Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: tidyverse
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/tidyverse
Easily Install and Load the 'Tidyverse'
9 versions
Latest release: about 1 year ago
366 dependent packages
1,267,071 downloads last month
Papers Mentioning tidyverse 1,023
10.3390/biom11020338
Fungal X-Intrinsic Protein Aquaporin from Trichoderma atroviride: Structural and Functional ConsiderationsCited by: 1
Author(s): Maroua Ben Amira, Mohamed Faize, Magnus Karlsson, Mukesh Dubey, Magdalena Frąc, Jacek Panek, Boris Fumanal, Aurélie Gousset-Dupont, Jean-Louis Julien, Hatem Chaar, Daniel Auguin, Robin Mom, Philippe Label, Jean-Stéphane Venisse
Software Mentions: 12
Published: about 3 years ago
10.3389/fgene.2018.00278
RNA Sequencing (RNA-Seq) Reveals Extremely Low Levels of Reticulocyte-Derived Globin Gene Transcripts in Peripheral Blood From Horses (Equus caballus) and Cattle (Bos taurus)Cited by: 11
Author(s): Carolina N. Correia, Kirsten E. McLoughlin, Nicolas C. Nalpas, David A. Magee, John A. Browne, Kévin Rue-Albrecht, Stephen V. Gordon, David E. MacHugh
Software Mentions: 12
Published: almost 6 years ago
10.1371/journal.pone.0236135
Fungi, bacteria and oomycota opportunistically isolated from the seagrass, Zostera marinaCited by: 25
Author(s): Cassandra L. Ettinger, Jonathan A. Eisen
Software Mentions: 12
Published: almost 4 years ago
10.1371/journal.pcbi.1008991
Memes: A motif analysis environment in R using tools from the MEME SuiteCited by: 22
Author(s): Spencer L. Nystrom, Daniel J. McKay
Software Mentions: 12
Published: over 2 years ago
10.7717/peerj.11376
ProkEvo: an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analysesCited by: 4
Author(s): Natasha Pavlovikj, João Carlos Gomes-Neto, Jitender S. Deogun, Andrew K. Benson
Software Mentions: 12
Published: almost 3 years ago
10.1002/ece3.7130
QuoVidi: An open‐source web application for the organization of large‐scale biological treasure huntsCited by: 8
Author(s): Guillaume Lobet, Charlotte Descamps, Lola Leveau, Alain Guillet, Jean-François Rees
Software Mentions: 12
Published: over 3 years ago
10.3389/fphar.2020.563751
Countrywide Survey of Plants Used for Liver Disease Management by Traditional Healers in Burkina FasoCited by: 1
Author(s): André Tibiri, Sébastien Boria, Tata Kadiatou Traoré, Noufou Ouédraogo, Aude Nikièma, Souleymane Ganaba, J. Compaoré, Issiaka Ouédraogo, Innocent Pierre Guissou, M Carraz
Software Mentions: 12
Published: over 3 years ago
10.3389/fonc.2019.01361
Development and Validation of an RNA-Seq-Based Prognostic Signature in NeuroblastomaCited by: 28
Author(s): Jianguo Zhou, Bo Liang, Sanli Jin, Hui-Ling Liao, Guocheng Du, Long Cheng, Hu Ma, Udo S. Gaipl
Software Mentions: 12
Published: over 4 years ago
10.1128/mSystems.00750-21
Comprehensive Wet-Bench and Bioinformatics Workflow for Complex Microbiota Using Oxford Nanopore TechnologiesCited by: 11
Author(s): Christoph Ammer‐Herrmenau, Nina Pfisterer, T. van den Berg, Ivana Gavrilova, Ahmad Amanzada, Shiv K. Singh, Alaa Mohamed, Rohia Alili, Eugeni Belda, Karine Clément, Ahmed Abd El Wahed, ElSagad Eltayeb Gady, Martin Haubrock, Tim Beißbarth, Volker Ellenrieder, Albrecht Neeße
Software Mentions: 12
Published: over 2 years ago
10.1128/mBio.02782-18
Fitness Cost of Aflatoxin Production in Aspergillus flavus When Competing with Soil Microbes Could Maintain Balancing SelectionCited by: 21
Author(s): Milton T. Drott, Tracy Debenport, Steven A. Higgins, Daniel H. Buckley, Michael G. Milgroom
Software Mentions: 12
Published: about 5 years ago
10.1186/s13567-021-00981-3
Immunogenicity and protective efficacy of a Streptococcus suis vaccine composed of six conserved immunogensCited by: 8
Author(s): Christine Weiße, Denise Dittmar, Beata Jakóbczak, Volker Florian, Nicole Schütze, Gottfried Alber, Kristin Klose, Stephan Michalik, Peter Valentin‐Weigand, Uwe Völker, Christoph Georg Baums
Software Mentions: 12
Published: over 2 years ago
10.1371/journal.pone.0236305
Defining the sediment prokaryotic communities of the Indian River Lagoon, FL, USA, an Estuary of National SignificanceCited by: 7
Author(s): David J. Bradshaw, Nicholas J. Dickens, John H. Trefry, Peter J. McCarthy
