Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13029-016-0059-5

https://doi.org/10.1186/s13029-016-0059-5

A bedr way of genomic interval processing

Cited by: 19
Author(s): Syed Haider, Daryl Waggott, Emilie Lalonde, Clement Fung, Fei‐Fei Liu, Paul C. Boutros
Published: almost 8 years ago

Software Mentions 9

bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
bioconductor: Gviz
Plotting data and annotation information along genomic coordinates
Papers that mentioned: 134
bioconductor: IRanges
Foundation of integer range manipulation in Bioconductor
Papers that mentioned: 62
cran: BED
Biological Entity Dictionary (BED)
Papers that mentioned: 49
cran: bedr
Genomic Region Processing using Tools Such as 'BEDTools', 'BEDOPS' and 'Tabix'
Papers that mentioned: 6
cran: unix
POSIX System Utilities
Papers that mentioned: 27
cran: UpSetR
A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets
Papers that mentioned: 319
pypi: linux

Papers that mentioned: 450
pypi: unix
Manage Unix-like systems.
Papers that mentioned: 27