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Papers: 10.1186/s12859-021-04254-w

https://doi.org/10.1186/s12859-021-04254-w

ORFik: a comprehensive R toolkit for the analysis of translation

Cited by: 13
Author(s): Håkon Tjeldnes, Kornel Labun, Yamila Torres Cleuren, Katarzyna Chyżyńska, Michał Świrski, Eivind Valen
Published: about 4 years ago

Software Mentions 10

bioconductor: anota2seq
Generally applicable transcriptome-wide analysis of translational efficiency using anota2seq
Papers that mentioned: 8
Very Likely Science (100)
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
Very Likely Science (100)
bioconductor: GenomicFeatures
Conveniently import and query gene models
Papers that mentioned: 141
Very Likely Science (90)
bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
Very Likely Science (90)
bioconductor: ORFik
Open Reading Frames in Genomics
Papers that mentioned: 2
Very Likely Science (100)
cran: biomartr
Genomic Data Retrieval
Papers that mentioned: 11
Very Likely Science (100)
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
Very Likely Science (100)
pypi: Facebook
Papers that mentioned: 3,274
Unlikely Science (0)
pypi: ggplot
ggplot for python
Papers that mentioned: 796
Very Likely Science (100)
pypi: zstd
ZSTD Bindings for Python
Papers that mentioned: 3
Very Likely Science (65)