Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: anota2seq
https://packages.ecosyste.ms/registries/bioconductor.org/packages/anota2seq
Generally applicable transcriptome-wide analysis of translational efficiency using anota2seq
1 version
Latest release: about 1 year ago
8,908 downloads total
Papers Mentioning anota2seq 8
10.1186/s12859-021-04254-w
ORFik: a comprehensive R toolkit for the analysis of translationCited by: 13
Author(s): Håkon Tjeldnes, Kornel Labun, Yamila Torres Cleuren, Katarzyna Chyżyńska, Michał Świrski, Eivind Valen
Software Mentions: 10
Published: over 3 years ago
10.1186/s12864-018-5166-z
RIVET: comprehensive graphic user interface for analysis and exploration of genome-wide translatomics dataCited by: 17
Author(s): Amanda Ernlund, Robert J. Schneider, Kelly V. Ruggles
Software Mentions: 9
Published: about 6 years ago
10.3390/ijms20092177
Polysome Profiling of a Human Glioblastoma Reveals Intratumoral HeterogeneityCited by: 9
Author(s): Fernanda C. S. Lupinacci, Hellen Kuasne, Martín Roffé, Julia Avian Vassalakis, Fernanda Ferreira da Silva, Tiago G. Santos, Victor Piana de Andrade, Paulo Sanematsu, Vilma R. Martins, Sílvia Regina Rogatto, Glaucia Noeli Maroso Hajj
Software Mentions: 4
Published: over 5 years ago
10.15252/msb.20209760
HMGB1 coordinates SASP‐related chromatin folding and RNA homeostasis on the path to senescenceCited by: 27
Author(s): Konstantinos Sofiadis, Nataša Josipović, Miloš Nikolić, Yulia Kargapolova, Nadine Übelmesser, Vassiliki Varamogianni-Mamatsi, Anne Zirkel, Ioanna Papadionysiou, Gary Loughran, James Keane, Audrey M. Michel, Eduardo Gade Gusmao, Christian Becker, Janine Altmüller, Theodore Georgomanolis, Athanasia Mizi, Argyris Papantonis
Software Mentions: 3
Published: over 3 years ago
10.1016/j.celrep.2020.108154
Protein Stability Buffers the Cost of Translation Attenuation following eIF2α PhosphorylationCited by: 15
Author(s): Kim Schneider, Geoffrey M. Nelson, J. P. Watson, Jörg Morf, Maximillian M. Dalglish, Laura M. Luh, Annika Weber, Anne Bertolotti
Software Mentions: 3
Published: about 4 years ago
10.1186/s13229-020-00384-9
Ribosome profiling in mouse hippocampus: plasticity-induced regulation and bidirectional control by TSC2 and FMRPCited by: 10
Author(s): Annie Hien, Gemma Molinaro, Botao Liu, Kimberly M. Huber, Joel D. Richter
Software Mentions: 3
Published: about 4 years ago
10.1371/journal.pbio.3000535
Enhanced translation expands the endo-lysosome size and promotes antigen presentation during phagocyte activationCited by: 42
Author(s): Victoria E. B. Hipolito, Jacqueline A. Diaz, Kristofferson Tandoc, Christian Oertlin, Johannes Ristau, Neha Chauhan, Amra Sarić, Shannon McLaughlan, Ola Larsson, Ivan Topisirović, Roberto J. Botelho
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.ppat.1008291
Translational profiling of macrophages infected with Leishmania donovani identifies mTOR- and eIF4A-sensitive immune-related transcriptsCited by: 21
Author(s): Visnú Chaparro, Louis‐Philippe Leroux, Laia Masvidal, Julie Lorent, Tyson E. Graber, Aude Zimmermann, Guillermo Arango Duque, Albert Descoteaux, Tommy Alain, Ola Larsson, Maritza Jaramillo
Software Mentions: 1
Published: over 4 years ago