Ecosyste.ms: Papers

bioconductor: TDARACNE

Papers that mentioned: 11

bioconductor: compcodeR

RNAseq data simulation, differential expression analysis and performance comparison of differential expression methods
Papers that mentioned: 11

cran: log

Record Events and Issues
Papers that mentioned: 11

bioconductor: methylGSA

Gene Set Analysis Using the Outcome of Differential Methylation
Papers that mentioned: 11

cran: cplm

Compound Poisson Linear Models
Papers that mentioned: 11

bioconductor: methylSig

MethylSig: Differential Methylation Testing for WGBS and RRBS Data
Papers that mentioned: 11

pypi: EDX

EDX MADES SOAP API implementation in python
Papers that mentioned: 11

pypi: copycat

copycat - simple, transparent and non-intrusive python persistence
Papers that mentioned: 11

pypi: Disney

It's just a name snipe.
Papers that mentioned: 11

pypi: PeptideBuilder

Create peptide PDB files with specified geometry
Papers that mentioned: 11

pypi: hash

hash package
Papers that mentioned: 11

pypi: arsenal

Papers that mentioned: 11

cran: glmpath

L1 Regularization Path for Generalized Linear Models and Cox Proportional Hazards Model
Papers that mentioned: 11

pypi: f

Functional tools, collections and monads.
Papers that mentioned: 11

cran: glmmLasso

Variable Selection for Generalized Linear Mixed Models by L1-Penalized Estimation
Papers that mentioned: 11

pypi: EasyVision

Easy Computer Vision Library using OpenCV.
Papers that mentioned: 11

bioconductor: AnnotationForge

Tools for building SQLite-based annotation data packages
Papers that mentioned: 11

cran: asbio

A Collection of Statistical Tools for Biologists
Papers that mentioned: 11

cran: assignPOP

Population Assignment using Genetic, Non-Genetic or Integrated Data in a Machine Learning Framework
Papers that mentioned: 11

cran: biomartr

Genomic Data Retrieval
Papers that mentioned: 11

cran: aSPU

Adaptive Sum of Powered Score Test
Papers that mentioned: 11

pypi: Accord

A high-level Python Web framework that encourages rapid development and clean, pragmatic design.
Papers that mentioned: 11

pypi: guanaco

3D CTF correction
Papers that mentioned: 11

pypi: hcluster

A hierarchical clustering package for Scipy.
Papers that mentioned: 11

bioconductor: PureCN

Copy number calling and SNV classification using targeted short read sequencing
Papers that mentioned: 11

cran: AIPW

Augmented Inverse Probability Weighting
Papers that mentioned: 11

cran: MetABEL

Meta-analysis of genome-wide SNP association results
Papers that mentioned: 11

cran: metacom

Analysis of the 'Elements of Metacommunity Structure'
Papers that mentioned: 11

pypi: log

Papers that mentioned: 11

cran: codyn

Community Dynamics Metrics
Papers that mentioned: 11

cran: MDMR

Multivariate Distance Matrix Regression
Papers that mentioned: 11

cran: energy

E-Statistics: Multivariate Inference via the Energy of Data
Papers that mentioned: 11

cran: frailtypack

Shared, Joint (Generalized) Frailty Models; Surrogate Endpoints
Papers that mentioned: 11

pypi: clustergram

Clustergram - visualization and diagnostics for cluster analysis
Papers that mentioned: 11

pypi: classifier

Classify the files in your Downloads folder into suitable destinations.
Papers that mentioned: 11

cran: maxLik

Maximum Likelihood Estimation and Related Tools
Papers that mentioned: 11

pypi: here

Configures shells for easy python development
Papers that mentioned: 11

pypi: station

simple context manager for computational engines
Papers that mentioned: 11

pypi: Edward

A library for probabilistic modeling, inference, and criticism
Papers that mentioned: 11

pypi: ChemDataExtractor

A toolkit for extracting chemical information from the scientific literature.
Papers that mentioned: 11

cran: TRES

Tensor Regression with Envelope Structure
Papers that mentioned: 11

cran: ExpDes

Experimental Designs Package
Papers that mentioned: 11

bioconductor: COHCAP

CpG Island Analysis Pipeline for Illumina Methylation Array and Targeted BS-Seq Data
Papers that mentioned: 11

cran: permute

Functions for Generating Restricted Permutations of Data
Papers that mentioned: 11

cran: here

A Simpler Way to Find Your Files
Papers that mentioned: 11

bioconductor: SPONGE

Sparse Partial Correlations On Gene Expression
Papers that mentioned: 11

pypi: CAI

Python implementation of codon adaptation index
Papers that mentioned: 11

cran: dtwclust

Time Series Clustering Along with Optimizations for the Dynamic Time Warping Distance
Papers that mentioned: 11

cran: EHR

Electronic Health Record (EHR) Data Processing and Analysis Tool
Papers that mentioned: 11

cran: egg

Extensions for 'ggplot2': Custom Geom, Custom Themes, Plot Alignment, Labelled Panels, Symmetric Scales, and Fixed Panel Size
Papers that mentioned: 11