Software Mentions: 12
Published: over 3 years ago
10.7554/eLife.37551
Species and cell-type properties of classically defined human and rodent neurons and gliaCited by: 55
Author(s): Xiao Xu, Elitsa I Stoyanova, Agata E. Lemiesz, Jie Xing, Deborah C. Mash, Nathaniel Heintz
Software Mentions: 12
Published: over 5 years ago
10.3390/microorganisms9071526
Exploring the Individual Bacterial Microbiota of Questing Ixodes ricinus NymphsCited by: 2
Author(s): Aurélien Alafaci, Alexandre Crépin, Sabine Beaubert, Jean‐Marc Berjeaud, Vincent Delafont, Julien Verdon
Software Mentions: 12
Published: almost 3 years ago
10.1093/gigascience/giab011
The case for using mapped exonic non-duplicate reads when reporting RNA-sequencing depth: examples from pediatric cancer datasetsCited by: 2
Author(s): Holly C. Beale, Jacquelyn Roger, Matthew Cattle, Liam T. McKay, Drew Thompson, Katrina Learned, A. Geoffrey Lyle, Ellen Kephart, R. Currie, Du Linh Lam, Lauren Sanders, Jacob Pfeil, John Vivian, Isabel Bjork, Sofie R. Salama, David Haussler, Olena M. Vaske
Software Mentions: 12
Published: about 3 years ago
10.3390/toxins12070433
Low Doses of Mycotoxin Mixtures below EU Regulatory Limits Can Negatively Affect the Performance of Broiler Chickens: A Longitudinal StudyCited by: 26
Author(s): Oluwatobi Kolawole, A. Graham, Caroline Julie Donaldson, B. Owens, Wilfred A. Abia, Julie Meneely, M. Alcorn, Lisa Connolly, Chris Elliott
Software Mentions: 12
Published: almost 4 years ago
10.1111/test.12258
Some teaching resources using R with illustrative examples exploring COVID ‐19 dataCited by: 0
Author(s): Arthur Berg, Nour Hawila
Software Mentions: 12
Published: almost 3 years ago
10.1099/mgen.0.000524
BSGatlas: a unified Bacillus subtilis genome and transcriptome annotation atlas with enhanced information accessCited by: 12
Author(s): Adrian Sven Geissler, Christian Anthon, Ferhat Alkan, Enrique González-Tortuero, Line Dahl Poulsen, Thomas Beuchert Kallehauge, Anne Breüner, Stefan E. Seemann, Jeppe Vinther, Jan Gorodkin
Software Mentions: 12
Published: over 3 years ago
10.7717/peerj.5661
High-throughput metabarcoding reveals the effect of physicochemical soil properties on soil and litter biodiversity and community turnover across AmazoniaCited by: 17
Author(s): Camila Duarte Ritter, Alexander Zizka, Fabian Roger, Hanna Tuomisto, Christopher J. Barnes, R. Henrik Nilsson, Alexandre Antonelli
Software Mentions: 12
Published: over 5 years ago
10.3390/plants10050879
Multivariate Analysis of Morpho-Physiological Traits Reveals Differential Drought Tolerance Potential of Bread Wheat Genotypes at the Seedling StageCited by: 26
Author(s): Mohammed Mohi-Ud-Din, Md. Alamgir Hossain, Md. Motiar Rohman, Md. Nesar Uddin, Md. Sabibul Haque, Jalal Uddin Ahmed, Akbar Hossain, Mohamed M. Hassan, Mohammad Golam Mostofa
Software Mentions: 12
Published: about 3 years ago
10.7717/peerj.11923
Signature identification of relapse-related overall survival of early lung adenocarcinoma after radical surgeryCited by: 2
Author(s): Peng Han, Jiaqi Yue, Kangle Kong, Shan Huang, Pei Cao, Yu Deng, Ли Фан, Bo Zhao
Software Mentions: 12
Published: almost 3 years ago
10.1186/s13073-021-00869-z
Microbiota-associated risk factors for asymptomatic gut colonisation with multi-drug-resistant organisms in a Dutch nursing homeCited by: 13
Author(s): Quinten R Ducarmon, Elisabeth M. Terveer, Sam Nooij, Michelle N Bloem, Karuna E W Vendrik, Monique A. A. Caljouw, Ingrid M J G Sanders, S.M. van Dorp, M.C. Wong, Romy D. Zwittink, Ed J. Kuijper
Software Mentions: 12
Published: about 3 years ago
10.1534/g3.120.401612
A Reference Genome Sequence for Giant SequoiaCited by: 53
Author(s): Alison Dawn Scott, Aleksey V. Zimin, Daniela Puiu, Rachael E. Workman, Monica Britton, Sumaira Zaman, Madison Caballero, Andrew C. Read, Adam J. Bogdanove, Emily E. Burns, Jill L. Wegrzyn, Winston Timp, Steven L. Salzberg, David B. Neale
Software Mentions: 11
Published: over 3 years ago
10.1038/s41598-021-82043-4
PACIFIC: a lightweight deep-learning classifier of SARS-CoV-2 and co-infecting RNA virusesCited by: 10
Author(s): Pablo Acera Mateos, Renzo F. Balboa, Simon Easteal, Eduardo Eyras, Hardip R. Patel
