Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1128/mSystems.00152-21

https://doi.org/10.1128/mSystems.00152-21

Differential Analysis of Longitudinal Methicillin-Resistant Staphylococcus aureus Colonization in Relation to Microbial Shifts in the Nasal Microbiome of Neonatal Piglets

Cited by: 2
Author(s): Shriram Patel, Abel A. Vlasblom, Koen M. Verstappen, Aldert Zomer, Ad C. Fluit, Malbert R. C. Rogers, Jaap A. Wagenaar, Marcus J. Claesson, Birgitta Duim
Published: over 3 years ago

Software Mentions 8

bioconductor: ComplexHeatmap
Make Complex Heatmaps
Papers that mentioned: 565
bioconductor: decontam
Identify Contaminants in Marker-gene and Metagenomics Sequencing Data
Papers that mentioned: 76
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
cran: rmcorr
Repeated Measures Correlation
Papers that mentioned: 70
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
cran: zCompositions
Treatment of Zeros, Left-Censored and Missing Values in Compositional Data Sets
Papers that mentioned: 56
pypi: decontam
Decontaminate paired-end DNA sequencing data
Papers that mentioned: 76