10.1002/ece3.6221

Effects of captivity, diet, and relocation on the gut bacterial communities of white‐footed mice
Cited by: 18
Author(s): Pauline van Leeuwen, Nadia Mykytczuk, Gabriela F. Mastromonaco, Albrecht I. Schulte‐Hostedde
Software Mentions: 9
Published: over 6 years ago

10.1002/ece3.7437

Mixing tree species associated with arbuscular or ectotrophic mycorrhizae reveals dual mycorrhization and interactive effects on the fungal partners
Cited by: 14
Author(s): Heike Heklau, Nicole Schindler, François Buscot, Nico Eisenhauer, Olga Ferlian, Luis Daniel Prada-Salcedo, Helge Bruelheide
Software Mentions: 9
Published: over 5 years ago

10.3897/mycokeys.81.66249

Soil fungal communities of ectomycorrhizal dominated woodlands across West Africa
Cited by: 6
Author(s): Peter Meidl, Brendan Furneaux, Kassim I. Tchan, Kerri L. Kluting, Martin Ryberg, Marie-Laure Guissou, Bakary Soro, Aïssata Traoré, Gbamon Konomou, Nourou S. Yorou, Anna Rosling
Software Mentions: 9
Published: about 5 years ago

10.1038/s41598-020-59068-2

Tritrophic interactions follow phylogenetic escalation and climatic adaptation
Cited by: 5
Author(s): Alan Kergunteuil, Lauréline Humair, Anne-Laure Maire, María Fernanda Moreno‐Aguilar, Adrienne L. Godschalx, Pilar Catalán, Sergio Rasmann
Software Mentions: 9
Published: over 6 years ago

10.3389/fpls.2019.00910

Characterization of the Wood Mycobiome of Vitis vinifera in a Vineyard Affected by Esca. Spatial Distribution of Fungal Communities and Their Putative Relation With Leaf Symptoms
Cited by: 57
Author(s): Giovanni Del Frari, Alex Gobbi, Marie Rønne Aggerbeck, Helena Oliveira, Lars Hestbjerg Hansen, Ricardo B. Ferreira
Software Mentions: 9
Published: about 7 years ago

10.1128/mSystems.00493-20

Exometabolite Dynamics over Stationary Phase Reveal Strain-Specific Responses
Cited by: 3
Author(s): John L. Chodkowski, Ashley Shade
Software Mentions: 9
Published: over 5 years ago

10.1371/journal.pone.0209402

Assessing the potential for competition between Pacific Halibut (Hippoglossus stenolepis) and Arrowtooth Flounder (Atheresthes stomias) in the Gulf of Alaska
Cited by: 6
Author(s): Cheryl L. Barnes, Anne H. Beaudreau, Mary E. Hunsicker, Lorenzo Ciannelli
Software Mentions: 9
Published: over 7 years ago

