Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.12688/f1000research.11997.1

https://doi.org/10.12688/f1000research.11997.1

valr: Reproducible genome interval analysis in R

Cited by: 43
Author(s): Kent Riemondy, Ryan M. Sheridan, Austin E. Gillen, Yinni Yu, Christopher Bennett, Jay R. Hesselberth
Published: about 7 years ago

Software Mentions 10

bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
bioconductor: IRanges
Foundation of integer range manipulation in Bioconductor
Papers that mentioned: 62
cran: bedr
Genomic Region Processing using Tools Such as 'BEDTools', 'BEDOPS' and 'Tabix'
Papers that mentioned: 6
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: Rcpp
Seamless R and C++ Integration
Papers that mentioned: 152
cran: tidyverse
Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023
cran: valr
Genome Interval Arithmetic
Papers that mentioned: 4
pypi: bed
A very simple command line Browser Extension Downloader
Papers that mentioned: 8
pypi: pybedtools
Wrapper around BEDTools for bioinformatics work
Papers that mentioned: 48
pypi: replicate
Python client for Replicate
Papers that mentioned: 1