Software Mentions: 11
Published: over 3 years ago
10.1038/s41598-021-93411-5
Epidemiological overview of multidimensional chromosomal and genome toxicity of cannabis exposure in congenital anomalies and cancer developmentCited by: 33
Author(s): Albert Stuart Reece, Gary Kenneth Hulse
Software Mentions: 11
Published: almost 3 years ago
10.3389/fpsyg.2021.545268
Beholden: The Emotional Effects of Having Eye Contact While Breaking Social NormsCited by: 2
Author(s): Ranjit K. Singh, Birgit J. Voggeser, Anja S. Göritz
Software Mentions: 11
Published: about 3 years ago
10.3390/pharmaceutics13060868
Surfactant-Assisted Distal Pulmonary Distribution of Budesonide Revealed by Mass Spectrometry ImagingCited by: 0
Author(s): Riccardo Zecchi, Pietro Franceschi, Laura Tigli, Barbara Pioselli, Valentina Mileo, Xabier Murgia, Fabrizio Salomone, Giuseppe Pieraccini, Haruo Usada, Augusto F. Schmidt, Noah H. Hillman, Matthew W. Kemp, Alan H. Jobe
Software Mentions: 11
Published: almost 3 years ago
10.1080/21623945.2019.1697563
Modelling the gene expression and the DNA-binding in the 3T3-L1 differentiating adipocytesCited by: 6
Author(s): Mahmoud Ahmed, Deok Ryong Kim
Software Mentions: 11
Published: over 5 years ago
10.3389/fpsyg.2021.638659
Syllable Complexity and Morphological Synthesis: A Well-Motivated Positive Complexity Correlation Across SubdomainsCited by: 2
Author(s): Shelece Easterday, Matthew Stave, Marc Allassonnière-Tang, Frank Seifart
Software Mentions: 11
Published: about 3 years ago
10.1007/s00394-020-02351-9
Gluten intake and metabolic health: conflicting findings from the UK BiobankCited by: 13
Author(s): Inken Behrendt, Mathias Faßhauer, Gerrit Eichner
Software Mentions: 11
Published: almost 4 years ago
10.3389/fpls.2020.599228
Hormopriming to Mitigate Abiotic Stress Effects: A Case Study of N9-Substituted Cytokinin Derivatives With a Fluorinated Carbohydrate MoietyCited by: 17
Author(s): Magdaléna Bryksová, Andrea Hybenová, Alba E. Hernándiz, Ondřej Novák, Aleš Pěnčík, Lukáš Spíchal, Nuria De Diego, Karel Doležal
Software Mentions: 11
Published: over 3 years ago
10.1093/bioinformatics/btz889
<i>CellBench</i>: <i>R/Bioconductor</i> software for comparing single-cell RNA-seq analysis methodsCited by: 17
Author(s): Shian Su, Luyi Tian, Xueyi Dong, Peter Hickey, Saskia Freytag, Matthew E. Ritchie
Software Mentions: 11
Published: over 4 years ago
10.1371/journal.pone.0238026
Funding sources and breast cancer research frameCited by: 3
Author(s): Wonkwang Jo
Software Mentions: 11
Published: over 3 years ago
10.3897/BDJ.8.e56876
Environmental DNA revealed the fish community of Hokkaido Island, Japan, after invasion by rainbow troutCited by: 5
Author(s): Akio Imamura, Kana Hayami, Masato Sakata, Toshifumi Minamoto
Software Mentions: 11
Published: over 3 years ago
10.1038/s41598-019-46850-0
Deep Learning using Convolutional LSTM estimates Biological Age from Physical ActivityCited by: 56
Author(s): Syed Ashiqur Rahman, Donald A. Adjeroh
Software Mentions: 11
Published: almost 5 years ago
10.3758/s13428-020-01385-5
Improving the robustness of infant lexical processing speed measuresCited by: 7
Author(s): Julia Egger, Caroline F. Rowland, Christina Bergmann
Software Mentions: 11
Published: about 4 years ago
10.1038/s41598-021-94324-z
Modest changes in Spi1 dosage reveal the potential for altered microglial function as seen in Alzheimer’s diseaseCited by: 17
Author(s): Ruth Jones, Robert Andrews, Peter Holmans, Matthew Hill, Philip R. Taylor
Software Mentions: 11
Published: almost 3 years ago
10.1038/s41598-020-60329-3
Neuroestrogen synthesis modifies neural representations of learned song without altering vocal imitation in developing songbirdsCited by: 11
Author(s): Daniel M. Vahaba, Amelia Hecsh, Luke Remage‐Healey
Software Mentions: 11
Published: about 4 years ago
10.3390/cancers12030692
Hypoxia-Induced Adaptations of miRNomes and Proteomes in Melanoma Cells and Their Secreted Extracellular VesiclesCited by: 29
Author(s): Geoffroy Walbrecq, Odile Lecha, Anthoula Gaigneaux, Miriam Rebecca Fougeras, Demetra Philippidou, Christiane Margue, Miléne Tetsi Nomigni, François Bernardin, Gunnar Dittmar, Iris Behrmann, Stephanie Kreis