10.1038/s41598-017-18927-1

Species Distribution Modelling: Contrasting presence-only models with plot abundance data
Cited by: 107
Author(s): Vitor Hugo Freitas Gomes, Stéphanie D. IJff, Niels Raes, Iêda Leão do Amaral, Rafael de Paiva Salomão, Luiz de Souza Coêlho, Francisca Dionízia de Almeida Matos, Carolina V. Castilho, Diógenes de Andrade Lima Filho, Dairon Cárdenas López, Juan Ernesto Guevara, William E. Magnusson, Oliver L. Phillips, Florian Wittmann, Marcelo de Jesus Veiga Carim, Maria Pires Martins, Mariana Victória Irume, Daniel Sabatier, Jean‐François Molino, Olaf Bánki, José Renan da Silva Guimarães, Nigel C. A. Pitman, Maria Teresa Fernandez Piedade, Abel Monteagudo Mendoza, Bruno Garcia Luize, Eduardo Martins Venticinque, Evlyn Márcia Moraes de Leão Novo, Percy Núñez Vargas, Thiago Sanna Freire Silva, Ângelo Gilberto Manzatto, John Terborgh, Neidiane Farias Costa Reis, Juan Carlos Montero, Katia Regina Casula, Beatriz Schwantes Marimon, Ben‐Hur Marimon, Eurídice N. Honorio Coronado, Ted R. Feldpausch, Álvaro Duque, Charles E. Zartman, Nicolás Castaño Arboleda, Timothy J. Killeen, Bonifacio Mostacedo, Rodolfo Vásquez, Jochen Schöngart, Rafael Leandro de Assis, Marcelo Brilhante de Medeiros, Marcelo F. Simon, Ana Andrade, William F. Laurance, José Luís Camargo, Layon Oreste Demarchi, Susan G. Laurance, Emanuelle de Sousa Farias, Henrique E. M. Nascimento, Juan David Cardenas Revilla, Adriano Costa Quaresma, Flávia R. C. Costa, Ima Célia Guimarães Vieira, Bruno Barçante Ladvocat Cintra, Hernán Castellanos, Roel Brienen, Pablo R. Stevenson, Yuri Oliveira Feitosa, Joost F. Duivenvoorden, Gerardo A. Aymard C., Hugo F. Mogollón, Natália Targhetta, J. A. Comiskey, Alberto Vicentini, Aline Lopes, Gabriel Damasco, Nállarett Dávila, Roosevelt García‐Villacorta, Carolina Levis, Juliana Schietti, Priscila Souza, Thaíse Emilio, Alfonso Alonso, David Neill, Francisco Dallmeier, Leandro Valle Ferreira, Alejandro Araujo‐Murakami, Daniel Praia, Dário Dantas do Amaral, Fernanda Antunes Carvalho, Fernanda Coelho de Souza, Kenneth J. Feeley, Luzmila Arroyo, Marcelo Petratti Pansonato, Rogério Gribel, Boris Villa, Juan Carlos Licona, Paul V. A. Fine, Carlos Cerón, Christopher Baraloto, Eliana M. Jimenez, Juliana Stropp, Julien Engel, Marcos Silveira, M. C. Peñuela, Pascal Pétronelli, P.J.M. Maas, Raquel Thomas-Caesar, Terry W. Henkel, Doug Daly, Marcos Ríos Paredes, Tim R. Baker, Alfredo Fuentes, Carlos A. Peres, Jérôme Chave, Jose Luis Marcelo‐Peña, Kyle G. Dexter, Miles R. Silman, Peter M. Jørgensen, R. Toby Pennington, Anthony Di Fiore, Fernando Cornejo Valverde, Juan Fernando Phillips, Gonzalo Rivas‐Torres, Patricio von Hildebrand, Tinde van Andel, Ademir Roberto Ruschel, Adriana Prieto, Agustín Rudas, Bruce Hoffman, César I. A. Vela, Edelcílio Marques Barbosa, Egleé L. Zent, George Pepe Gallardo Gonzales, Hilda Paulette Dávila Doza, Íres Paula de Andrade Miranda, Jean-Louis Guillaumet, Linder Felipe Mozombite Pinto, Luiz Carlos de Matos Bonates, Natalino Silva, Ricardo Zárate Gómez, Stanford Zent, Therany Gonzales, Vincent Vos, Yadvinder Malhi, Alexandre Adalardo de Oliveira, Ángela Cano, Bianca Weiss Albuquerque, Corine Vriesendorp, Diego F. Correa, Emilio Vilanova Torre, Gregory van der Heijden, Hirma Ramírez‐Angulo, José Ferreira Ramos, Kenneth R. Young, Maíra da Rocha, Marcelo Trindade Nascimento, María Natalia Umaña Medina, Milton Tirado, Ophelia Wang, Rodrigo Sierra, Armando Torres‐Lezama, Casimiro Mendoza, Cid Ferreira, Cláudia Baider, Daniel Villarroel, Henrik Balslev, Italo Mesones, Ligia Estela Urrego Giraldo, Luisa Fernanda Casas, Manuel Augusto Ahuite Reategui, Reynaldo Linares-Palomino, Roderick Zagt, Sasha Cárdenas, William Farfán-Ríos, Adeilza Felipe Sampaio, Daniela Pauletto, Elvis H. Valderrama Sandoval, Freddy Ramírez Arévalo, Isau Huamantupa‐Chuquimaco, Karina García-Cabrera, Lionel Hernández, Luis Valenzuela Gamarra, Miguel Alexiades, Susamar Pansini, Walter Palacios Cuenca, William Milliken, Joana Ricardo, Gabriela Lopez‐Gonzalez, Edwin Pos, Hans ter Steege
Software Mentions: 9
Published: over 8 years ago

10.3390/pathogens9080628

Comparative Analysis of the Bacterial and Fungal Communities in the Gut and the Crop of Aedes albopictus Mosquitoes: A Preliminary Study
Cited by: 10
Author(s): Morgane Guégan, Edwige Martin, Claire Valiente Moro
Software Mentions: 9
Published: about 6 years ago

10.1038/s41396-019-0416-x

Variability in snake skin microbial assemblages across spatial scales and disease states
Cited by: 19
Author(s): Donald M. Walker, Jacob E. Leys, Matthew Grisnik, Alejandro Grajal-Puche, Christopher M. Murray, Matthew C. Allender
Software Mentions: 9
Published: over 7 years ago

10.3389/fmicb.2018.01323

Exposure to Arsenic Alters the Microbiome of Larval Zebrafish
Cited by: 37
Author(s): Dylan Dahan, Brooke A. Jude, Regina Lamendella, Felicia Keesing, Gabriel G. Perron
Software Mentions: 9
Published: about 8 years ago

10.1038/s41396-019-0546-1

Spatial and temporal axes impact ecology of the gut microbiome in juvenile European lobster (Homarus gammarus)
Cited by: 29
Author(s): Corey C. Holt, Mark van der Giezen, Carly L. Daniels, Grant D. Stentiford, David Bass
Software Mentions: 9
Published: almost 7 years ago

10.1128/mSystems.00897-19

Comparative Analysis of Root Microbiomes of Rice Cultivars with High and Low Methane Emissions Reveals Differences in Abundance of Methanogenic Archaea and Putative Upstream Fermenters
Cited by: 26
Author(s): Zachary Liechty, Christian Santos‐Medellín, Joseph Edwards, Bao‐Anh Thi Nguyen, David Mikhail, Shane Eason, Gregory C. Phillips, Venkatesan Sundaresan
Software Mentions: 9
Published: over 6 years ago

10.7717/peerj.5055

A novel approach to study the morphology and chemistry of pollen in a phylogenetic context, applied to the halophytic taxon <i>Nitraria</i> L.(Nitrariaceae)
Cited by: 19
Author(s): Amber Woutersen, Phillip E. Jardine, Raúl Giovanni Bogotá-Ángel, Hongxiang Zhang, Daniele Silvestro, Alexandre Antonelli, Elena Gogna, Roy Erkens, William D. Gosling, Guillaume Dupont‐Nivet, Carina Hoorn
Software Mentions: 9
Published: about 8 years ago

10.1128/mSystems.00815-20

Traditional Human Populations and Nonhuman Primates Show Parallel Gut Microbiome Adaptations to Analogous Ecological Conditions
Cited by: 11
Author(s): Ashok Sharma, Klára J. Petrželková, Barbora Pafčo, Carolyn A. Jost Robinson, Terence Fuh, Brenda A. Wilson, Rebecca M. Stumpf, Manolito Torralba, Ran Blekhman, Bryan A. White, Karen E. Nelson, Steven R. Leigh, Andrés Gómez
Software Mentions: 9
Published: over 5 years ago

