Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: bedr

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/bedr

Genomic Region Processing using Tools Such as 'BEDTools', 'BEDOPS' and 'Tabix'
7 versions
Latest release: over 5 years ago
2 dependent packages
738 downloads last month

Papers Mentioning bedr 6

10.12688/f1000research.11997.1

valr: Reproducible genome interval analysis in R
Cited by: 43
Author(s): Kent Riemondy, Ryan M. Sheridan, Austin E. Gillen, Yinni Yu, Christopher Bennett, Jay R. Hesselberth
Software Mentions: 10
Published: over 7 years ago

10.1186/s13029-016-0059-5

A bedr way of genomic interval processing
Cited by: 19
Author(s): Syed Haider, Daryl Waggott, Emilie Lalonde, Clement Fung, Fei‐Fei Liu, Paul C. Boutros
Software Mentions: 9
Published: almost 8 years ago

10.3389/fgene.2021.745284

Genetic Variations and Differential DNA Methylation to Face Contrasted Climates in Small Ruminants: An Analysis on Traditionally-Managed Sheep and Goats
Cited by: 2
Author(s): Laure Denoyelle, Pierre de Villemereuil, Frédéric Boyer, Meidhi Khelifi, Clément Gaffet, Florian J. Alberto, Badr Benjelloun, François Pompanon
Software Mentions: 6
Published: about 3 years ago

10.1038/s41598-019-44254-8

Honey bee predisposition of resistance to ubiquitous mite infestations
Cited by: 17
Author(s): Bart J. G. Broeckx, Lina De Smet, T. Blacquière, Kevin Maebe, Mikalai Khalenkow, Mario Van Poucke, Bjørn Dahle, Peter Neumann, Kim B. Nguyen, Guy Smagghe, Dieter Deforce, Filip Van Nieuwerburgh, Luc Peelman, Dirk C. de Graaf
Software Mentions: 5
Published: over 5 years ago

10.12688/wellcomeopenres.16286.2

A global analysis of low-complexity regions in the Trypanosoma brucei proteome reveals enrichment in the C-terminus of nucleic acid binding proteins providing potential targets of phosphorylation
Cited by: 2
Author(s): Mathieu Cayla, Keith R. Matthews, Alasdair Ivens
Software Mentions: 4
Published: about 4 years ago

10.1186/s13072-019-0304-7

Genome-wide allele-specific methylation is enriched at gene regulatory regions in a multi-generation pedigree from the Norfolk Island isolate
Cited by: 9
Author(s): Miles C. Benton, Rodney Arthur Lea, Donia Macartney-Coxson, Heidi G. Sutherland, Nicole White, Kerrie Mengersen, Larisa M. Haupt, Lyn R. Griffiths
Software Mentions: 2
Published: about 5 years ago