10.3390/microorganisms9020378
Differences in the Concentration of the Fecal Neurotransmitters GABA and Glutamate Are Associated with Microbial Composition among Healthy Human SubjectsCited by: 18
Author(s): Hend Altaib, Kohei Nakamura, Mayuko Abe, Yassien Badr, Emiko Yanase, Izumi Nomura, Tomohiko Suzuki
Software Mentions: 8
Published: over 5 years ago
10.7717/peerj.5179
<i>AnnotationBustR</i>: an R package to extract subsequences from GenBank annotationsCited by: 9
Author(s): Samuel R. Borstein, Brian C. O’Meara
Software Mentions: 8
Published: almost 8 years ago
10.1002/ctm2.20
Nomograms for predicting specific distant metastatic sites and overall survival of colorectal cancer patients: A large population‐based real‐world studyCited by: 26
Author(s): Shaobo Mo, Xin Cai, Zheng Zhou, Yaqi Li, Xiang Hu, Xiaolong Ma, Long Zhang, Sanjun Cai, Junjie Peng
Software Mentions: 8
Published: over 6 years ago
10.1093/bioinformatics/btx738
PlanNET: homology-based predicted interactome for multiple planarian transcriptomesCited by: 17
Author(s): Sergio Castillo-Lara, Josep F. Abril
Software Mentions: 8
Published: over 8 years ago
10.18632/aging.202405
Construction and analysis of a joint diagnosis model of random forest and artificial neural network for heart failureCited by: 25
Author(s): Yuqing Tian, Jiefu Yang, Ming Lan, Tong Zou
Software Mentions: 8
Published: over 5 years ago
10.1186/s12864-021-07760-6
UniBind: maps of high-confidence direct TF-DNA interactions across nine speciesCited by: 31
Author(s): Rafael Riudavets Puig, Paul Boddie, Aziz Khan, Jaime A Castro-Mondragón, Anthony Mathelier
Software Mentions: 8
Published: almost 5 years ago
10.3389/fonc.2019.01243
Identification of Subtype-Specific Three-Gene Signature for Prognostic Prediction in Diffuse Type Gastric CancerCited by: 12
Author(s): Bowen Bao, Chunlei Zheng, Bowen Yang, Yue Jin, Kezuo Hou, Zhi Li, Xueying Zheng, Shitong Yu, Xiaojie Zhang, Yibo Fan, Xiujuan Qu, Yunpeng Liu, Xiaofang Che
Software Mentions: 8
Published: over 6 years ago
10.3389/fmicb.2018.00570
SIPSim: A Modeling Toolkit to Predict Accuracy and Aid Design of DNA-SIP ExperimentsCited by: 37
Author(s): Nicholas D. Youngblut, Samuel E. Barnett, Daniel H. Buckley
Software Mentions: 8
Published: about 8 years ago
10.3389/fmicb.2016.00517
Spatio-Temporal Interdependence of Bacteria and Phytoplankton during a Baltic Sea Spring BloomCited by: 57
Author(s): Carina Bunse, Mireia Bertos‐Fortis, Ingrid Sassenhagen, Sirje Sildever, Conny Sjöqvist, Anna Godhe, Susanna Gross, Anke Kremp, Inga Lips, Nina Lundholm, Karin Rengefors, Josefin Sefbom, Jarone Pinhassi, Catherine Legrand
Software Mentions: 8
Published: about 10 years ago
10.1186/1746-6148-10-71
EpiContactTrace: an R-package for contact tracing during livestock disease outbreaks and for risk-based surveillanceCited by: 45
Author(s): Maria Nöremark, Stefan Widgrén
Software Mentions: 8
Published: over 12 years ago
10.3389/fmolb.2021.657087
N6-Methyladenosine RNA Methylation Regulator-Related Alternative Splicing (AS) Gene Signature Predicts Non–Small Cell Lung Cancer PrognosisCited by: 16
Author(s): Zhenyu Zhao, Qidong Cai, Peng-Fei Zhang, Boxue He, Ping Xiong, Guangxu Tu, Weilin Peng, Li Wang, Fenglei Yu, Xiang Wang
Software Mentions: 8
Published: about 5 years ago
10.3389/fmolb.2021.655126
Silencing of the TRIM58 Gene by Aberrant Promoter Methylation is Associated with a Poor Patient Outcome and Promotes Cell Proliferation and Migration in Clear Cell Renal Cell CarcinomaCited by: 6
Author(s): Ying Gan, Congcong Cao, Aolin Li, Haifeng Song, Guanyu Kuang, Binglei Ma, Quan Zhang, Qian Zhang
Software Mentions: 8
Published: over 5 years ago
10.1186/1471-2105-11-450
Filtering, FDR and powerCited by: 43
Author(s): Maarten van Iterson, Judith M. Boer, Renée X. de Menezes
Software Mentions: 8
Published: almost 16 years ago
10.3390/v11060492
Culex torrentium: A Potent Vector for the Transmission of West Nile Virus in Central EuropeCited by: 33
Author(s): Stéphanie Jansen, Anna Heitmann, Renke Lühken, Mayke Leggewie, Michelle Helms, Marlis Badusche, Giada Rossini, Jonas Schmidt‐Chanasit, Egbert Tannich
Software Mentions: 8
Published: about 7 years ago
