Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: biomartr
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/biomartr
Genomic Data Retrieval
20 versions
Latest release: about 1 year ago
3 dependent packages
3,182 downloads last month
Papers Mentioning biomartr 11
10.1186/s12859-021-04254-w
ORFik: a comprehensive R toolkit for the analysis of translationCited by: 13
Author(s): Håkon Tjeldnes, Kornel Labun, Yamila Torres Cleuren, Katarzyna Chyżyńska, Michał Świrski, Eivind Valen
Software Mentions: 10
Published: over 3 years ago
10.1038/s41598-021-93570-5
Three dimensional modeling of biologically relevant fluid shear stress in human renal tubule cells mimics in vivo transcriptional profilesCited by: 18
Author(s): Emily J. Ross, Emily R. Gordon, Hanna Sothers, Roshan Darji, Oakley Baron, Dustin W. Haithcock, Balabhaskar Prabhakarpandian, Kapil Pant, R Myers, Sara J. Cooper, Nancy J. Cox
Software Mentions: 8
Published: over 3 years ago
10.1038/s41598-020-73391-8
Biogeographic parallels in thermal tolerance and gene expression variation under temperature stress in a widespread bumble beeCited by: 36
Author(s): Meaghan L. Pimsler, Kennan Oyen, James D. Herndon, Jason M. Jackson, James P. Strange, Michael E. Dillon, Jeffrey D. Lozier
Software Mentions: 7
Published: about 4 years ago
10.3389/fpls.2021.684192
Agrobacterium VirE2 Protein Modulates Plant Gene Expression and Mediates Transformation From Its Location Outside the NucleusCited by: 7
Author(s): Rachelle A. Lapham, Lan‐Ying Lee, Eder Xhako, Esteban Gañán Gómez, V. M. Nivya, Stanton B. Gelvin
Software Mentions: 7
Published: over 3 years ago
10.1093/bioinformatics/bty088
SecretSanta: flexible pipelines for functional secretome predictionCited by: 10
Author(s): Anna Gogleva, Hajk-Georg Drost, Sebastián Schornack
Software Mentions: 7
Published: over 6 years ago
10.1186/s12859-019-2684-x
From trash to treasure: detecting unexpected contamination in unmapped NGS dataCited by: 42
Author(s): Mara Sangiovanni, Ilaria Granata, Amarinder Singh Thind, Mario Rosario Guarracino
Software Mentions: 7
Published: over 5 years ago
10.7717/peerj.8192
TEffectR: an R package for studying the potential effects of transposable elements on gene expression with linear regression modelCited by: 21
Author(s): Gökhan Karakülah, Nazmiye Arslan, Cihangir Yandım, Aslı Süner
Software Mentions: 6
Published: almost 5 years ago
10.3390/plants10091870
The Arabinogalactan Protein Family of Centaurium erythraea RafnCited by: 3
Author(s): Danijela M. Paunović, Katarina Ćuković, Milica Bogdanović, Slaðana Todorović, Milana Trifunović‐Momčilov, Angelina Subotić, Ana Simonović, Milan Dragićević
Software Mentions: 5
Published: about 3 years ago
10.1093/molbev/msy198
Phylotranscriptomic Insights into the Diversification of Endothermic<i>Thunnus</i>TunasCited by: 13
Author(s): Adam Ciezarek, Owen G. Osborne, Oliver N. Shipley, Edward J. Brooks, S Tracey, Jaime D. McAllister, Luke D. Gardner, Michael J.E. Sternberg, Barbara A. Block, Vincent Savolainen
Software Mentions: 5
Published: about 6 years ago
10.1371/journal.pgen.1008370
Environmental and epigenetic regulation of Rider retrotransposons in tomatoCited by: 49
Author(s): Matthias Benoit, Hajk-Georg Drost, Marco Catoni, Quentin Gouil, Sara López-Gomollón, David C. Baulcombe, Jerzy Paszkowski
Software Mentions: 3
Published: about 5 years ago
10.1186/s12864-020-07301-7
RNA sequencing identifies transcriptional changes in the rabbit larynx in response to low humidity challengeCited by: 8
Author(s): Taylor W Bailey, Andrea Pires dos Santos, Naíla Cannes do Nascimento, Shaojun Xie, Jyothi Thimmapuram, M. Preeti Sivasankar, Abigail Cox
Software Mentions: 2
Published: almost 4 years ago