Software Mentions: 11
Published: about 4 years ago
10.1017/S003329171800315X
A machine learning ensemble to predict treatment outcomes following an Internet intervention for depressionCited by: 37
Author(s): Rahel Pearson, Derek Pisner, Björn Meyer, Jason Shumake, Christopher G. Beevers
Software Mentions: 11
Published: over 5 years ago
10.7554/eLife.51276
A genome-wide view of the de-differentiation of central nervous system endothelial cells in cultureCited by: 39
Author(s): Mark F Sabbagh, Jeremy Nathans
Software Mentions: 11
Published: over 4 years ago
10.1186/s12894-019-0479-z
Where is the limit of prostate cancer biomarker research? Systematic investigation of potential prognostic and diagnostic biomarkersCited by: 2
Author(s): Anika Kremer, Tobias Kremer, Glen Kristiansen, Yuri Tolkach
Software Mentions: 11
Published: almost 5 years ago
10.3389/fmicb.2021.633659
Harnessing the Potential of Native Microbial Communities for Bioremediation of Oil Spills in the Iberian Peninsula NW CoastCited by: 14
Author(s): Maria Luis de Vilar Correia Brito Bôto, Catarina Magalhães, Rafaela Perdigão, Diogo A. M. Alexandrino, Joana P. Fernandes, Ana M. Bernabéu, Sandra Ramos, Maria F. Carvalho, Miguel Semedo, Julie LaRoche, C. Marisa R. Almeida, Ana P. Mucha
Software Mentions: 11
Published: about 3 years ago
10.1002/ece3.6407
Occupancy‐derived thermal affinities reflect known physiological thermal limits of marine speciesCited by: 8
Author(s): Thomas J. Webb, Aaron Lines, Leigh Michael Howarth
Software Mentions: 11
Published: almost 4 years ago
10.7717/peerj.10411
Data quantity is more important than its spatial bias for predictive species distribution modellingCited by: 10
Author(s): Willson Gaul, Dinara Sadykova, Hannah J. White, Lupe León‐Sánchez, Paul Caplat, Mark Emmerson, Jon Yearsley
Software Mentions: 11
Published: over 3 years ago
10.1371/journal.pone.0256694
Factors contributing to farm-level productivity and household income generation in coastal Bangladesh’s rice-based farming systemsCited by: 18
Author(s): Shah Al Emran, Timothy J. Krupnik, Sreejith Aravindakshan, Virender Kumar, Cameron M. Pittelkow
Software Mentions: 11
Published: over 2 years ago
10.1371/journal.pone.0258031
High site-fidelity in common bottlenose dolphins despite low salinity exposure and associated indicators of compromised healthCited by: 6
Author(s): Ryan Takeshita, Brian C. Balmer, Francesca Messina, Eric S. Zolman, Len Thomas, Randall S. Wells, Cynthia R. Smith, Teresa K. Rowles, Lori H. Schwacke
Software Mentions: 11
Published: over 2 years ago
10.1093/rheumatology/keaa615
Changes in the illness perceptions of patients with rheumatoid arthritis over the first year of methotrexate therapyCited by: 7
Author(s): James M Gwinnutt, Sam Norton, Kimme L Hyrich, Mark Lunt, Anne Barton, Lis Cordingley, Suzanne Verstappen, Rams co-investigators
Software Mentions: 11
Published: over 3 years ago
10.3389/fmicb.2019.02291
Reduced Gut Microbiome Diversity and Metabolome Differences in Rhinoceros Species at Risk for Iron Overload DisorderCited by: 25
Author(s): Terri L. Roth, Alexandra D. Switzer, Miki Watanabe-Chailland, Elisabeth M. Bik, David A. Relman, Lindsey E. Romick-Rosendale, Nicholas J. Ollberding
Software Mentions: 11
Published: over 4 years ago
10.3389/fphys.2020.00845
Dynamic Courtship Signals and Mate Preferences in Sepia plangonCited by: 5
Author(s): Alejandra López Galán, Wen-Sung Chung, N. Justin Marshall
Software Mentions: 11
Published: almost 4 years ago
10.1038/s41598-021-94656-w
A global assessment of surveillance methods for dominant malaria vectorsCited by: 4
Author(s): Bram van de Straat, Tanya L. Russell, Kyran M. Staunton, Marianne Sinka, Thomas R. Burkot
Software Mentions: 11
Published: almost 3 years ago
10.3390/ijms22147269
Genome-Wide Identification, Structure Characterization, and Expression Pattern Profiling of the Aquaporin Gene Family in Betula pendulaCited by: 3
Author(s): Jean-Stéphane Venisse, Eele Õunapuu-Pikas, Maxime Dupont, Aurélie Gousset-Dupont, Mouadh Saadaoui, Mohamed Faize, Song Chen, Su Chen, Gilles Pétel, Boris Fumanal, Patricia Roeckel‐Drevet, Arne Sellin, Philippe Label