10.1038/s41598-020-62186-6

Site-specific molecular analysis of the bacteriota on worn spectacles
Cited by: 4
Author(s): Birgit Fritz, Melanie März, Severin Weis, Siegfried Wahl, Focke Ziemssen, Markus Egert
Software Mentions: 9
Published: over 6 years ago

10.1002/ece3.5927

Islands in the desert for cavity‐nesting bees and wasps: Ecology, patterns of diversity, and conservation at oases of Baja California Peninsula
Cited by: 4
Author(s): Armando Falcón‐Brindis, María Luisa Jiménez, Ricardo Rodríguez‐Estrella
Software Mentions: 9
Published: over 6 years ago

10.1186/s40168-021-01089-8

Remodeling of the maternal gut microbiome during pregnancy is shaped by parity
Cited by: 28
Author(s): Alexander S. F. Berry, Meghann K. Pierdon, Ana M. Misic, Megan C. Sullivan, Kevin T. O’Brien, Ying Chen, Samuel Murray, Lydia A. Ramharack, Robert N. Baldassano, Thomas D. Parsons, Daniel P. Beiting
Software Mentions: 9
Published: about 5 years ago

10.1128/mSystems.00298-20

Coupling Bacterial Community Assembly to Microbial Metabolism across Soil Profiles
Cited by: 72
Author(s): Lu Luan, Chao Liang, Lijun Chen, Haotian Wang, Qinsong Xu, Yuji Jiang, Bo Sun
Software Mentions: 9
Published: about 6 years ago

10.1371/journal.pone.0215310

Local and regional drivers of ant communities in forest-grassland ecotones in South Brazil: A taxonomic and phylogenetic approach
Cited by: 16
Author(s): William Dröse, Luciana Regina Podgaiski, Camila Fagundes Dias, Milton de Souza Mendonça
Software Mentions: 9
Published: over 7 years ago

10.3389/fmicb.2021.728479

Cross-Sectional Study on the Gut Microbiome of Parkinson’s Disease Patients in Central China
Cited by: 11
Author(s): Liangwei Mao, Yu Zhang, Jing Tian, Ming Sang, Guimin Zhang, Yiming Zhou, Puqing Wang
Software Mentions: 8
Published: almost 5 years ago

10.1002/ece3.5289

Disturbance history mediates climate change effects on subtropical forest biomass and dynamics
Cited by: 16
Author(s): Alexandre F. Souza, Solon Jonas Longhi
Software Mentions: 8
Published: over 7 years ago

10.3389/fimmu.2018.00462

Analyzing Immunoglobulin Repertoires
Cited by: 77
Author(s): Neha Chaudhary, Duane R. Wesemann
Software Mentions: 8
Published: over 8 years ago

10.1038/s41396-018-0279-6

Bacterial contributions to delignification and lignocellulose degradation in forest soils with metagenomic and quantitative stable isotope probing
Cited by: 228
Author(s): Roland C. Wilhelm, Rahul Singh, Lindsay D. Eltis, William W. Mohn
Software Mentions: 8
Published: almost 8 years ago

10.1038/s41396-020-0622-6

Comparative genome-centric analysis reveals seasonal variation in the function of coral reef microbiomes
Cited by: 35
Author(s): Bettina Glasl, Steven J. Robbins, Pedro R. Frade, Emma Marangon, Patrick W. Laffy, David G. Bourne, Nicole S. Webster
Software Mentions: 8
Published: over 6 years ago

10.3389/fpls.2018.00387

Functional and Taxonomic Differentiation of Macrophyte Assemblages Across the Yangtze River Floodplain Under Human Impacts
Cited by: 22
Author(s): Min Zhang, Jorge García Molinos, Xiaolin Zhang, Jun Xu
Software Mentions: 8
Published: over 8 years ago

10.3389/fmicb.2020.01987

Development and Analysis of a Stable, Reduced Complexity Model Soil Microbiome
Cited by: 15
Author(s): Ryan McClure, Dan Naylor, Yuliya Farris, Michelle Davison, Sarah Fansler, Kirsten Hofmockel, Janet K. Jansson
Software Mentions: 8
Published: about 6 years ago

10.1371/journal.pone.0234498

Landscape composition and local floral resources influence foraging behavior but not the size of Bombus impatiens Cresson (Hymenoptera: Apidae) workers
Cited by: 9
Author(s): Amélie Gervais, Ève Courtois, Valérie Fournier, Marc Bélisle
Software Mentions: 8
Published: about 6 years ago

10.1038/s41598-020-59524-z

Cryptic species in the parasitic Amoebophrya species complex revealed by a polyphasic approach
Cited by: 16
Author(s): Ruibo Cai, Ehsan Kayal, Catharina Alves‐de‐Souza, Estelle Bigeard, Erwan Corre, Christian Jeanthon, Dominique Marie, Betina M. Porcel, Raffaele Siano, Jeremy Szymczak, Matthias Wolf, Laure Guillou
Software Mentions: 8
Published: over 6 years ago

10.3389/fgene.2019.01221

Increased Adaptive Variation Despite Reduced Overall Genetic Diversity in a Rapidly Adapting Invader
Cited by: 39
Author(s): D. Selechnik, Mark F. Richardson, Richard Shine, Jayna L. DeVore, Simon Ducatez, Lee A. Rollins
Software Mentions: 8
Published: almost 7 years ago

