Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-019-3016-x

https://doi.org/10.1186/s12859-019-3016-x

NPA: an R package for computing network perturbation amplitudes using gene expression data and two-layer networks

Cited by: 6
Author(s): Florian Martin, Sylvain Gubian, Marja Talikka, Julia Hoeng, Manuel C. Peitsch
Published: about 5 years ago

Software Mentions 7

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
cran: dnet
Integrative Analysis of Omics Data in Terms of Network, Evolution and Ontology
Papers that mentioned: 11
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
cran: R6
Encapsulated Classes with Reference Semantics
Papers that mentioned: 8
pypi: dnet
low-level networking library
Papers that mentioned: 11
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555