Software Mentions: 11
Published: almost 3 years ago
10.3389/fgene.2021.640242
A Survey of Compound Heterozygous Variants in Pediatric Cancers and Structural Birth DefectsCited by: 7
Author(s): Dustin Miller, Stephen R. Piccolo
Software Mentions: 11
Published: about 3 years ago
10.3389/fimmu.2020.612784
Integrated Analysis of the ETS Family in Melanoma Reveals a Regulatory Role of ETV7 in the Immune MicroenvironmentCited by: 14
Author(s): Hui Qü, Hui Zhao, Xi Zhang, Yang Liu, Feng Li, Li-Yan Sun, Zewen Song
Software Mentions: 11
Published: over 3 years ago
10.12688/f1000research.11997.1
valr: Reproducible genome interval analysis in RCited by: 43
Author(s): Kent Riemondy, Ryan M. Sheridan, Austin E. Gillen, Yinni Yu, Christopher Bennett, Jay R. Hesselberth
Software Mentions: 10
Published: almost 7 years ago
10.1371/journal.pone.0238496
Lyme disease and relapsing fever in Mexico: An overview of human and wildlife infectionsCited by: 18
Author(s): Pablo Colunga‐Salas, Sokani Sánchez‐Montes, Patricia Volkow, Adriana Ruíz-Remigio, Ingeborg Becker
Software Mentions: 10
Published: over 3 years ago
10.1371/journal.pgen.1008126
Identification of novel genes involved in phosphate accumulation in Lotus japonicus through Genome Wide Association mapping of root system architecture and anion contentCited by: 14
Author(s): Marco Giovannetti, Christian Göschl, Christof Dietzen, Stig Uggerhøj Andersen, Stanislav Kopriva, Wolfgang Busch
Software Mentions: 10
Published: over 4 years ago
10.1155/2017/7457131
NFP: An R Package for Characterizing and Comparing of Annotated Biological NetworksCited by: 0
Author(s): Yang Cao, Wenjian Xu, Chao Niu, Xiaochen Bo, Fēi Li
Software Mentions: 10
Published: over 7 years ago
10.1371/journal.pone.0233242
Determining soil particle-size distribution from infrared spectra using machine learning predictions: Methodology and modelingCited by: 4
Author(s): Élizabeth Parent, Léon‐Étienne Parent, Léon E. Parent
Software Mentions: 10
Published: almost 3 years ago
10.1038/s41598-020-65160-4
Influence of climate variation on phenolic composition and antioxidant capacity of Medicago minima populationsCited by: 45
Author(s): Souhir Kabtni, Dorra Sdouga, Ines Bettaib Rebey, Mattew Save, Neïla Trifi-Farah, Marie‐Laure Fauconnier, Sonia Marghali
Software Mentions: 10
Published: about 4 years ago
10.3390/nu13061766
Multidimensional Approach to Assess Nutrition and Lifestyle in Breastfeeding Women during the First Month of LactationCited by: 9
Author(s): Andrea Gila-Díaz, Nuria Díaz-Rullo Alcántara, Gloria Herranz Carrillo, Pratibha Singh, Silvia M. Arribas, David Ramiro-Cortijo
Software Mentions: 10
Published: almost 3 years ago
10.5334/aogh.3278
Derivation of a Contextually-Appropriate COVID-19 Mortality Scale for Low-Resource SettingsCited by: 5
Author(s): Jennifer L Pigoga, Yasein Omer, Lee Wallis
Software Mentions: 10
Published: about 3 years ago
10.1371/journal.pone.0238160
Diagnostic and prognostic value of hematological and immunological markers in COVID-19 infection: A meta-analysis of 6320 patientsCited by: 138
Author(s): Rami M. Elshazli, Eman A. Toraih, Abdelaziz Elgaml, Mohammed El‐Mowafy, Mohamed El-Mesery, Mohamed N. Amin, Mohammad Hussein, Mary Killackey, Manal S. Fawzy, Emad Kandil
Software Mentions: 10
Published: over 3 years ago
10.1016/j.isci.2021.102768
Spatially resolved sampling for untargeted metabolomics: A new tool for salivomicsCited by: 4
Author(s): Alessio Ciurli, Maximiliam Liebl, Rico Derks, Jacques Neefjes, Martin Giera
Software Mentions: 10
Published: almost 3 years ago
10.1016/j.celrep.2020.107885
CD4+ T Cells Recognize Conserved Influenza A Epitopes through Shared Patterns of V-Gene Usage and Complementary Biochemical FeaturesCited by: 9
Author(s): Alexander Greenshields‐Watson, Meriem Attaf, Bruce J. MacLachlan, Thomas Whalley, Cristina Rius, Aaron Wall, Alun G. Lloyd, Hywel Hughes, Kathryn E. Strange, Georgina H Mason, Andrea J. A. Schauenburg, Sarah Hulin-Curtis, James Geary, Yuan Chen, Sarah N. Lauder, Kathryn Smart, Dhanasekaran Vijaykrishna, Miguel L. Grau, Mikhail Shugay, Robert Andrews, Garry Dolton, P.J. Rizkallah, Awen Gallimore, Andrew K. Sewell, Andrew Godkin, David K. Cole
