz, Soodeh Tirnaz, Chon‐Kit Kenneth Chan, David Edwards, Jacqueline Batley
Software Mentions: 2
Published: about 6 years ago