Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12864-019-5747-5

https://doi.org/10.1186/s12864-019-5747-5

scNPF: an integrative framework assisted by network propagation and network fusion for preprocessing of single-cell RNA-seq data

Cited by: 10
Author(s): Michael Fraser, Guoli Ji, Pengchao Ye, Yuqi Long, Xuesong Xiao, Shuchao Li, Yangfeng Su, Xiaohui Wu
Published: over 5 years ago

Software Mentions 8

bioconductor: netSmooth

Network smoothing for scRNAseq
Papers that mentioned: 8

bioconductor: SIMLR

Single-cell Interpretation via Multi-kernel LeaRning (SIMLR)
Papers that mentioned: 40

cran: igraph

Network Analysis and Visualization
Papers that mentioned: 1,555

cran: Rtsne

T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut Implementation
Papers that mentioned: 255

cran: SAVER

Single-Cell RNA-Seq Gene Expression Recovery
Papers that mentioned: 40

cran: WGCNA

Weighted Correlation Network Analysis
Papers that mentioned: 3,479

pypi: igraph

High performance graph data structures and algorithms
Papers that mentioned: 1,555

pypi: SIMLR

Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learning
Papers that mentioned: 40