Software Mentions: 10
Published: almost 4 years ago
10.3389/fgene.2021.682475
Genomic and Chemical Diversity of Commercially Available High-CBD Industrial Hemp AccessionsCited by: 10
Author(s): Matthew Johnson, Jason Wallace
Software Mentions: 10
Published: almost 3 years ago
10.1038/s41598-020-74909-w
Multi-strain volatile profiling of pathogenic and commensal cutaneous bacteriaCited by: 19
Author(s): Shane Fitzgerald, Emer Duffy, Linda Holland, Aoife Morrin
Software Mentions: 10
Published: over 3 years ago
10.3389/fmicb.2021.634503
Cottonseed Press Cake as a Potential Diet for Industrially Farmed Black Soldier Fly Larvae Triggers Adaptations of Their Bacterial and Fungal Gut MicrobiotaCited by: 26
Author(s): Dorothee Tegtmeier, Sabine Hurka, Patrick Klüber, Karina Brinkrolf, Philipp Heise, Andreas Vilcinskas
Software Mentions: 10
Published: about 3 years ago
10.3389/fmicb.2019.01702
Experimental Inoculation of Coral Recruits With Marine Bacteria Indicates Scope for Microbiome Manipulation in Acropora tenuis and Platygyra daedaleaCited by: 47
Author(s): Katarina Damjanovic, Madeleine Jh van Oppen, Patricia Menéndez, Linda L. Blackall
Software Mentions: 10
Published: almost 5 years ago
10.7554/eLife.36187
Transcriptional and epigenomic landscapes of CNS and non-CNS vascular endothelial cellsCited by: 167
Author(s): Mark F Sabbagh, Jacob S Heng, Chongyuan Luo, Rosa Castanon, Joseph R. Nery, Amir Rattner, Loyal A. Goff, Joseph R. Ecker, Jeremy Nathans
Software Mentions: 10
Published: over 5 years ago
10.1186/s12859-021-03967-2
tidyMicro: a pipeline for microbiome data analysis and visualization using the tidyverse in RCited by: 7
Author(s): Charlie M. Carpenter, Daniel N. Frank, Kayla Williamson, Jaron Arbet, Brandie D. Wagner, Katerina Kechris, Miranda Kroehl
Software Mentions: 10
Published: over 3 years ago
10.1371/journal.pone.0216723
A metadata approach to evaluate the state of ocean knowledge: Strengths, limitations, and application to MexicoCited by: 10
Author(s): Juliano Palacios‐Abrantes, Andrés M. Cisneros‐Montemayor, Miguel Á. Cisneros-Mata, Laura Rodríguez, Francisco Arreguı́n-Sánchez, Verónica Aguilar, Santiago Domínguez-Sánchez, Stuart Fulton, Raquel López-Sagástegui, Héctor Reyes‐Bonilla, Rocío Rivera-Campos, Silvia Salas, Nuno Simões, William W. L. Cheung
Software Mentions: 10
Published: almost 5 years ago
10.1002/ece3.4823
Animal movement tools (amt): R package for managing tracking data and conducting habitat selection analysesCited by: 274
Author(s): Johannes Signer, John Fieberg, Tal Avgar
Software Mentions: 10
Published: over 5 years ago
10.3390/jcm9051572
Eye-Catching Microbes—Polyphasic Analysis of the Microbiota on Microscope Oculars Verifies Their Role as FomitesCited by: 3
Author(s): Birgit Fritz, Karin Schäfer, Melanie März, Siegfried Wahl, Focke Ziemssen, Markus Egert
Software Mentions: 10
Published: almost 4 years ago
10.1186/s13071-020-04319-4
Retrospective analysis of feline intestinal parasites: trends in testing positivity by age, USA geographical region and reason for veterinary visitCited by: 7
Author(s): Sarah Sweet, Donald Szlosek, Donald J. McCrann, Michael J. Coyne, David Kincaid, Evan Hegarty
Software Mentions: 10
Published: over 3 years ago
10.3389/fmicb.2020.00037
FeGenie: A Comprehensive Tool for the Identification of Iron Genes and Iron Gene Neighborhoods in Genome and Metagenome AssembliesCited by: 164
Author(s): Arkadiy I. Garber, Kenneth H. Nealson, Akimitsu Okamoto, Sean M. McAllister, Clara S. Chan, Roman A. Barco, Nancy Merino
Software Mentions: 10
Published: over 4 years ago
10.1172/jci.insight.138970
Hypoxia acts as an environmental cue for the human tissue-resident memory T cell differentiation programCited by: 21
Author(s): Farah Hasan, Yulun Chiu, Rebecca Shaw, Junmei Wang, Cassian Yee
Software Mentions: 10
Published: almost 3 years ago
10.1186/s13046-019-1212-1
The kinase inhibitor SI113 induces autophagy and synergizes with quinacrine in hindering the growth of human glioblastoma multiforme cellsCited by: 23