10.1128/mSystems.01356-20

Spinal Cord Injury Changes the Structure and Functional Potential of Gut Bacterial and Viral Communities
Cited by: 26
Author(s): Jingjie Du, Ahmed A. Zayed, Kristina A. Kigerl, Kylie Zane, Matthew B. Sullivan, Phillip G. Popovich
Software Mentions: 8
Published: about 5 years ago

10.3390/plants10081512

Floral Scent Evolution in the Genus Jaborosa (Solanaceae): Influence of Ecological and Environmental Factors
Cited by: 6
Author(s): Marcela Moré, Florencia Soteras, Ana C. Ibañez, Stefan Dötterl, Andrea A. Cocucci, Robert A. Raguso
Software Mentions: 8
Published: about 5 years ago

10.3389/fpls.2017.00930

The Influence of Land Use Intensity on the Plant-Associated Microbiome of Dactylis glomerata L.
Cited by: 44
Author(s): Jennifer Estendorfer, Barbara Stempfhuber, Paula Haury, Gisle Vestergaard, Matthias C. Rillig, Jasmin Joshi, Peter Schröder, Michael Schloter
Software Mentions: 8
Published: about 9 years ago

10.1371/journal.pone.0191625

Associations between sexual habits, menstrual hygiene practices, demographics and the vaginal microbiome as revealed by Bayesian network analysis
Cited by: 76
Author(s): Noelle Noyes, Kyu Chul Cho, Jacques Ravel, Larry J. Forney, Zaid Abdo
Software Mentions: 8
Published: over 8 years ago

10.1002/ece3.6913

Changes in beta diversity and species functional traits differ between saplings and mature trees in an old‐growth forest
Cited by: 1
Author(s): David Anthony Kirk, Marie‐Hélène Brice, Michael S. W. Bradstreet, Ken A. Elliott
Software Mentions: 8
Published: over 5 years ago

10.1038/s41598-020-69374-4

Against all odds: a tale of marine range expansion with maintenance of extremely high genetic diversity
Cited by: 8
Author(s): Joana Isabel Robalo, Sara Martins Francisco, Catarina Vendrell, Cristina S. Lima, Ana Pereira, Benedikt Brunner, Mamadou Dia, Leonel Serrano Gordo, Rita Castilho
Software Mentions: 8
Published: about 6 years ago

10.3389/fcvm.2019.00167

SS-31 Peptide Reverses the Mitochondrial Fragmentation Present in Fibroblasts From Patients With DCMA, a Mitochondrial Cardiomyopathy
Cited by: 21
Author(s): Pranav Machiraju, Xuemei Wang, Rasha Sabouny, Joshua Huang, Tian Zhao, Fatima Iqbal, Melissa A. King, Dimple Prasher, A Lodha, Nerea Jimenez-Tellez, Amir Ravandi, Bob Argiropoulos, David S. Sinasac, Aneal Khan, Timothy E. Shutt, Steven C. Greenway
Software Mentions: 8
Published: almost 7 years ago

10.1038/s41598-020-66865-2

Reproductive hormones mediate changes in the gut microbiome during pregnancy and lactation in Phayre’s leaf monkeys
Cited by: 37
Author(s): Elizabeth K. Mallott, Carola Borries, Andreas Koenig, Katherine R. Amato, Amy Lu
Software Mentions: 8
Published: about 6 years ago

10.1002/ece3.7579

Molecular diet analysis of neotropical bats based on fecal DNA metabarcoding
Cited by: 36
Author(s): Melissa R. Ingala, Nancy B. Simmons, Claudia Wultsch, Konstantinos Krampis, Kaiya L. Provost, Susan L. Perkins
Software Mentions: 8
Published: over 5 years ago

10.1038/s41396-021-00949-3

Social networks strongly predict the gut microbiota of wild mice
Cited by: 51
Author(s): Aura Raulo, Bryony Allen, Tanya Troitsky, Arild Husby, Josh A. Firth, Tim Coulson, Sarah C. L. Knowles
Software Mentions: 8
Published: over 5 years ago

10.3389/fgene.2021.683037

De novo Transcriptome Sequencing Coupled With Co-expression Analysis Reveal the Transcriptional Regulation of Key Genes Involved in the Formation of Active Ingredients in Peucedanum praeruptorum Dunn Under Bolting Period
Cited by: 7
Author(s): Cheng Song, Xiaoli Li, Bin Jia, Li Liu, Jinmei Ou, Bangxing Han
Software Mentions: 8
Published: about 5 years ago

10.1038/s41396-019-0563-0

Swift evolutionary response of microbes to a rise in anthropogenic mercury in the Northern Hemisphere
Cited by: 11
Author(s): Matti O. Ruuskanen, Stéphane Aris‐Brosou, Alexandre J. Poulain
Software Mentions: 8
Published: over 6 years ago

10.1038/s41598-020-69160-2

Individual-based population genomics reveal different drivers of adaptation in sympatric fish
Cited by: 10
Author(s): Héctor Torrado, Carlos Carreras, Núria Raventós, Enrique Macpherson, Marta Pascual
Software Mentions: 8
Published: about 6 years ago

10.1128/mSystems.00152-21

Differential Analysis of Longitudinal Methicillin-Resistant Staphylococcus aureus Colonization in Relation to Microbial Shifts in the Nasal Microbiome of Neonatal Piglets
Cited by: 2
Author(s): Shriram Patel, Abel A. Vlasblom, Koen M. Verstappen, Aldert Zomer, Ad C. Fluit, Malbert R. C. Rogers, Jaap A. Wagenaar, Marcus J. Claesson, Birgitta Duim
Software Mentions: 8
Published: about 5 years ago

