Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fmicb.2018.01323

https://doi.org/10.3389/fmicb.2018.01323

Cited by: 37
Author(s): Dylan Dahan, Brooke A. Jude, Regina Lamendella, Felicia Keesing, Gabriel G. Perron
Published: almost 6 years ago

Software Mentions 9

bioconductor: dada2
Accurate, high-resolution sample inference from amplicon sequencing data
Papers that mentioned: 274
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: ade4
Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences
Papers that mentioned: 809
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: optparse
Command Line Option Parser
Papers that mentioned: 15
cran: uclust
Clustering and Classification Inference with U-Statistics
Papers that mentioned: 454
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: stats
Calculator-style statistical functions
Papers that mentioned: 3,105