10.1038/s42003-021-02146-6
NEBULA is a fast negative binomial mixed model for differential or co-expression analysis of large-scale multi-subject single-cell dataCited by: 38
Author(s): Liyun He, José Dávila-Velderrain, Tomokazu Sumida, David A. Hafler, M Kellis, Alexander M. Kulminski
Software Mentions: 8
Published: about 5 years ago
10.1002/ece3.5283
Circadian rhythms enable efficient resource selection in a human‐modified landscapeCited by: 6
Author(s): Manuela Fischer, Julian Di Stefano, Pierre Gras, Stephanie Kramer‐Schadt, Duncan R. Sutherland, Geoff Coulson, Milena Stillfried
Software Mentions: 8
Published: about 7 years ago
10.1534/g3.119.400126
An R Package for Bayesian Analysis of Multi-environment and Multi-trait Multi-environment Data for Genome-Based PredictionCited by: 38
Author(s): Osval A. Montesinos-L֯ópez, Abelardo Montesinos‐López, Francisco Javier Luna-Vázquez, Fernando H. Toledo, Paulino Pérez‐Rodríguez, Morten Lillemo, J. Crossa
Software Mentions: 8
Published: about 7 years ago
10.1038/s41598-020-59062-8
Sting nematodes modify metabolomic profiles of host plantsCited by: 4
Author(s): Denis S. Willett, Camila C. Filgueiras, Nicole Benda, Jing Zhang, Kevin E. Kenworthy
Software Mentions: 8
Published: over 6 years ago
10.1371/journal.pone.0229689
Population dynamics and biological feasibility of sustainable harvesting as a conservation strategy for tropical and temperate freshwater turtlesCited by: 11
Author(s): Angga Rachmansah, D. Ryan Norris, James P. Gibbs
Software Mentions: 8
Published: over 6 years ago
10.1101/2020.11.25.20235150
T cell and antibody functional correlates of severe COVID-19Cited by: 8
Author(s): Krystle K. Q. Yu, Stephanie Fischinger, Malisa T. Smith, Caroline Atyeo, Deniz Cizmeci, Caitlin R Wolf, Erik D. Layton, Jennifer Logue, Melissa S. Aguilar, Kiel Shuey, Carolin Loos, Jingyou Yu, Nicholas Franko, Robert Y. Choi, Anna Wald, Dan H. Barouch, David M. Koelle, Douglas A. Lauffenburger, Helen Y. Chu, Galit Alter, Chetan Seshadri
Software Mentions: 8
Published: over 5 years ago
10.3390/ijms21103591
Examining Short-Term Responses to a Long-Term Problem: RNA-Seq Analyses of Iron Deficiency Chlorosis Tolerant SoybeanCited by: 8
Author(s): Adrienne N. Moran Lauter, Lindsay Rutter, Dianne Cook, Jamie A. O’Rourke, Michelle A. Graham
Software Mentions: 8
Published: about 6 years ago
10.1038/s41598-021-92913-6
Ganoderma lucidum promotes sleep through a gut microbiota-dependent and serotonin-involved pathway in miceCited by: 14
Author(s): Chunyan Yao, Zhiyuan Wang, Huiyong Jiang, Yan Ren, Qin Huang, Yin Wang, Hui Xie, Ying Zou, Ying Yu, Longxian Lv
Software Mentions: 8
Published: almost 5 years ago
10.3390/biology8040088
Reproductive Biology and Ecology of the Green Mussel Perna viridis: A Multidisciplinary ApproachCited by: 8
Author(s): Md. Asaduzzaman, Aysha Rahi Noor, Md. Moshiur Rahman, Shirin Akter, Nayeema Ferdausy Hoque, Abrar Shakil, Abdul Wahab
Software Mentions: 8
Published: over 6 years ago
10.1038/s41598-018-36696-3
Immune cell characteristics and cytokine responses in adult HIV-negative tuberculous meningitis: an observational cohort studyCited by: 23
Author(s): Arjan van Laarhoven, Sofiati Dian, Suzanne van Dorp, Feby Purnama, Valerie A C M Koeken, Emira Diandini, Fitria Utami, Resvi Livia, Lika Apriani, Edwin Ardiansyah, Rob ter Horst, Mihai G. Netea, Tri Hanggono Achmad, Philip C. Hill, Rovina Ruslami, Bachti Alisjahbana, James E. Ussher, Agnes Rengga Indrati, Ayesha Verrall, Ahmad Rizal Ganiem, Reinout van Crevel
Software Mentions: 8
Published: over 7 years ago
10.1038/s41598-020-80840-x
Distinct bacterial community structure and composition along different cowpea producing ecoregions in Northeastern BrazilCited by: 7
Author(s): Luciana de Sousa Lopes, Lucas William Mendes, Jadson Emanuel Lopes Antunes, Louise Melo de Souza Oliveira, Vânia Maria Maciel Melo, Arthur Prudêncio de Araújo Pereira, Antônio Félix da Costa, José de Paula Oliveira, Cosme Rafael Martínez, Márcia do Vale Barreto Figueiredo, Ademir Sérgio Ferreira de Araújo
Software Mentions: 8
Published: over 5 years ago
10.7717/peerj.8522
