Data

Tools

Indexes

Applications

Experiments

Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1186/s40168-019-0748-9

https://doi.org/10.1186/s40168-019-0748-9

Microbial communities of the house fly Musca domestica vary with geographical location and habitat

Cited by: 58
Author(s): Rahel Park, Maria C. Dzialo, Stijn Spaepen, Donat Nsabimana, Kim Gielens, Herman Devriese, Sam Crauwels, Raúl Y. Tito, Jeroen Raes, Bart Lievens, Kevin J. Verstrepen
Published: over 5 years ago

Software Mentions 8

bioconductor: decontam
Identify Contaminants in Marker-gene and Metagenomics Sequencing Data
Papers that mentioned: 76
Very Likely Science (100)
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
Very Likely Science (75)
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
Very Likely Science (100)
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
Very Likely Science (100)
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562
Very Likely Science (100)
pypi: decontam
Decontaminate paired-end DNA sequencing data
Papers that mentioned: 76
Very Likely Science (75)
pypi: itsxpress
Rapidly trim sequences down to their Internally Transcribed Spacer ITS regions
Papers that mentioned: 1
Very Likely Science (80)
pypi: scripts
Various shell scripts
Papers that mentioned: 315
Very Likely Science (65)