Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: protr

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/protr

Generating Various Numerical Representation Schemes for Protein Sequences
22 versions
Latest release: 11 months ago
2 dependent packages
575 downloads last month

Papers Mentioning protr 11

BioTriangle: a web-accessible platform for generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions
Cited by: 36
Author(s): Jie Dong, Zhi‐Jiang Yao, Ming Wen, Min Zhu, Ningning Wang, Hongyu Miao, Aiping Lu, Wenbin Zeng, Dong‐Sheng Cao
Software Mentions: 6
Published: about 8 years ago

10.1038/s41598-019-50119-x

Tissue-specific mouse mRNA isoform networks
Cited by: 12
Author(s): Gaurav Kandoi, Julie A. Dickerson
Software Mentions: 6
Published: almost 5 years ago

10.3390/ijms20122950

TargetAntiAngio: A Sequence-Based Tool for the Prediction and Analysis of Anti-Angiogenic Peptides
Cited by: 36
Author(s): Vishuda Laengsri, Chanin Nantasenamat, Nalini Schaduangrat, Pornlada Nuchnoi, Virapong Prachayasittikul, Watshara Shoombuatong
Software Mentions: 4
Published: over 5 years ago

10.3390/molecules24101973

ACPred: A Computational Tool for the Prediction and Analysis of Anticancer Peptides
Cited by: 109
Author(s): Nalini Schaduangrat, Chanin Nantasenamat, Virapong Prachayasittikul, Watshara Shoombuatong
Software Mentions: 4
Published: over 5 years ago

10.1186/s12859-019-3317-0

Identification of infectious disease-associated host genes using machine learning techniques
Cited by: 24
Author(s): Ranjan Kumar Barman, Anirban Mukhopadhyay, Ujjwal Maulik, Sayan Das
Software Mentions: 3
Published: almost 5 years ago

10.3390/life11080866

Identification of Targeted Proteins by Jamu Formulas for Different Efficacies Using Machine Learning Approach
Cited by: 2
Author(s): Sony Hartono Wijaya, Farit Mochamad Afendi, Irmanida Batubara, Ming Huang, Naoaki Ono, Shigehiko Kanaya, Md. Altaf-Ul-Amin
Software Mentions: 3
Published: about 3 years ago

10.1093/database/baab011

Development of a biomarker database toward performing disease classification and finding disease interrelations
Cited by: 2
Author(s): Shaikh Farhad Hossain, Ming Huang, Naoaki Ono, Aki Morita, Shigehiko Kanaya, Md. Altaf-Ul-Amin
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-020-60733-9

Deep Evolutionary History of the Phox and Bem1 (PB1) Domain Across Eukaryotes
Cited by: 13
Author(s): Sumanth K. Mutte, Dolf Weijers
Software Mentions: 3
Published: over 4 years ago

10.1186/s13040-019-0196-x

Encodings and models for antimicrobial peptide classification for multi-resistant pathogens
Cited by: 64
Author(s): Sebastian Spänig, Dominik Heider
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms20225743

Meta-iAVP: A Sequence-Based Meta-Predictor for Improving the Prediction of Antiviral Peptides Using Effective Feature Representation
Cited by: 69
Author(s): Nalini Schaduangrat, Chanin Nantasenamat, Virapong Prachayasittikul, Watshara Shoombuatong
Software Mentions: 2
Published: almost 5 years ago

10.3390/ijms17071023

Roles of d-Amino Acids on the Bioactivity of Host Defense Peptides
Cited by: 52
Author(s): Hao Li, Nuttapat Anuwongcharoen, Aijaz Ahmad Malik, Virapong Prachayasittikul, Jarl E. S. Wikberg, Chanin Nantasenamat
Software Mentions: 1
Published: about 8 years ago