Detection and characterization of microRNA expression profiling and its target genes in response to canine parvovirus in Crandell Reese Feline Kidney cellsCited by: 8
Author(s): Phongsakorn Chuammitri, Soulasack Vannamahaxay, Benjaporn Sornpet, Kidsadagon Pringproa, Prapas Patchanee
Software Mentions: 8
Published: over 6 years ago
10.3389/fmicb.2015.01269
Prokaryotes in Subsoil—Evidence for a Strong Spatial Separation of Different Phyla by Analysing Co-occurrence NetworksCited by: 39
Author(s): Marie Uksa, Michael Schloter, David Endesfelder, Susanne Kublik, Marion Engel, Timo Kautz, Ulrich Köpke, Doreen Fischer
Software Mentions: 8
Published: over 10 years ago
10.18632/oncotarget.24506
Systematic characterization of autophagy-related genes during the adipocyte differentiation using public-access dataCited by: 13
Author(s): Mahmoud Ahmed, Huynh Quoc Nguyen, Jin Seok Hwang, Sahib Zada, Trang Huyen Lai, Sang Soo Kang, Deok Ryong Kim
Software Mentions: 8
Published: over 8 years ago
10.1371/journal.pgen.1009386
Genomic rearrangements generate hypervariable mini-chromosomes in host-specific isolates of the blast fungusCited by: 39
Author(s): Thorsten Langner, Adeline Harant, Luis B. Gómez-Luciano, Ram-Krishna Shrestha, Angus Malmgren, Sergio M. Latorre, Hernán A. Burbano, Joe Win, Sophien Kamoun
Software Mentions: 8
Published: over 5 years ago
10.1371/journal.pone.0231144
Quantitative phenotyping of shell suture strength in walnut (Juglans regia L.) enhances precision for detection of QTL and genome-wide association mappingCited by: 19
Author(s): Gina M. Sideli, Annarita Marrano, Sara Montanari, Charles A. Leslie, Brian Allen, Hao Cheng, Patrick J. Brown, David B. Neale
Software Mentions: 8
Published: about 6 years ago
10.1093/toxsci/kfaa058
Blinded, Multicenter Evaluation of Drug-induced Changes in Contractility Using Human-induced Pluripotent Stem Cell-derived CardiomyocytesCited by: 44
Author(s): Umber Saleem, Berend J. van Meer, Puspita A Katili, Nurul A N Mohd Yusof, Ingra Mannhardt, Ana Krotenberg Garcia, Leon G.J. Tertoolen, Tessa de Korte, Maria L. H. Vlaming, Karen McGlynn, Jessica Nebel, Anthony Bahinski, Kate Harris, Eric I. Rossman, Xiaoping Xu, Francis L. Burton, Godfrey L. Smith, Peter Clements, Christine L. Mummery, Thomas Eschenhagen, Arne Hansen, Chris Denning
Software Mentions: 8
Published: about 6 years ago
10.1186/s12967-021-03065-0
Comprehensive analysis of EMT-related genes and lncRNAs in the prognosis, immunity, and drug treatment of colorectal cancerCited by: 28
Author(s): Yang Yang, Mingyang Feng, Liangliang Bai, Wei‐Ting Liao, Kaiyu Zhou, Mengxi Zhang, Qiuji Wu, Feng Wen, Wenhua Lei, Pengfei Zhang, Nan Zhang, Jiaxing Huang, Li Qiu
Software Mentions: 8
Published: almost 5 years ago
10.1038/s41598-017-06929-y
A systems approach to a spatio-temporal understanding of the drought stress response in maizeCited by: 64
Author(s): Zhenyan Miao, Zhaoxue Han, Ting Zhang, Siyuan Chen, Chuang Ma
Software Mentions: 8
Published: almost 9 years ago
10.1002/acn3.51441
Gut microbiome is associated with multiple sclerosis activity in childrenCited by: 18
Author(s): Mary Horton, Kathryn McCauley, Douglas Fadrosh, Kei E. Fujimura, Jennifer Graves, Jayne Ness, Yolanda Wheeler, Mark Gorman, Leslie Benson, Bianca Weinstock‐Guttman, Amy Waldman, Moses Rodriguez, Jan‐Mendelt Tillema, Lauren Krupp, Anita Belman, Soe Mar, Mary Rensel, Tanuja Chitnis, T. Charles Casper, John Rose, Janace Hart, Xiaorong Shao, Helen Tremlett, Susan V. Lynch, Lisa F. Barcellos, Emmanuelle Waubant
Software Mentions: 8
Published: almost 5 years ago
10.3390/cancers12102802
Comparison of the Tree-Based Machine Learning Algorithms to Cox Regression in Predicting the Survival of Oral and Pharyngeal Cancers: Analyses Based on SEER DatabaseCited by: 31
Author(s): Mi Du, Dandara Haag, John Lynch, Murthy Mittinty
Software Mentions: 8
Published: over 5 years ago
10.1098/rstb.2020.0362
Land-use change and rodent-borne diseases: hazards on the shared socioeconomic pathwaysCited by: 13
Author(s): Gabriel E. García‐Peña, André V. Rubio, Hugo Mendoza, Miguel Fernández, Matthew T. Milholland, A. Alonso Aguirre, Gerardo Suzán, Carlos Zambrana‐Torrelio
Software Mentions: 8
Published: almost 5 years ago
