Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7717/peerj.4925

https://doi.org/10.7717/peerj.4925

Non-biological synthetic spike-in controls and the AMPtk software pipeline improve mycobiome data

Cited by: 166
Author(s): Jonathan M. Palmer, Michelle A. Jusino, Mark T. Banik, Daniel L. Lindner
Published: over 6 years ago

Software Mentions 8

cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: amptk
AMPtk: amplicon tool kit
Papers that mentioned: 4
pypi: biom-format
Biological Observation Matrix (BIOM) format
Papers that mentioned: 11
pypi: biopython
Freely available tools for computational molecular biology.
Papers that mentioned: 114
pypi: edlib
Lightweight, super fast library for sequence alignment using edit (Levenshtein) distance.
Papers that mentioned: 11
pypi: Ion
Ion is an MVC Web Framework
Papers that mentioned: 368
pypi: matplotlib
Python plotting package
Papers that mentioned: 1,045
pypi: numpy
Fundamental package for array computing in Python
Papers that mentioned: 832