10.1128/mSystems.01150-20

Distinct Community Assembly Processes of Abundant and Rare Soil Bacteria in Coastal Wetlands along an Inundation Gradient
Cited by: 36
Author(s): Gui‐Feng Gao, Dan Peng, Binu M. Tripathi, Yihui Zhang, Haiyan Chu
Software Mentions: 8
Published: over 5 years ago

10.1186/s40168-018-0434-3

Microbiome and ecotypic adaption of Holcus lanatus (L.) to extremes of its soil pH range, investigated through transcriptome sequencing
Cited by: 20
Author(s): Ellen L. Young, Manus Carey, Andrew A. Meharg, Caroline Meharg
Software Mentions: 8
Published: over 8 years ago

10.1128/mSystems.00852-20

Virulence of the Pathogen Porphyromonas gingivalis Is Controlled by the CRISPR-Cas Protein Cas3
Cited by: 16
Author(s): José O. Solbiati, Ana E. Duran-Pinedo, Fernanda Godoy Rocha, Frank C. Gibson, Jorge Frias-Lopez
Software Mentions: 8
Published: almost 6 years ago

10.1128/mSystems.00112-21

Metagenomic Analysis of Common Intestinal Diseases Reveals Relationships among Microbial Signatures and Powers Multidisease Diagnostic Models
Cited by: 10
Author(s): Puzi Jiang, Sicheng Wu, Qibin Luo, Xing‐Ming Zhao, Weihua Chen
Software Mentions: 8
Published: about 5 years ago

10.1002/ece3.2723

Different categories of biodiversity explain productivity variation after fertilization in a Tibetan alpine meadow community
Cited by: 19
Author(s): Xiaolong Zhou, Zhihao Guo, Pengfei Zhang, Honglin Li, Chengjin Chu, Xilai Li, Guozhen Du
Software Mentions: 8
Published: over 9 years ago

10.1038/s41598-017-14785-z

Poly-β-hydroxybutyrate administration during early life: effects on performance, immunity and microbial community of European sea bass yolk-sac larvae
Cited by: 18
Author(s): Andrea Franke, Olivia Roth, Peter De Schryver, Till Bayer, Linsey Garcia‐Gonzalez, Sven Künzel, Peter Bossier, Joanna J. Miest, Catriona Clemmesen
Software Mentions: 8
Published: almost 9 years ago

10.1128/Spectrum.00536-21

Mild and Severe SARS-CoV-2 Infection Induces Respiratory and Intestinal Microbiome Changes in the K18-hACE2 Transgenic Mouse Model
Cited by: 16
Author(s): Brittany Seibert, C. Joaquín Cáceres, Stivalis Cárdenas-García, Silvia Carnaccini, Ginger Geiger, Daniela S. Rajão, Elizabeth A. Ottesen, Daniel R. Pérez
Software Mentions: 8
Published: about 5 years ago

10.1371/journal.pone.0170176

Temporal and Spatial Scales Matter: Circannual Habitat Selection by Bird Communities in Vineyards
Cited by: 35
Author(s): Claire Guyot, Raphaël Arlettaz, Pius Korner, Alain Jacot
Software Mentions: 8
Published: over 9 years ago

10.1186/s40168-018-0468-6

Multilevel social structure and diet shape the gut microbiota of the gelada monkey, the only grazing primate
Cited by: 44
Author(s): Pål Trosvik, Eric J. de Muinck, Eli Knispel Rueness, Peter J. Fashing, Evan C. Beierschmitt, Kadie R. Callingham, Jacob B. Kraus, Thomas H. Trew, Amera Moges, Addisu Mekonnen, Vivek V. Venkataraman, Nga Nguyen
Software Mentions: 8
Published: over 8 years ago

10.1371/journal.pgen.1008658

Parallelism in eco-morphology and gene expression despite variable evolutionary and genomic backgrounds in a Holarctic fish
Cited by: 63
Author(s): Arne Jacobs, Madeleine Carruthers, Andrey A. Yurchenko, Н. В. Гордеева, S. S. Alekseyev, Oliver E. Hooker, Jong S. Leong, David R. Minkley, Eric B. Rondeau, Ben F. Koop, Colin E. Adams, Kathryn R. Elmer
Software Mentions: 8
Published: over 6 years ago

10.1371/journal.pone.0246491

Trophic structure of a nektobenthic community exploited by a multispecific bottom trawling fishery in Northeastern Brazil
Cited by: 3
Author(s): Alex Souza Lira, Flávia Lucena‐Frédou, Frédéric Ménard, Thierry Frédou, Júlio Guazzelli Gonzalez, Valdimere Ferreira, José Souto Rosa Filho, Jean-Marie Munaron, François Le Loc’h
Software Mentions: 8
Published: over 5 years ago

10.3389/fmicb.2019.01834

Captivity and Infection by the Fungal Pathogen Batrachochytrium salamandrivorans Perturb the Amphibian Skin Microbiome
Cited by: 35
Author(s): Kieran A. Bates, Jennifer Shelton, Victoria L. Mercier, Kevin Hopkins, Xavier A. Harrison, Silviu O. Petrovan, Matthew C. Fisher
Software Mentions: 8
Published: about 7 years ago

10.1080/19490976.2021.1903289

Translational activity is uncoupled from nucleic acid content in bacterial cells of the human gut microbiota
Cited by: 9
Author(s): Mariia Taguer, Ben Shapiro, Corinne F. Maurice
Software Mentions: 8
Published: over 5 years ago

10.1038/s41598-021-96160-7

Wolves, dogs and humans in regular contact can mutually impact each other’s skin microbiota
Cited by: 6
Author(s): Stefanie U. Wetzels, Cameron Strachan, Beate Conrady, Martin Wagner, Iwan Burgener, Zsófia Virányi, Evelyne Selberherr
Software Mentions: 8
Published: about 5 years ago