10.1038/s41598-020-76256-2
Selection of sponge-associated bacteria with high potential for the production of antibacterial compoundsCited by: 11
Author(s): Riyanti, Walter Balansa, Yang Liu, Abha Sharma, Sanja Mihajlović, Christoph Hartwig, Benedikt Leis, Frets Jonas Rieuwpassa, Frans Gruber Ijong, Heike Wägele, Gabriele M. König, Till F. Schäberle
Software Mentions: 8
Published: over 5 years ago
10.3389/fimmu.2020.558757
Molecular and Clinical Characterization of PD-1 in Breast Cancer Using Large-Scale Transcriptome DataCited by: 16
Author(s): Qiang Liu, Ran Cheng, Xiangyi Kong, Zhongzhao Wang, Yi Fang, Jing Wang
Software Mentions: 8
Published: over 5 years ago
10.1007/s10278-017-0037-8
SimpleITK Image-Analysis Notebooks: a Collaborative Environment for Education and Reproducible ResearchCited by: 239
Author(s): Ziv Yaniv, Bradley Lowekamp, Hans J. Johnson, Richard Beare
Software Mentions: 8
Published: over 8 years ago
10.3390/microorganisms9061273
Inoculation with Mycorrhizal Fungi and Irrigation Management Shape the Bacterial and Fungal Communities and Networks in Vineyard SoilsCited by: 8
Author(s): Nazareth Torres, Runze Yu, S. Kaan Kurtural
Software Mentions: 8
Published: about 5 years ago
10.1186/s12864-015-2319-1
Global expression differences and tissue specific expression differences in rice evolution result in two contrasting types of differentially expressed genesCited by: 3
Author(s): Youko Horiuchi, Yoshiaki Harushima, Hironori Fujisawa, Takako Mochizuki, Masahiro Fujita, Hajime Ohyanagi, Nori Kurata
Software Mentions: 8
Published: over 10 years ago
10.1371/journal.pcbi.1007696
The SONATA data format for efficient description of large-scale network modelsCited by: 26
Author(s): Kael Dai, Juan Hernando, Yazan N. Billeh, Sergey L. Gratiy, Judit Planas, Andrew P. Davison, Salvador Dura‐Bernal, Padraig Gleeson, Adrien Devresse, Benjamin Dichter, Michael Gevaert, James G. King, Werner A. H. Van Geit, Arseny V. Povolotsky, Eilif Müller, Jean-Denis Courcol, Anton Arkhipov
Software Mentions: 8
Published: over 6 years ago
10.1002/1878-0261.12381
A pan‐cancer atlas of cancer hallmark‐associated candidate driver lnc <scp>RNA</scp> sCited by: 19
Author(s): Yulan Deng, Shangyi Luo, Xinxin Zhang, Chaoxia Zou, Huating Yuan, Gaoming Liao, Liwen Xu, Chunyu Deng, Yujia Lan, Tingting Zhao, Xu Gao, Yun Xiao, Xia Li
Software Mentions: 8
Published: over 7 years ago
10.3389/fonc.2021.625007
Comprehensive Analysis of the Functions and Prognostic Value of RNA-Binding Proteins in Thyroid CancerCited by: 7
Author(s): Yue Ma, Shi Yin, Xiaofeng Liu, Jing Hu, Ning Cai, Xiao-bei Zhang, Fu Li, Xuchen Cao, Yue Yu
Software Mentions: 8
Published: over 5 years ago
10.3390/cancers13071561
NF2 and Canonical Hippo-YAP Pathway Define Distinct Tumor Subsets Characterized by Different Immune Deficiency and Treatment Implications in Human Pleural MesotheliomaCited by: 19
Author(s): Haitang Yang, Sean Hall, Beibei Sun, Liang Zhao, Yanyun Gao, Ralph A. Schmid, Swee T. Tan, Ren‐Wang Peng, Feng Yao
Software Mentions: 8
Published: about 5 years ago
10.3390/ijerph17113854
Nontuberculous Mycobacterial Disease and Molybdenum in Colorado WatershedsCited by: 16
Author(s): Ettie M. Lipner, Joshua P. French, Carleton R. Bern, Katherine Walton-Day, D. Knox, Michael Strong, D. Rebecca Prevots, James Crooks
Software Mentions: 8
Published: about 6 years ago
10.1371/journal.pone.0062127
Home Range Utilisation and Long-Range Movement of Estuarine Crocodiles during the Breeding and Nesting SeasonCited by: 59
Author(s): Hamish A. Campbell, Ross G. Dwyer, Terri R. Irwin, Craig E. Franklin
Software Mentions: 8
Published: about 13 years ago
10.1186/s12859-016-1003-z
Implementation of a methodology for determining elastic properties of lipid assemblies from molecular dynamics simulationsCited by: 26
Author(s): Niklaus Johner, Daniel Harries, George Khelashvili
Software Mentions: 8
Published: about 10 years ago
10.1128/mSphere.00488-17
Novel ITS1 Fungal Primers for Characterization of the MycobiomeCited by: 68
Author(s): Mykhaylo Usyk, Christine P. Zolnik, Hitesh D. Patel, Michael H. Levi, Robert D. Burk
Software Mentions: 8
Published: over 8 years ago
10.1371/journal.pone.0116356
