Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: dnet

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/dnet

Integrative Analysis of Omics Data in Terms of Network, Evolution and Ontology
19 versions
Latest release: over 4 years ago
1 dependent package
605 downloads last month

Papers Mentioning dnet 11

TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages
Cited by: 105
Author(s): Tiago C. Silva, Antonio Colaprico, Catharina Olsen, Fulvio D’Angelo, Gianluca Bontempi, Michele Ceccarelli, Houtan Noushmehr
Software Mentions: 17
Published: over 7 years ago

10.1186/s13068-019-1584-7

A transcriptional response of Clostridium beijerinckii NRRL B-598 to a butanol shock
Cited by: 14
Author(s): Karel Sedlář, Jan Kolek, Markus Gruber, Katerina Jureckova, Barbora Branská, Gergely Csaba, Maryna Vasylkivska, Ralf Zimmer, Petra Patáková, Ivo Provazník
Software Mentions: 13
Published: over 4 years ago

10.1186/s13073-016-0384-y

XGR software for enhanced interpretation of genomic summary data, illustrated by application to immunological traits
Cited by: 131
Author(s): Hai Fang, Bogdan Knezevic, Katie L Burnham, Julian C. Knight
Software Mentions: 12
Published: over 7 years ago

10.1371/journal.pcbi.1003929

dcGOR: An R Package for Analysing Ontologies and Protein Domain Annotations
Cited by: 18
Author(s): Hai Fang
Software Mentions: 11
Published: over 9 years ago

10.1186/s12859-019-3016-x

NPA: an R package for computing network perturbation amplitudes using gene expression data and two-layer networks
Cited by: 6
Author(s): Florian Martin, Sylvain Gubian, Marja Talikka, Julia Hoeng, Manuel C. Peitsch
Software Mentions: 7
Published: over 4 years ago

10.3389/fimmu.2021.687291

Genetic Prioritization, Therapeutic Repositioning and Cross-Disease Comparisons Reveal Inflammatory Targets Tractable for Kidney Stone Disease
Cited by: 5
Author(s): Hai Fang, Lulu Jiang
Software Mentions: 7
Published: almost 3 years ago

10.1038/srep35671

RNA sequencing analysis of human podocytes reveals glucocorticoid regulated gene networks targeting non-immune pathways
Cited by: 22
Author(s): Lulu Jiang, Charles Hindmarch, Mark F. Rogers, Colin Campbell, Christy Waterfall, Jane A. Coghill, Peter W. Mathieson, Gavin I. Welsh
Software Mentions: 6
Published: over 7 years ago

10.3389/fimmu.2021.640837

Transcriptomic Analysis of Inflammatory Cardiomyopathy Identifies Molecular Signatures of Disease and Informs in silico Prediction of a Network-Based Rationale for Therapy
Cited by: 1
Author(s): Khushboo Singh, Hai Fang, Graham Davies, Benjamin Wright, Helen Lockstone, Richard O. Williams, Daniela Čiháková, Julian C. Knight, Shoumo Bhattacharya
Software Mentions: 5
Published: about 3 years ago

10.1186/s13073-014-0064-8

The `dnet’ approach promotes emerging research on cancer patient survival
Cited by: 41
Author(s): Hai Fang, Julian Gough
Software Mentions: 5
Published: almost 10 years ago

10.1155/2021/1808361

Identification of Pulpitis-Related Potential Biomarkers Using Bioinformatics Approach
Cited by: 4
Author(s): Bingchang Xin, Yuxiang Lin, He Tian, Jia Song, Liwei Zhang, Jian Lv
Software Mentions: 3
Published: over 2 years ago

10.1186/1471-2105-12-195

Mapping the distribution of packing topologies within protein interiors shows predominant preference for specific packing motifs
Cited by: 25
Author(s): Sankar Basu, Dhananjay Bhattacharyya, Rahul Banerjee
Software Mentions: 2
Published: about 13 years ago