Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/gigascience/giab011

https://doi.org/10.1093/gigascience/giab011

The case for using mapped exonic non-duplicate reads when reporting RNA-sequencing depth: examples from pediatric cancer datasets

Cited by: 2
Author(s): Holly C. Beale, Jacquelyn Roger, Matthew Cattle, Liam T. McKay, Drew Thompson, Katrina Learned, A. Geoffrey Lyle, Ellen Kephart, R. Currie, Du Linh Lam, Lauren Sanders, Jacob Pfeil, John Vivian, Isabel Bjork, Sofie R. Salama, David Haussler, Olena M. Vaske
Published: over 3 years ago

Software Mentions 12

cran: corrr
Correlations in R
Papers that mentioned: 22
cran: cowplot
Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Papers that mentioned: 298
cran: janitor
Simple Tools for Examining and Cleaning Dirty Data
Papers that mentioned: 11
cran: kableExtra
Construct Complex Table with 'kable' and Pipe Syntax
Papers that mentioned: 21
cran: knitr
A General-Purpose Package for Dynamic Report Generation in R
Papers that mentioned: 157
cran: pander
An R 'Pandoc' Writer
Papers that mentioned: 11
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490
cran: snakecase
Convert Strings into any Case
Papers that mentioned: 2
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
cran: tidyverse
Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023
pypi: RSeQC
RNA-seq QC Package
Papers that mentioned: 366
pypi: snakecase
Convert camelCase to snake_case
Papers that mentioned: 2