Author(s): Silvia Matteoni, Claudia Abbruzzese, Paola Matarrese, Gabriele De Luca, Anna Maria Mileo, Stefania Miccadei, Silvia Schenone, Francesca Musumeci, Tobias Haas, Giovanni Sette, Carmine Maria Carapella, Rosario Amato, Nicola Perrotti, Michele Signore, Marco G. Paggi
Software Mentions: 10
Published: about 5 years ago
10.7554/eLife.43257
Beta-catenin signaling regulates barrier-specific gene expression in circumventricular organ and ocular vasculaturesCited by: 65
Author(s): Yanshu Wang, Mark F Sabbagh, Xiaowu Gu, Amir Rattner, John Williams, Jeremy Nathans
Software Mentions: 10
Published: about 5 years ago
10.1371/journal.pbio.3001053
Identification of 3′ UTR motifs required for mRNA localization to myelin sheaths in vivoCited by: 13
Author(s): Katie M. Yergert, Caleb A. Doll, Rebecca O’Rouke, Jacob H. Hines, Bruce Appel
Software Mentions: 10
Published: over 3 years ago
10.3389/fimmu.2021.722860
Transcriptional Changes in Regulatory T Cells From Patients With Autoimmune Polyendocrine Syndrome Type 1 Suggest Functional Impairment of Lipid Metabolism and Gut HomingCited by: 1
Author(s): A Berger, Eirik Bratland, Thea Sjøgren, Marte Heimli, Torgeir Tyssedal, Øyvind Bruserud, Stefan Johansson, Eystein S. Husebye, Bergithe E. Oftedal, Anette Susanne Bøe Wolff
Software Mentions: 10
Published: over 2 years ago
10.3390/microorganisms9081723
Fecal Supernatant from Adult with Autism Spectrum Disorder Alters Digestive Functions, Intestinal Epithelial Barrier, and Enteric Nervous SystemCited by: 7
Author(s): Jacques Gonzalès, Justine Marchix, Laetitia Aymeric, Catherine Le Berre‐Scoul, Johanna Zoppi, Philippe Bordron, Marie Burel, Laetitia Davidovic, J. L. Richard, Alexandru Gaman, Florian Lejuste, Julie Z. Brouillet, Françoise Le Vacon, Samuel Chaffron, Marion Leboyer, Hélène Boudin, Michel Neunlist
Software Mentions: 10
Published: almost 3 years ago
10.3390/diagnostics11071137
A Novel Combination of Blood Biomarkers and Clinical Stroke Scales Facilitates Detection of Large Vessel Occlusion Ischemic StrokesCited by: 6
Author(s): Edoardo Gaude, Barbara Nogueira, Marcos Ladreda Mochales, Sheila V. Graham, Sarah Smith, Lisa Shaw, Sara Graziadio, Gonzalo Ladreda Mochales, Philip Sloan, Joshua D. Bernstock, Shashank Shekhar, Toby Gropen, Chris Price
Software Mentions: 10
Published: almost 3 years ago
10.3390/jcm8091298
Comparison of Machine Learning Techniques for Prediction of Hospitalization in Heart Failure PatientsCited by: 32
Author(s): Giulia Lorenzoni, Stefano Santo Sabato, Corrado Lanera, Daniele Bottigliengo, Clara Minto, Honoria Ocagli, Paola De Paolis, Darío Gregori, Sabino Iliceto, Franco Pisanò
Software Mentions: 10
Published: over 4 years ago
10.1186/s40360-021-00505-x
Causal inference multiple imputation investigation of the impact of cannabinoids and other substances on ethnic differentials in US testicular cancer incidenceCited by: 26
Author(s): Albert Stuart Reece, Gary Kenneth Hulse
Software Mentions: 10
Published: almost 3 years ago
10.1371/journal.pone.0209331
Rethomics: An R framework to analyse high-throughput behavioural dataCited by: 66
Author(s): Quentin Geissmann, Luis García Rodríguez, Esteban J. Beckwith, Giorgio F. Gilestro
Software Mentions: 10
Published: over 5 years ago
10.3390/plants10091921
UHPLC-Orbitrap-MS Tentative Identification of 51 Oleraceins (Cyclo-Dopa Amides) in Portulaca oleracea L. Cluster Analysis and MS2 Filtering by Mass DifferenceCited by: 2
Author(s): Yulian Voynikov, Paraskev Nedialkov, Reneta Gevrenova, Dimitrina Zheleva‐Dimitrova, Vessela Balabanova, Иван Димитров
Software Mentions: 10
Published: over 2 years ago
10.7717/peerj.10871
Microbiomes of different ages in Rendzic Leptosols in the Crimean PeninsulaCited by: 2
Author(s): Anastasiia K. Kimeklis, Grigory Gladkov, Aleksei Zverev, Arina Kichko, Evgeny Andronov, E. I. Ergina, I. V. Kostenko
Software Mentions: 10
Published: over 3 years ago
10.1371/journal.pone.0218773
Demand and level of service inflation in Floating Catchment Area (FCA) methodsCited by: 34
Author(s): Antonio Páez, Christopher D. Higgins, Salvatore Vivona
Software Mentions: 10
Published: almost 5 years ago
10.1038/s41598-019-45491-7
The future of coffee and cocoa agroforestry in a warmer MesoamericaCited by: 58
