Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fmicb.2019.01805

https://doi.org/10.3389/fmicb.2019.01805

Fishing in the Soup – Pathogen Detection in Food Safety Using Metabarcoding and Metagenomic Sequencing

Cited by: 44
Author(s): Josephine Grützke, Burkhard Malorny, Jens A. Hammerl, Anne Busch, Simon H. Tausch, Herbert Tomaso, Carlus Deneke
Published: about 5 years ago

Software Mentions 8

bioconductor: dada2
Accurate, high-resolution sample inference from amplicon sequencing data
Papers that mentioned: 274
bioconductor: ggtree
an R package for visualization of tree and annotation data
Papers that mentioned: 474
cran: cowplot
Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Papers that mentioned: 298
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: uclust
Clustering and Classification Inference with U-Statistics
Papers that mentioned: 454
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: kraken
OCR/HTR engine for all the languages
Papers that mentioned: 24
pypi: seqtk
seqtk provides various tools for Sequence.
Papers that mentioned: 213