Effects of Hierarchical Roost Removal on Northern Long-Eared Bat (Myotis septentrionalis) Maternity ColoniesCited by: 26
Author(s): Alexander Silvis, W. Mark Ford, Eric R. Britzke
Software Mentions: 8
Published: over 11 years ago
10.1038/s41598-019-45193-0
Description of strongly heat-inducible heat shock protein 70 transcripts from Baikal endemic amphipodsCited by: 7
Author(s): Polina Drozdova, Daria Bedulina, Ekaterina Madyarova, Lorena Rivarola-Duarte, S Schreiber, Peter F. Stadler, Till Luckenbach, Maxim A. Timofeyev
Software Mentions: 8
Published: about 7 years ago
10.1186/s12936-018-2627-4
Diagnostic performance of salivary urea nitrogen dipstick to detect and monitor acute kidney disease in patients with malariaCited by: 11
Author(s): Viviane Calice‐Silva, Euclides Nenga Manuel Sacomboio, Jochen G. Raimann, Rhys Evans, Cruz S. Sebastião, Adelino Tchilanda Tchivango, Peter Kotanko, Nathan W. Levin, Roberto Pecoits‐Filho
Software Mentions: 8
Published: over 7 years ago
10.1186/s40462-020-0191-3
Active acoustic telemetry tracking and tri-axial accelerometers reveal fine-scale movement strategies of a non-obligate ram ventilatorCited by: 17
Author(s): Emily N. Meese, Christopher G. Lowe
Software Mentions: 8
Published: over 6 years ago
10.7554/eLife.51261
The evolution of the vestibular apparatus in apes and humansCited by: 21
Author(s): Alessandro Urciuoli, Clément Zanolli, Amélie Beaudet, Jean Dumoncel, Frédéric Santos, Salvador Moyà‐Solà, David M. Alba
Software Mentions: 8
Published: over 6 years ago
10.1084/jem.20210615
Single cell analysis of <i>M. tuberculosis</i> phenotype and macrophage lineages in the infected lungCited by: 63
Author(s): Davide Pisu, Lu Huang, Vipin Narang, Monique E. Theriault, Gabrielle Lê-Bury, Bernett Lee, Agnes E Lakudzala, David Mzinza, David V. Mhango, Steven C Mitini-Nkhoma, Kondwani Jambo, Amit Singhal, Henry C. Mwandumba, David G. Russell
Software Mentions: 8
Published: almost 5 years ago
10.3389/fimmu.2021.649551
TSPAN1, TMPRSS4, SDR16C5, and CTSE as Novel Panel for Pancreatic Cancer: A Bioinformatics Analysis and Experiments ValidationCited by: 11
Author(s): Yi-Jun Hua, Tiandong Li, Hua Wang, Jinyu Wu, Chuncheng Yi, Jianxiang Shi, Peng Wang, Chunhua Song, Liping Dai, Guozhong Jiang, Yuguang Huang, Yu Ye, Jitian Li
Software Mentions: 8
Published: over 5 years ago
10.3390/ani10101914
Post-Release Monitoring of Western Grey Kangaroos (Macropus fuliginosus) Relocated from an Urban Development SiteCited by: 6
Author(s): Mark A. Cowan, Mark Blythman, John Angus, Lesley Gibson
Software Mentions: 8
Published: over 5 years ago
10.1371/journal.pone.0163170
Single Nucleotide Polymorphisms in Cellular Drug Transporters Are Associated with Intolerance to Antiretroviral Therapy in Brazilian HIV-1 Positive IndividualsCited by: 8
Author(s): Mónica Arruda, Francine Campagnari, Tailah Bernardo de Almeida, José Carlos Couto-Fernandez, Amílcar Tanuri, Cynthia Chester Cardoso
Software Mentions: 8
Published: almost 10 years ago
10.1186/1471-2164-15-786
A transcriptome resource for the koala (Phascolarctos cinereus): insights into koala retrovirus transcription and sequence diversityCited by: 47
Author(s): Matthew Hobbs, Ana Pavasovic, Andrew King, Peter J. Prentis, Mark D. B. Eldridge, Zhiliang Chen, Donald J. Colgan, Adam Polkinghorne, Marc R. Wilkins, Cheyne Flanagan, Amber Gillett, Jon Hanger, Rebecca N. Johnson, Peter Timms
Software Mentions: 8
Published: almost 12 years ago
10.3390/foods8100488
Effect of Product Involvement on Panels’ Vocabulary Generation, Attribute Identification, and Sample Configurations in BeerCited by: 4
Author(s): Line Elgaard, Line Holler Mielby, Hildegarde Heymann, Derek V. Byrne
Software Mentions: 8
Published: over 6 years ago
10.3389/fmicb.2020.610269
Zebra Mussel Holobionts Fix and Recycle Nitrogen in Lagoon SedimentsCited by: 15
Author(s): Ugo Marzocchi, Stefano Bonaglia, Anastasija Zaiko, Grazia Marina Quero, Irma Vybernaite‐Lubiene, Tobia Politi, Aurelija Samuilovienė, Mindaugas Žilius, Marco Bartoli, Ulisse Cardini
Software Mentions: 8
Published: over 5 years ago
10.1186/s12859-016-1051-4
gtrellis: an R/Bioconductor package for making genome-level Trellis graphicsCited by: 17
