Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: OrderedList
https://packages.ecosyste.ms/registries/bioconductor.org/packages/OrderedList
Similarities of Ordered Gene Lists
1 version
Latest release: about 1 year ago
41,985 downloads total
Papers Mentioning OrderedList 11
10.1371/journal.pcbi.1002350
Single Sample Expression-Anchored Mechanisms Predict Survival in Head and Neck CancerCited by: 66
Author(s): Xinan Yang, Kelly Regan, Yong Huang, Qingbei Zhang, Jiànróng Lǐ, Tanguy Y. Seiwert, Ezra E.W. Cohen, H. Rosie Xing, Yves A. Lussier
Software Mentions: 6
Published: almost 13 years ago
10.1371/journal.pone.0015581
Therapeutic Implications of GIPC1 Silencing in CancerCited by: 21
Author(s): Thomas Chittenden, Jane Pak, Renee Rubio, Hai‐Ling Margaret Cheng, Kristina M. Holton, Niall Prendergast, Vladimir Glinskii, Yi Cai, Aedín C. Culhane, Stefan Bentink, Mathew Schwede, Jessica C. Mar, Eleanor Howe, Martin J. Aryee, Răzvan Sultana, Anthony A. Lanahan, Jennifer Taylor, Chris Holmes, William C. Hahn, Jean J. Zhao, J. Dirk Iglehart, John Quackenbush
Software Mentions: 6
Published: almost 14 years ago
10.1152/ajpendo.00473.2013
Brown and white adipose tissues: intrinsic differences in gene expression and response to cold exposure in miceCited by: 289
Author(s): Meritxell Rosell, Myrsini Kaforou, Andrea Frontini, Anthony Okolo, Yi‐Wah Chan, Evanthia Nikolopoulou, Steven Millership, Matthew Fenech, David A. MacIntyre, J. Turner, Jonathan D. Moore, E. K. Blackburn, William J. Gullick, Saverio Cinti, Giovanni Montana, Malcolm G. Parker, Mark Christian
Software Mentions: 5
Published: over 10 years ago
10.3389/fonc.2014.00251
Hidden Treasures in “Ancient†Microarrays: Gene-Expression Portrays Biology and Potential Resistance Pathways of Major Lung Cancer Subtypes and Normal TissueCited by: 14
Author(s): Konstantinos Kerkentzes, Vincenzo Lagani, Ioannis Tsamardinos, Mogens Vyberg, Oluf Dimitri Røe
Software Mentions: 5
Published: about 10 years ago
10.1371/journal.pone.0021495
MicroRNA Expression Profiling Reveals MiRNA Families Regulating Specific Biological Pathways in Mouse Frontal Cortex and HippocampusCited by: 70
Author(s): Juuso Juhila, Tessa Sipilä, Katherine Icay, Daniel Nicorici, Pekka Ellonen, Aleksi Kallio, Eija Korpelainen, Dario Greco, Iiris Hovatta
Software Mentions: 4
Published: over 13 years ago
10.1186/s12864-021-07900-y
LncGSEA: a versatile tool to infer lncRNA associated pathways from large-scale cancer transcriptome sequencing dataCited by: 2
Author(s): Yanan Ren, Ting You Wang, Leah C. Anderton, Qi Cao, Rendong Yang
Software Mentions: 3
Published: over 3 years ago
10.7717/peerj.10576
A novel similarity score based on gene ranks to reveal genetic relationships among diseasesCited by: 3
Author(s): Dongmei Luo, Chengdong Zhang, Liwan Fu, Yuening Zhang, Yue‐Qing Hu
Software Mentions: 3
Published: almost 4 years ago
10.1523/ENEURO.0313-19.2020
Registered Report: Transcriptional Analysis of Savings Memory Suggests Forgetting is Due to Retrieval FailureCited by: 0
Author(s): Tania Rosiles, Melissa Nguyen, Monica Duron, Annette Garcia, George Garcia, Hannah Gordon, Lorena Juarez, Irina Calin‐Jageman, Robert Calin-Jageman
Software Mentions: 2
Published: about 4 years ago
10.1186/1755-8794-8-S2-S6
Identification of epigenetic modifications that contribute to pathogenesis in therapy-related AML: Effective integration of genome-wide histone modification with transcriptional profilesCited by: 3
Author(s): Xinan Yang, Bin Wang, John M. Cunningham
Software Mentions: 1
Published: over 9 years ago
10.7554/eLife.65150
Resistance to different anthracycline chemotherapeutics elicits distinct and actionable primary metabolic dependencies in breast cancerCited by: 19
Author(s): Shawn McGuirk, Yannick Audet-Delage, Matthew G. Annis, Yibo Xue, Mathieu Vernier, Kaiqiong Zhao, Catherine St‐Louis, Lucía Minarrieta, David A. Patten, Geneviève Morin, Celia Greenwood, Vincent Giguère, Sidong Huang, Peter M. Siegel, Julie St‐Pierre
Software Mentions: 1
Published: over 3 years ago
10.1186/s12920-020-00784-z
Comparative transcriptome analysis of human skeletal muscle in response to cold acclimation and exercise training in human volunteersCited by: 6
Author(s): Emmani B. M. Nascimento, Roland W. J. Hangelbroek, Guido Hooiveld, Joris Hoeks, Wouter D. van Marken Lichtenbelt, Martine Hesselink, Patrick Schrauwen, Sander Kersten
Software Mentions: 1
Published: about 4 years ago