Author(s): Kauê de Sousa, Maarten van Zonneveld, Milena Holmgren, Roeland Kindt, Jenny C. Ordóñez
Software Mentions: 10
Published: almost 5 years ago
10.1016/S2213-2600(21)00175-2
Changes in in-hospital mortality in the first wave of COVID-19: a multicentre prospective observational cohort study using the WHO Clinical Characterisation Protocol UKCited by: 71
Author(s): Annemarie B Docherty, Rachel Mulholland, Nazir Lone, Christopher P. Cheyne, Daniela De Angelis, Karla Díaz-Ordaz, Cara Donegan, Thomas M Drake, Jake Dunning, Sebastian Funk, Marta García‐Fiñana, Michelle Girvan, Hayley Hardwick, Janet Harrison, Antonia Ho, David Hughes, Ruth H. Keogh, Peter Kirwan, Gary Leeming, J. Van-Tam, Riinu Pius, Clark D Russell, Rebecca G. Spencer, Brian D. M. Tom, Lance Turtle, Peter Openshaw, J Kenneth Baillie, Ewen M Harrison, Malcolm G Semple
Software Mentions: 10
Published: almost 3 years ago
10.1007/s11250-021-02620-7
Risk factors associated with Ctenocephalides felis flea infestation of peri-urban goats: a neglected parasite in an under-appreciated hostCited by: 4
Author(s): Julia Rose Dahm, Jordana Burdon Bailey, Robert F. Kelly, Patrick Chikungwa, Julius L.C. Chulu, Lívio Martins Costa, Emily June Freeman, Dagmar Mayer, Stella Mazeri, Neil Sargison
Software Mentions: 10
Published: about 3 years ago
10.1186/s12913-021-06362-y
Variation in restraint use between hospitals: a multilevel analysis of multicentre prevalence measurements in Switzerland and AustriaCited by: 9
Author(s): Silvia Thomann, Sabine Hahn, Silvia Bauer, Dirk Richter, Sandra Zwakhalen
Software Mentions: 9
Published: about 3 years ago
10.1371/journal.pone.0236856
The macroecology of the COVID-19 pandemic in the AnthropoceneCited by: 32
Author(s): Piotr Skórka, Beata Grzywacz, Dawid Moroń, Magdalena Lenda
Software Mentions: 9
Published: almost 4 years ago
10.3390/pathogens10091221
Prevalence of Vector-Borne Pathogens in Reproductive and Non-Reproductive Tissue Samples from Free-Roaming Domestic Cats in the South Atlantic USACited by: 5
Author(s): Charlotte Manvell, Kelli Ferris, Ricardo G. Maggi, Edward B. Breitschwerdt, Erin Lashnits
Software Mentions: 9
Published: over 2 years ago
10.1016/j.celrep.2020.108308
Developmental Gene Expression Differences between Humans and Mammalian ModelsCited by: 34
Author(s): Margarida Cardoso-Moreira, Ioannis Sarropoulos, Britta Velten, Matthew Mort, David Neil Cooper, Wolfgang Huber, Henrik Kaessmann
Software Mentions: 9
Published: over 3 years ago
10.1038/s41419-019-1775-y
A new bioavailable fenretinide formulation with antiproliferative, antimetabolic, and cytotoxic effects on solid tumorsCited by: 34
Author(s): Isabella Orienti, Federica Francescangeli, Maria Laura De Angelis, Katia Fecchi, Lucilla Bongiorno-Borbone, Michele Signore, Angelo Peschiaroli, Alessandra Boe, Alessandro Bruselles, Angelita Costantino, Adriana Eramo, Valentina Salvati, Giovanni Sette, Paola Contavalli, Lello Zolla, Toshihiko Oki, Toshio Kitamura, Massimo Spada, Alessandro Giuliani, Marta Baiocchi, Filippo La Torre, Gerry Melino, Marco Tartaglia, Ruggero De Maria, Ann Zeuner
Software Mentions: 9
Published: almost 5 years ago
10.1038/s41598-020-74647-z
Passive acoustic listening stations (PALS) show rapid onset of ecological effects of harmful algal blooms in real timeCited by: 9
Author(s): Athena M. Rycyk, Reny B. Tyson Moore, Randall S. Wells, Katherine McHugh, Elizabeth J. Berens McCabe, David A. Mann
Software Mentions: 9
Published: over 3 years ago
10.1038/s41598-019-53903-x
Proteome characterization of used nesting material and potential protein sources from group housed male mice, Mus musculusCited by: 16
Author(s): Amanda J. Barabas, Uma K. Aryal, Brianna N. Gaskill
Software Mentions: 9
Published: over 4 years ago
10.1371/journal.pgen.1009259
Loss of endocytosis-associated RabGEF1 causes aberrant morphogenesis and altered autophagy in photoreceptors leading to retinal degenerationCited by: 9
Author(s): Passley Hargrove-Grimes, Anupam Mondal, Jessica Gumerson, Jacob Nellissery, Angel Aponte, Linn Gieser, Haohua Qian, Robert N Fariss, Juan S. Bonifacino, Tiansen Li, Anand Swaroop
Software Mentions: 9
Published: over 3 years ago