Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: bedr
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/bedr
Genomic Region Processing using Tools Such as 'BEDTools',
'BEDOPS' and 'Tabix'
7 versions
Latest release: over 5 years ago
2 dependent packages
738 downloads last month
Papers Mentioning bedr 6
10.12688/f1000research.11997.1
valr: Reproducible genome interval analysis in RCited by: 43
Author(s): Kent Riemondy, Ryan M. Sheridan, Austin E. Gillen, Yinni Yu, Christopher Bennett, Jay R. Hesselberth
Software Mentions: 10
Published: over 7 years ago
10.1186/s13029-016-0059-5
A bedr way of genomic interval processingCited by: 19
Author(s): Syed Haider, Daryl Waggott, Emilie Lalonde, Clement Fung, Fei‐Fei Liu, Paul C. Boutros
Software Mentions: 9
Published: almost 8 years ago
10.3389/fgene.2021.745284
Genetic Variations and Differential DNA Methylation to Face Contrasted Climates in Small Ruminants: An Analysis on Traditionally-Managed Sheep and GoatsCited by: 2
Author(s): Laure Denoyelle, Pierre de Villemereuil, Frédéric Boyer, Meidhi Khelifi, Clément Gaffet, Florian J. Alberto, Badr Benjelloun, François Pompanon
Software Mentions: 6
Published: about 3 years ago
10.1038/s41598-019-44254-8
Honey bee predisposition of resistance to ubiquitous mite infestationsCited by: 17
Author(s): Bart J. G. Broeckx, Lina De Smet, T. Blacquière, Kevin Maebe, Mikalai Khalenkow, Mario Van Poucke, Bjørn Dahle, Peter Neumann, Kim B. Nguyen, Guy Smagghe, Dieter Deforce, Filip Van Nieuwerburgh, Luc Peelman, Dirk C. de Graaf
Software Mentions: 5
Published: over 5 years ago
10.12688/wellcomeopenres.16286.2
A global analysis of low-complexity regions in the Trypanosoma brucei proteome reveals enrichment in the C-terminus of nucleic acid binding proteins providing potential targets of phosphorylationCited by: 2
Author(s): Mathieu Cayla, Keith R. Matthews, Alasdair Ivens
Software Mentions: 4
Published: almost 4 years ago
10.1186/s13072-019-0304-7
Genome-wide allele-specific methylation is enriched at gene regulatory regions in a multi-generation pedigree from the Norfolk Island isolateCited by: 9
Author(s): Miles C. Benton, Rodney Arthur Lea, Donia Macartney-Coxson, Heidi G. Sutherland, Nicole White, Kerrie Mengersen, Larisa M. Haupt, Lyn R. Griffiths
Software Mentions: 2
Published: about 5 years ago