cran: PBSmapping

Mapping Fisheries Data and Spatial Analysis Tools
Papers that mentioned: 11

bioconductor: SamSPECTRAL

Identifies cell population in flow cytometry data
Papers that mentioned: 11

cran: pander

An R 'Pandoc' Writer
Papers that mentioned: 11

pypi: pubmed

Get literature information via PubMed ID
Papers that mentioned: 11

bioconductor: RiboProfiling

Ribosome Profiling Data Analysis: from BAM to Data Representation and Interpretation
Papers that mentioned: 11

cran: gratia

Graceful 'ggplot'-Based Graphics and Other Functions for GAMs Fitted Using 'mgcv'
Papers that mentioned: 11

pypi: BOFdat

Package to generate biomass objective function stoichiometric coefficients from experimental data
Papers that mentioned: 11

pypi: bpipe

Minimal & Simple Pipeline for Python
Papers that mentioned: 11

cran: Patterns

Deciphering Biological Networks with Patterned Heterogeneous Measurements
Papers that mentioned: 11

cran: dnet

Integrative Analysis of Omics Data in Terms of Network, Evolution and Ontology
Papers that mentioned: 11

cran: OECD

Search and Extract Data from the OECD
Papers that mentioned: 11

cran: dlm

Bayesian and Likelihood Analysis of Dynamic Linear Models
Papers that mentioned: 11

cran: cd

CD Data for Entity Resolution
Papers that mentioned: 11

cran: ade4TkGUI

'ade4' Tcl/Tk Graphical User Interface
Papers that mentioned: 11

bioconductor: Oscope

Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq
Papers that mentioned: 11

cran: PCAmixdata

Multivariate Analysis of Mixed Data
Papers that mentioned: 11

bioconductor: ExperimentHub

Client to access ExperimentHub resources
Papers that mentioned: 11

bioconductor: openCyto

Hierarchical Gating Pipeline for flow cytometry data
Papers that mentioned: 11

cran: NNS

Nonlinear Nonparametric Statistics
Papers that mentioned: 11

cran: np

Nonparametric Kernel Smoothing Methods for Mixed Data Types
Papers that mentioned: 11

bioconductor: OrderedList

Similarities of Ordered Gene Lists
Papers that mentioned: 11

cran: PoA

Finds the Price of Anarchy for Routing Games
Papers that mentioned: 11

cran: nplr

N-Parameter Logistic Regression
Papers that mentioned: 11

bioconductor: flowPeaks

An R package for flow data clustering
Papers that mentioned: 11

cran: AGHmatrix

Relationship Matrices for Diploid and Autopolyploid Species
Papers that mentioned: 11

cran: mrgsolve

Simulate from ODE-Based Models
Papers that mentioned: 11

cran: moonBook

Functions and Datasets for the Book by Keon-Woong Moon
Papers that mentioned: 11

cran: MNP

Fitting the Multinomial Probit Model
Papers that mentioned: 11

cran: MLmetrics

Machine Learning Evaluation Metrics
Papers that mentioned: 11

cran: mitml

Tools for Multiple Imputation in Multilevel Modeling
Papers that mentioned: 11

cran: censReg

Censored Regression (Tobit) Models
Papers that mentioned: 11

bioconductor: MetaNeighbor

Single cell replicability analysis
Papers that mentioned: 11

pypi: biom-format

Biological Observation Matrix (BIOM) format
Papers that mentioned: 11

pypi: Biosig

BioSig - tools for biomedical signal processing
Papers that mentioned: 11

cran: detectRUNS

Detect Runs of Homozygosity and Runs of Heterozygosity in Diploid Genomes
Papers that mentioned: 11

pypi: edlib

Lightweight, super fast library for sequence alignment using edit (Levenshtein) distance.
Papers that mentioned: 11

pypi: GPyOpt

The Bayesian Optimization Toolbox
Papers that mentioned: 11

cran: Cairo

R Graphics Device using Cairo Graphics Library for Creating High-Quality Bitmap (PNG, JPEG, TIFF), Vector (PDF, SVG, PostScript) and Display (X11 and Win32) Output
Papers that mentioned: 11

cran: geometry

Mesh Generation and Surface Tessellation
Papers that mentioned: 11

cran: carData

Companion to Applied Regression Data Sets
Papers that mentioned: 11

cran: BMS

Bayesian Model Averaging Library
Papers that mentioned: 11

pypi: bank

Core Banking for Python
Papers that mentioned: 11

bioconductor: makecdfenv

CDF Environment Maker
Papers that mentioned: 11

cran: influence.ME

Tools for Detecting Influential Data in Mixed Effects Models
Papers that mentioned: 11

cran: inbreedR

Analysing Inbreeding Based on Genetic Markers
Papers that mentioned: 11

cran: janitor

Simple Tools for Examining and Cleaning Dirty Data
Papers that mentioned: 11

bioconductor: Linnorm

Linear model and normality based normalization and transformation method (Linnorm)
Papers that mentioned: 11

cran: IMEC

Ising Model of Explanatory Coherence
Papers that mentioned: 11

cran: mdatools

Multivariate Data Analysis for Chemometrics
Papers that mentioned: 11

pypi: p4

A Python Pre-Processor for the Processing system
Papers that mentioned: 11