10.1371/journal.pone.0208370

Measuring popularity of ecological topics in a temporal dynamical knowledge network
Cited by: 3
Author(s): Tian-Yuan Huang, Bin Zhao
Software Mentions: 8
Published: over 7 years ago

10.7717/peerj.4746

Exotic lagomorph may influence eagle abundances and breeding spatial aggregations: a field study and meta-analysis on the nearest neighbor distance
Cited by: 11
Author(s): Facundo Barbar, Gonzalo Oscar Ignazi, Fernando Hiraldo, Sergio A. Lambertucci
Software Mentions: 8
Published: over 8 years ago

10.1002/ece3.2641

Convergent evolution in social swallows (Aves: Hirundinidae)
Cited by: 12
Author(s): Allison E. Johnson, Jonathan S. Mitchell, Mary Bomberger Brown
Software Mentions: 8
Published: over 9 years ago

10.3389/fmicb.2021.696398

The Microbiome of the Medicinal Plants Achillea millefolium L. and Hamamelis virginiana L.
Cited by: 10
Author(s): Simon Sauer, Leon Dlugosch, Dietmar R. Kammerer, Florian C. Stintzing, Meinhard Simon
Software Mentions: 8
Published: about 5 years ago

10.1038/s41396-020-0621-7

Spatiotemporal dynamics of the archaeal community in coastal sediments: assembly process and co-occurrence relationship
Cited by: 120
Author(s): Jiwen Liu, Shangqing Zhu, Xiaoyue Liu, Peng Yao, Tiantian Ge, Xiao‐Hua Zhang
Software Mentions: 8
Published: over 6 years ago

10.1186/s13073-017-0428-y

Functional implications of microbial and viral gut metagenome changes in early stage L-DOPA-naïve Parkinson’s disease patients
Cited by: 378
Author(s): Janis R. Bedarf, Falk Hildebrand, Luís Pedro Coelho, Shinichi Sunagawa, Mohammad Bahram, Felix Goeser, Peer Bork, Ullrich Wüllner
Software Mentions: 8
Published: over 9 years ago

10.1093/femsec/fiaa244

Utilization of low-molecular-weight organic compounds by the filterable fraction of a lotic microbiome
Cited by: 0
Author(s): Lydia-Ann J. Ghuneim, Marco A. Distaso, Tatyana Chernikova, Rafael Bargiela, Evgenii A. Lunev, Aleksei A. Korzhenkov, Stepan V. Toshchakov, David Rojo, Coral Barbas, Manuel Ferrer, Olga V. Golyshina, Peter N. Golyshin, Davey L. Jones
Software Mentions: 8
Published: almost 6 years ago

10.1007/s12031-020-01787-2

Studying Autism Using Untargeted Metabolomics in Newborn Screening Samples
Cited by: 13
Author(s): Julie Courraud, Madeleine Ernst, Susan Svane Laursen, David M. Hougaard, Arieh Cohen
Software Mentions: 8
Published: over 5 years ago

10.1016/j.gpb.2019.09.007

Antidiabetic Effects of Gegen Qinlian Decoction via the Gut Microbiota Are Attributable to Its Key Ingredient Berberine
Cited by: 59
Author(s): Xizhan Xu, Zezheng Gao, Fuchao Yang, Yingying Yang, Liang Chen, Han Chieh Lin, Na Zhao, Jiayue Xu, Xinmiao Wang, Yue Ma, Lian Shu, Xueyou Hu, Na Lyu, Yuanlong Pan, Baoli Zhu, Linhua Zhao, Xiaolin Tong, Jun Wang
Software Mentions: 8
Published: almost 6 years ago

10.1111/eva.12932

Fine‐scale seascape genomics of an exploited marine species, the common cockle <i>Cerastoderma edule</i>, using a multimodelling approach
Cited by: 25
Author(s): Ilaria Coscia, Sophie B. Wilmes, Joseph E. Ironside, Alice Goward‐Brown, Enda O’Dea, Shelagh K. Malham, Allan D. McDevitt, Peter Robins
Software Mentions: 8
Published: over 6 years ago

10.1111/eva.12626

Capturing genetic variation in crop wild relatives: An evolutionary approach
Cited by: 20
Author(s): Paul A. Egan, Anne Muola, Johan A. Stenberg
Software Mentions: 8
Published: over 8 years ago

10.12688/f1000research.13541.1

archiDART v3.0: A new data analysis pipeline allowing the topological analysis of plant root systems
Cited by: 20
Author(s): Benjamin Delory, Li Mao, Christopher N. Topp, Guillaume Lobet
Software Mentions: 8
Published: over 8 years ago

10.1371/journal.pone.0251416

Compounds from plantar foot sweat, nesting material, and urine show strain patterns associated with agonistic and affiliative behaviors in group housed male mice, Mus musculus
Cited by: 4
Author(s): Amanda J. Barabas, Helena A. Soini, Miloš V. Novotný, David R. Williams, Jacob A. Desmond, Jeffrey R. Lucas, Marisa A. Erasmus, Heng-Wei Cheng, Brianna N. Gaskill
Software Mentions: 8
Published: over 5 years ago

10.1007/s10661-016-5710-8

Is the macrophyte diversification along the trophic gradient distinct enough for river monitoring?
Cited by: 14
Author(s): Krzysztof Szoszkiewicz, Anna Budka, Karol Pietruczuk, Dariusz Kayzer, Daniel Gebler
Software Mentions: 8
Published: almost 10 years ago