Author(s): Zuguang Gu, Roland Eils, Matthias Schlesner
Software Mentions: 8
Published: about 10 years ago
10.18632/aging.103947
Autophagy-related long noncoding RNAs can predict prognosis in patients with bladder cancerCited by: 11
Author(s): Cong Lai, Zhenyu Wu, Juan Shi, Kaiwen Li, Jiamin Zhu, Zhenhong Chen, Cheng Liu, Kecheng Xu
Software Mentions: 8
Published: over 5 years ago
10.1371/journal.pone.0109917
Adjacent Habitat Influence on Stink Bug (Hemiptera: Pentatomidae) Densities and the Associated Damage at Field Corn and Soybean EdgesCited by: 67
Author(s): P. Dilip Venugopal, Peter L. Coffey, Galen P. Dively, William O. Lamp
Software Mentions: 8
Published: over 11 years ago
10.3389/fonc.2021.561763
Predict Colon Cancer by Pairing Plasma miRNAs: Establishment of a Normalizer-Free, Cross-Platform ModelCited by: 3
Author(s): Dashan Qin, Qingdong Guo, Rui Wei, Si Liu, Shoumin Zhu, Shutian Zhang, Li Min
Software Mentions: 8
Published: about 5 years ago
10.1371/journal.pone.0247476
Small area estimation and childhood obesity surveillance using electronic health recordsCited by: 5
Author(s): Ying‐Qi Zhao, Derek Norton, Larry Hanrahan
Software Mentions: 8
Published: over 5 years ago
10.1161/CIRCEP.120.008651
Complete Electroanatomic Imaging of the Diastolic Pathway Is Associated With Improved Freedom From Ventricular Tachycardia RecurrenceCited by: 22
Author(s): Alexios Hadjis, Antonio Frontera, Luca Rosario Limite, Caterina Bisceglia, Ludovica Bognoni, Luca Foppoli, Felicia Lipartiti, Gabriele Paglino, Andrea Radinovic, Georgio Tsitsinakis, Federico Calore, Paolo Della Bella
Software Mentions: 8
Published: almost 6 years ago
10.3389/fmicb.2019.02492
Do Organic Substrates Drive Microbial Community Interactions in Arctic Snow?Cited by: 17
Author(s): Benoît Bergk Pinto, Lorrie Maccario, Aurélien Dommergue, Timothy M. Vogel, Catherine Larose
Software Mentions: 8
Published: over 6 years ago
10.3389/fmicb.2018.03150
The Human Gut Virome in HypertensionCited by: 34
Author(s): Maozhen Han, Pengshuo Yang, Chunrong Zhong, Kang Ning
Software Mentions: 8
Published: over 7 years ago
10.18632/oncotarget.16961
RNA sequencing-based cell proliferation analysis across 19 cancers identifies a subset of proliferation-informative cancers with a common survival signatureCited by: 24
Author(s): Ryne C. Ramaker, Brittany N. Lasseigne, Andrew A. Hardigan, Laura Palacio, David S. Gunther, R Myers, Sara J. Cooper
Software Mentions: 8
Published: about 9 years ago
10.1016/j.molcel.2021.03.041
DNAJC9 integrates heat shock molecular chaperones into the histone chaperone networkCited by: 28
Author(s): Colin M. Hammond, Hongyu Bao, Ivo A. Hendriks, Massimo Carraro, Alberto García-Nieto, Yanhong Liu, Nazaret Reverón-Gómez, Christos Spanos, Liu Chen, Juri Rappsilber, Michael L. Nielsen, Dinshaw J. Patel, Hongda Huang, Anja Groth
Software Mentions: 8
Published: about 5 years ago
10.1371/journal.pone.0106499
Mean Annual Precipitation Explains Spatiotemporal Patterns of Cenozoic Mammal Beta Diversity and Latitudinal Diversity Gradients in North AmericaCited by: 26
Author(s): Danielle Fraser, Christopher Hassall, Root Gorelick, Natalia Rybczynski
Software Mentions: 8
Published: almost 12 years ago
10.1002/ece3.7428
An endangered flightless grasshopper with strong genetic structure maintains population genetic variation despite extensive habitat lossCited by: 15
Author(s): Ary A. Hoffmann, Vanessa L. White, Moshe Jasper, Hiromi Yagui, Steve Sinclair, Michael R. Kearney
Software Mentions: 8
Published: about 5 years ago
10.1155/2021/8892849
Correlation Analysis between GDM and Gut Microbial Composition in Late PregnancyCited by: 17
Author(s): Genxia Li, Pan Yin, Shuhui Chu, Wen Gao, Shihong Cui, Shuhua Guo, Yajuan Xu, Enwu Yuan, Texuan Zhu, Jie You, Junya Zhang, Manman Yang
Software Mentions: 8
Published: over 5 years ago
10.34133/2020/3074916
RhizoVision Crown: An Integrated Hardware and Software Platform for Root Crown PhenotypingCited by: 65
Author(s): Anand Seethepalli, Haichao Guo, Xiuwei Liu, Marcus Griffiths, Hussien Almtarfi, Zenglu Li, Shuyu Liu, Alina Zare, Felix B. Fritschi, Elison B. Blancaflor, Xuefeng Ma, Larry M. York
