Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0257471

https://doi.org/10.1371/journal.pone.0257471

Deciphering the low abundance microbiota of presumed aseptic hip and knee implants

Cited by: 2
Author(s): Charles Carr, Hannah Wilcox, Jeremy P. Burton, Sharanya Menon, Kait F. Al, David B. O’Gorman, Brent A. Lanting, Edward M. Vasarhelyi, Michael E. Neufeld, Matthew G. Teeter
Published: about 3 years ago

Software Mentions 8

bioconductor: ALDEx2
Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account
Papers that mentioned: 136
bioconductor: decontam
Identify Contaminants in Marker-gene and Metagenomics Sequencing Data
Papers that mentioned: 76
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: ggpubr
'ggplot2' Based Publication Ready Plots
Papers that mentioned: 856
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
cran: zCompositions
Treatment of Zeros, Left-Censored and Missing Values in Compositional Data Sets
Papers that mentioned: 56
pypi: decontam
Decontaminate paired-end DNA sequencing data
Papers that mentioned: 76