10.3389/fmicb.2021.632935

Co-Occurrence of Listeria spp. and Spoilage Associated Microbiota During Meat Processing Due to Cross-Contamination Events
Cited by: 19
Author(s): Benjamin Zwirzitz, Stefanie U. Wetzels, Emmanuel D. Dixon, Svenja Fleischmann, Evelyne Selberherr, Sarah Thalguter, Narciso M. Quijada, Monika Dzieciol, Martin Wagner, Beatrix Stessl
Software Mentions: 8
Published: over 5 years ago

10.3390/genes10110875

The Role of Plasticity and Adaptation in the Incipient Speciation of a Fire Salamander Population
Cited by: 6
Author(s): Joana Sabino‐Pinto, Daniel J. Goedbloed, Eugenia Sanchez, Thomas Czypionka, Arne W. Nolte, Sebastian Steinfartz
Software Mentions: 8
Published: almost 7 years ago

10.1371/journal.pone.0217804

Longitudinal microbiome profiling reveals impermanence of probiotic bacteria in domestic pigeons
Cited by: 12
Author(s): Kirsten Grond, Julie Perreau, Wesley T. Loo, A. James Spring, Colleen M. Cavanaugh, Sarah M. Hird
Software Mentions: 8
Published: about 7 years ago

10.1371/journal.pone.0122070

Using Lidar Data to Analyse Sinkhole Characteristics Relevant for Understory Vegetation under Forest Cover—Case Study of a High Karst Area in the Dinaric Mountains
Cited by: 74
Author(s): Milan Kobal, Irena Bertoncelj, Jinhu Wang, Igor Dak̇skobler, Lado Kutnar
Software Mentions: 8
Published: over 11 years ago

10.3390/jof6040372

Monitoring and Surveillance of Aerial Mycobiota of Rice Paddy through DNA Metabarcoding and qPCR
Cited by: 11
Author(s): S. Franco Ortega, Ilario Ferrocino, Ian Adams, Simone Silvestri, D. Spadaro, M. L. Gullino, Neil Boonham
Software Mentions: 8
Published: over 5 years ago

10.1186/s40168-019-0716-4

The association between pneumococcal vaccination, ethnicity, and the nasopharyngeal microbiota of children in Fiji
Cited by: 11
Author(s): Laura K. Boelsen, Eileen M. Dunne, Moana Mika, Stefanie Eggers, Cattram Nguyen, Felisita Tupou Ratu, Fiona M. Russell, E. Kim Mulholland, Markus Hilty, Catherine Satzke
Software Mentions: 8
Published: about 7 years ago

10.3390/toxins13080583

Metaproteomics Reveals Alteration of the Gut Microbiome in Weaned Piglets Due to the Ingestion of the Mycotoxins Deoxynivalenol and Zearalenone
Cited by: 6
Author(s): Johan S. Sáenz, Alina Kurz, Ursula Ruczizka, Moritz Bünger, Maximiliane Dippel, Veronika Nagl, Bertrand Grenier, Andrea Ladinig, Jana Seifert, Evelyne Selberherr
Software Mentions: 8
Published: about 5 years ago

10.1038/s41598-019-55706-6

Tailings microbial community profile and prediction of its functionality in basins of tungsten mine
Cited by: 26
Author(s): Ana Paula Chung, Carina Coimbra, Pedro Farias, Romeu Francisco, Rita Branco, Francisco Veiga Simão, Érico Rodrigues Gomes, Alcides Pereira, Maria Cristina Vila, António Fiúza, Martin Steen Mortensen, Søren J. Sørensen, Paula V. Morais
Software Mentions: 8
Published: over 6 years ago

10.1038/s41598-021-91118-1

The presence of Pseudogymnoascus destructans, a fungal pathogen of bats, correlates with changes in microbial metacommunity structure
Cited by: 3
Author(s): Matthew Grisnik, Joshua B. Grinath, Donald M. Walker
Software Mentions: 8
Published: over 5 years ago

10.3389/fmicb.2021.676615

Attributes of Drying Define the Structure and Functioning of Microbial Communities in Temperate Riverbed Sediment
Cited by: 7
Author(s): José Schreckinger, Michael Mutz, Clara Mendoza‐Lera, Aline Frossard
Software Mentions: 8
Published: about 5 years ago

10.1371/journal.pone.0187758

Habitat- and soil-related drivers of the root-associated fungal community of Quercus suber in the Northern Moroccan forest
Cited by: 20
Author(s): Fatima Zahra Maghnia, Younes Abbas, Frédéric Mahe, Benaissa Kerdouh, Estelle Tournier, Mohamed Ouadji, Pierre Tisseyre, Yves Prin, Naïma El Ghachtouli, Salah Eddine Bakkali Yakhlef, Robin Duponnois, Hervé Sanguin
Software Mentions: 8
Published: almost 9 years ago

10.1038/s41598-021-89065-y

Exposure to airborne bacteria depends upon vertical stratification and vegetation complexity
Cited by: 24
Author(s): Jake M. Robinson, Christian Cando‐Dumancela, Rachael E. Antwis, Ross Cameron, Craig Liddicoat, Ravin Poudel, Philip Weinstein, Martin F. Breed
Software Mentions: 8
Published: over 5 years ago

10.7717/peerj.1356

Urban habitat complexity affects species richness but not environmental filtering of morphologically-diverse ants
Cited by: 22
Author(s): Alessandro Ossola, M. Nash, Fiona J. Christie, Amy K. Hahs, Stephen J. Livesley
Software Mentions: 8
Published: almost 11 years ago