Software Mentions: 8
Published: over 6 years ago
10.3389/fvets.2018.00173
The Distribution of Bovine Tuberculosis in Cattle Farms Is Linked to Cattle Trade and Badger-Mediated Contact Networks in South-Western France, 2007–2015Cited by: 18
Author(s): Malika Bouchez-Zacria, Aurélie Courcoul, Benoı̂t Durand
Software Mentions: 8
Published: almost 8 years ago
10.1016/S2542-5196(21)00030-9
Identifying urban hotspots of dengue, chikungunya, and Zika transmission in Mexico to support risk stratification efforts: a spatial analysisCited by: 28
Author(s): Felipe Dzul-Manzanilla, Fabián Correa-Morales, Azael Che-Mendoza, Jorge Palacio-Vargas, Gustavo Sánchez-Tejeda, Jesús Felipe González-Roldán, Hugo López‐Gatell, Adriana E. Flores-Suárez, Héctor Gómez–Dantés, Giovanini Evelim Coelho, Haroldo Sergio da Silva Bezerra, Norma Pavía-Ruz, Audrey Lenhart, Pablo Manrique-Saide, Gonzalo M. Vázquez-Prokopec
Software Mentions: 8
Published: about 5 years ago
10.1371/journal.pone.0246491
Trophic structure of a nektobenthic community exploited by a multispecific bottom trawling fishery in Northeastern BrazilCited by: 3
Author(s): Alex Souza Lira, Flávia Lucena‐Frédou, Frédéric Ménard, Thierry Frédou, Júlio Guazzelli Gonzalez, Valdimere Ferreira, José Souto Rosa Filho, Jean-Marie Munaron, François Le Loc’h
Software Mentions: 8
Published: over 5 years ago
10.3389/fpsyg.2020.579545
When Large-Scale Assessments Meet Data Science: The Big-Fish-Little-Pond Effect in Fourth- and Eighth-Grade Mathematics Across NationsCited by: 4
Author(s): Ze Wang
Software Mentions: 8
Published: over 5 years ago
10.1186/s13072-021-00401-y
Evaluation of whole-genome DNA methylation sequencing library preparation protocolsCited by: 18
Author(s): Jacob Morrison, Julie Koeman, Benjamin K. Johnson, Kelly K. Foy, Ian Beddows, Wanding Zhou, David Chesla, Larissa L. Rossell, Emily J. Siegwald, Marie Adams, Hui Shen
Software Mentions: 8
Published: about 5 years ago
10.1038/s41598-020-62354-8
Differential stromal reprogramming in benign and malignant naturally occurring canine mammary tumours identifies disease-modulating stromal componentsCited by: 18
Author(s): Parisa Amini, Sina Nassiri, Alexandra Malbon, Enni Markkanen
Software Mentions: 8
Published: over 6 years ago
10.3390/microorganisms9091929
Relative Importance of Deterministic and Stochastic Processes on Soil Microbial Community Assembly in Temperate GrasslandsCited by: 17
Author(s): Nana Liu, Huifeng Hu, Wenqi Ma, Ye Deng, Qinggang Wang, Ao Luo, Jiahui Meng, Xiaojuan Feng, Zhiheng Wang
Software Mentions: 8
Published: almost 5 years ago
10.3389/fimmu.2021.711337
Single-Cell RNA Sequencing Identifies New Inflammation-Promoting Cell Subsets in Asian Patients With Chronic PeriodontitisCited by: 17
Author(s): Shu‐Jiao Qian, Qing-Guo Huang, Ruiying Chen, Jia-Ji Mo, Liyun Zhou, Yi Zhao, Bin Li, Hong-Chang Lai
Software Mentions: 8
Published: almost 5 years ago
10.3390/cells9030786
Systematic Identification of Housekeeping Genes Possibly Used as References in Caenorhabditis elegans by Large-Scale Data IntegrationCited by: 13
Author(s): Jingxin Tao, Youjin Hao, Xudong Li, Huachun Yin, Xiner Nie, Jie Zhang, Bo-Ying Xu, Chen Qiao, Bo Li
Software Mentions: 8
Published: over 6 years ago
10.3390/ijerph18115564
Identification of Hub Genes in Different Stages of Colorectal Cancer through an Integrated Bioinformatics ApproachCited by: 2
Author(s): Abhijeet R. Patil, Ming-Ying Leung, Sourav Roy
Software Mentions: 8
Published: about 5 years ago
10.3390/v12090956
Human Endogenous Retrovirus Expression Is Associated with Head and Neck Cancer and Differential SurvivalCited by: 17
Author(s): Allison R. Kolbe, Matthew L. Bendall, Alexander T. Pearson, Doru Paul, Douglas F. Nixon, Marcos Pérez‐Losada, Keith A. Crandall
Software Mentions: 8
Published: almost 6 years ago
10.1371/journal.pone.0242730
A comparison of penalised regression methods for informing the selection of predictive markersCited by: 14
Author(s): Christopher J Greenwood, George J. Youssef, Primrose Letcher, Jacqui A. Macdonald, Lauryn Hagg, Ann Sanson, Jennifer McIntosh, Delyse Hutchinson, John W. Toumbourou, Matthew Fuller‐Tyszkiewicz, Craig A. Olsson
