Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1111/mec.15484

https://doi.org/10.1111/mec.15484

Cited by: 43
Author(s): Olivier Laroche, Oliver Kersten, Craig R. Smith, Erica Goetze
Published: almost 4 years ago

Software Mentions 8

bioconductor: dada2
Accurate, high-resolution sample inference from amplicon sequencing data
Papers that mentioned: 274
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: metacoder
Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data
Papers that mentioned: 32
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562
pypi: graphlan
GraPhlAn is a software tool for producing high-quality circular representations of taxonomic and phylogenetic trees. GraPhlAn focuses on concise, integrative, informative, and publication-ready representations of phylogenetically- and taxonomically-driven investigation.
Papers that mentioned: 5
pypi: vsearch
The Head First Python Search Tools
Papers that mentioned: 284