10.7717/peerj.6263

Variation in wild pea (<i>Pisum sativum</i>subsp.<i>elatius</i>) seed dormancy and its relationship to the environment and seed coat traits
Cited by: 32
Author(s): Iveta Hradilová, Martin Duchoslav, Jan Brus, Vilém Pechanec, Miroslav Hýbl, Pavel Kopecký, Lucie Smržová, Nikola Štefelová, Tadeáš Vaclávek, Michael Bariotakis, Jitka Machalová, Karel Hron, Stergios Pirintsos, Petr Smýkal
Software Mentions: 8
Published: over 7 years ago

10.1038/s41598-019-53342-8

Mixed-Cropping Between Field Pea Varieties Alters Root Bacterial and Fungal Communities
Cited by: 12
Author(s): Anthony A. Horner, Samuel S. Browett, Rachael E. Antwis
Software Mentions: 8
Published: almost 7 years ago

10.1002/ece3.6172

Habitat transitions alter the adaptive landscape and shape phenotypic evolution in needlefishes (Belonidae)
Cited by: 10
Author(s): Matthew A. Kolmann, Michael D. Burns, Justin Y. K. Ng, Nathan R. Lovejoy, Devin D. Bloom
Software Mentions: 8
Published: over 6 years ago

10.1038/s41598-019-47953-4

Fecal microbiome and metabolome of infants fed bovine MFGM supplemented formula or standard formula with breast-fed infants as reference: a randomized controlled trial
Cited by: 61
Author(s): Xuan He, Mariana Parenti, Tove Grip, Bo Lönnerdal, Niklas Timby, Magnus Domellöf, Olle Hernell, Carolyn M. Slupsky
Software Mentions: 8
Published: about 7 years ago

10.1371/journal.pone.0257471

Deciphering the low abundance microbiota of presumed aseptic hip and knee implants
Cited by: 2
Author(s): Charles Carr, Hannah Wilcox, Jeremy P. Burton, Sharanya Menon, Kait F. Al, David B. O’Gorman, Brent A. Lanting, Edward M. Vasarhelyi, Michael E. Neufeld, Matthew G. Teeter
Software Mentions: 8
Published: almost 5 years ago

10.1186/s40168-017-0371-6

Multi-level comparisons of cloacal, skin, feather and nest-associated microbiota suggest considerable influence of horizontal acquisition on the microbiota assembly of sympatric woodlarks and skylarks
Cited by: 55
Author(s): H. Pieter J. van Veelen, Joana Falcão Salles, B. Irene Tieleman
Software Mentions: 8
Published: almost 9 years ago

10.3389/fmicb.2020.610269

Zebra Mussel Holobionts Fix and Recycle Nitrogen in Lagoon Sediments
Cited by: 15
Author(s): Ugo Marzocchi, Stefano Bonaglia, Anastasija Zaiko, Grazia Marina Quero, Irma Vybernaite‐Lubiene, Tobia Politi, Aurelija Samuilovienė, Mindaugas Žilius, Marco Bartoli, Ulisse Cardini
Software Mentions: 8
Published: over 5 years ago

10.1371/journal.pone.0209200

Effects of urbanization on the foraging ecology and microbiota of the generalist seabird Larus argentatus
Cited by: 61
Author(s): Matthew Fuirst, Richard R. Veit, Megan Hahn, Nolwenn M. Dheilly, Lesley H. Thorne
Software Mentions: 8
Published: over 7 years ago

10.1002/ece3.6390

Can ancestry and morphology be used as surrogates for species niche relationships?
Cited by: 5
Author(s): Friedrich W. Keppeler, Kirk O. Winemiller
Software Mentions: 8
Published: over 6 years ago

10.1186/s40168-019-0630-9

Environmental filtering drives distinct continental atlases of soil archaea between dryland and wetland agricultural ecosystems
Cited by: 103
Author(s): Shuo Jiao, Ye Xu, Jie Zhang, Yahai Lu
Software Mentions: 8
Published: over 7 years ago

10.1038/s41598-019-47117-4

Using a trait-based approach to understand the efficiency of a selective device in a multispecific fishery
Cited by: 7
Author(s): Maud Mouchet, Manon Poirson, Fabien Morandeau, Camille Vogel, Sonia Méhault, Dorothée Kopp
Software Mentions: 8
Published: about 7 years ago

10.1186/s40168-018-0593-2

Gut microbiome composition is associated with spatial structuring and social interactions in semi-feral Welsh Mountain ponies
Cited by: 61
Author(s): Rachael E. Antwis, Jessica M. D. Lea, Bryony Unwin, Susanne Shultz
Software Mentions: 8
Published: almost 8 years ago

10.1186/s40168-016-0213-y

Evolution of gut microbiota composition from birth to 24 weeks in the INFANTMET Cohort
Cited by: 361
Author(s): Colin Hill, Denise B. Lynch, Kiera Murphy, Marynka Ulaszewska, Ian B. Jeffery, Carol Anne O’Shea, Claire Watkins, Eugene M. Dempsey, Fulvio Mattivi, Kieran Tuohy, R. Paul Ross, C. Anthony Ryan, Paul W. O’Toole, Catherine Stanton
Software Mentions: 8
Published: over 9 years ago

10.1002/ece3.6305

Effects of diet, habitat, and phylogeny on the fecal microbiome of wild African savanna (<i>Loxodonta africana</i>) and forest elephants (<i>L. cyclotis</i>)
Cited by: 16
Author(s): Kris Budd, Joe C. Gunn, Tabitha Finch, Katy E. Klymus, Noah Sitati, Lori S. Eggert
Software Mentions: 8
Published: over 6 years ago

10.1038/s41598-021-92658-2

Profiling temporal dynamics of acetogenic communities in anaerobic digesters using next-generation sequencing and T-RFLP
Cited by: 10
Author(s): Abhijeet Singh, Bettina Müller, Anna Schnürer
Software Mentions: 8
Published: about 5 years ago