Software Mentions: 8
Published: over 5 years ago
10.7717/peerj.1360
Getting the most out of RNA-seq data analysisCited by: 22
Author(s): Tsung Fei Khang, Ching Yee Lau
Software Mentions: 8
Published: over 10 years ago
10.1002/ece3.4387
Toward an ecoregion scale evaluation of <scp>eDNA</scp> metabarcoding primers: A case study for the freshwater fish biodiversity of the Murray–Darling Basin (Australia)Cited by: 69
Author(s): Jonas Bylemans, Dianne Gleeson, Christopher M. Hardy, Elise M. Furlan
Software Mentions: 8
Published: almost 8 years ago
10.1093/cz/zoab026
Hormonal modulation of reproduction and fertility signaling in polistine waspsCited by: 8
Author(s): Cíntia Akemi Oi, Rafael Carvalho da Silva, I. D. R. Stevens, Helena Mendes Ferreira, Fábio Santos do Nascimento, Tom Wenseleers
Software Mentions: 8
Published: over 5 years ago
10.3389/fmicb.2020.01780
Response of Soil Bacterial Community Diversity and Composition to Time, Fertilization, and Plant Species in a Sub-Boreal ClimateCited by: 5
Author(s): Honghong Li, Petri Penttinen, Anu Mikkonen, Frederick L. Stoddard, Kristina Lindström
Software Mentions: 8
Published: almost 6 years ago
10.1371/journal.pgen.1008658
Parallelism in eco-morphology and gene expression despite variable evolutionary and genomic backgrounds in a Holarctic fishCited by: 63
Author(s): Arne Jacobs, Madeleine Carruthers, Andrey A. Yurchenko, Н. В. Гордеева, S. S. Alekseyev, Oliver E. Hooker, Jong S. Leong, David R. Minkley, Eric B. Rondeau, Ben F. Koop, Colin E. Adams, Kathryn R. Elmer
Software Mentions: 8
Published: about 6 years ago
10.1128/mBio.01369-21
HIV-1 Vpr Induces Widespread Transcriptomic Changes in CD4 <sup>+</sup> T Cells Early PostinfectionCited by: 6
Author(s): Hélène Bauby, Christopher Ward, Rupert Hugh-White, Chad M. Swanson, Reiner Schulz, Caroline Goujon, Michael H. Malim
Software Mentions: 8
Published: almost 5 years ago
10.1186/1471-2105-14-179
Modelling and visualizing fine-scale linkage disequilibrium structureCited by: 3
Author(s): D.J. Edwards
Software Mentions: 8
Published: about 13 years ago
10.1038/s41389-019-0157-8
DeepCC: a novel deep learning-based framework for cancer molecular subtype classificationCited by: 119
Author(s): Feng Gao, Wei Wang, Miaomiao Tan, Lina Zhu, Yuchen Zhang, Evelyn Fessler, Louis Vermeulen, Xin Wang
Software Mentions: 8
Published: almost 7 years ago
10.1111/mec.14523
Shifts in diversification rates and host jump frequencies shaped the diversity of host range among <i>Sclerotiniaceae</i> fungal plant pathogensCited by: 39
Author(s): Olivier Navaud, Adelin Barbacci, Andrew Taylor, John P. Clarkson, Sylvain Raffaele
Software Mentions: 8
Published: over 8 years ago
10.1186/s12974-020-01931-0
Effects of long-term and brain-wide colonization of peripheral bone marrow-derived myeloid cells in the CNSCited by: 28
Author(s): Lindsay A. Hohsfield, Allison R. Najafi, Yasamine Ghorbanian, Neelakshi Soni, Edna E. Hingco, Sung Jin Kim, Ayer Darling Jue, Vivek Swarup, Mathew A. Inlay, Kim N. Green
Software Mentions: 8
Published: almost 6 years ago
10.3389/fpsyg.2019.00458
Body Odor Disgust Sensitivity Predicts Moral Harshness Toward Moral Violations of PurityCited by: 13
Author(s): Marco Tullio Liuzza, Jonas Olofsson, Sebastian Cancino-Montecinos, Torun Lindholm
Software Mentions: 8
Published: over 7 years ago
10.3389/fmicb.2021.686759
“Jumping Jack”: Genomic Microsatellites Underscore the Distinctiveness of Closely Related Pseudoperonospora cubensis and Pseudoperonospora humuli and Provide New Insights Into Their Evolutionary PastCited by: 2
Author(s): Marcin Nowicki, Denita Hadziabdic, Robert N. Trigiano, Sarah L. Boggess, Loukas Kanetis, Phillip A. Wadl, Peter S. Ojiambo, Marc A. Cubeta, Otmar Spring, Marco Thines, Fabian Runge, Brian E. Scheffler
Software Mentions: 8
Published: almost 5 years ago
10.1186/s12964-021-00728-9
Multi-omics analysis of tumor angiogenesis characteristics and potential epigenetic regulation mechanisms in renal clear cell carcinomaCited by: 28
Author(s): Wenzhong Zheng, Shiqiang Zhang, Huan Guo, Xiaobao Chen, Zhangcheng Huang, Shaoqin Jiang, Mengqiang Li
Software Mentions: 8
Published: over 5 years ago