Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: netSmooth

https://packages.ecosyste.ms/registries/bioconductor.org/packages/netSmooth

Network smoothing for scRNAseq
1 version
Latest release: 12 months ago
1 dependent package
7,032 downloads total

Papers Mentioning netSmooth 8

10.1093/gigascience/giy123
PiGx: reproducible genomics analysis pipelines with GNU Guix
Cited by: 51
Author(s): Ricardo Wurmus, Bora Uyar, Brendan Osberg, Vedran Franke, Alexander Gosdschan, Katarzyna Wreczycka, Jonathan Ronen, Altuna Akalin
Software Mentions: 15
Published: about 6 years ago
10.1186/s13059-020-1926-6
Eleven grand challenges in single-cell data science
Cited by: 646
Author(s): David Laehnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie Hicks, Mark D. Robinson, Catalina A. Vallejos, Kieran R Campbell, Niko Beerenwinkel, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan‐Otto Attolini, Samuel Aparicio, Jasmijn A. Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M Keizer, Indu Khatri, Szymon M. Kiełbasa, Jan Korbel, Alexey M Kozlov, Tzu Hao Kuo, Boudewijn P. F. Lelieveldt, Ion Măndoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Łukasz Rączkowski, Marcel J. T. Reinders, Jeroen de Ridder, Antoine Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alexander Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth
Software Mentions: 11
Published: over 4 years ago
10.1371/journal.pcbi.1009029
G2S3: A gene graph-based imputation method for single-cell RNA sequencing data
Cited by: 7
Author(s): Weimiao Wu, Yunqing Liu, Qile Dai, Xiting Yan, Zuoheng Wang
Software Mentions: 9
Published: over 3 years ago
10.1186/s12864-019-5747-5
scNPF: an integrative framework assisted by network propagation and network fusion for preprocessing of single-cell RNA-seq data
Cited by: 10
Author(s): Michael Fraser, Guoli Ji, Pengchao Ye, Yuqi Long, Xuesong Xiao, Shuchao Li, Yangfeng Su, Xiaohui Wu
Software Mentions: 8
Published: over 5 years ago
10.26508/lsa.201900517
Evaluation of colorectal cancer subtypes and cell lines using deep learning
Cited by: 59
Author(s): Jonathan Ronen, Sikander Hayat, Altuna Akalin
Software Mentions: 4
Published: almost 5 years ago
10.3390/genes11040377
Network-Based Single-Cell RNA-Seq Data Imputation Enhances Cell Type Identification
Cited by: 15
Author(s): Maryam Zand, Jianhua Ruan
Software Mentions: 4
Published: over 4 years ago
10.12688/f1000research.13511.3
netSmooth: Network-smoothing based imputation for single cell RNA-seq
Cited by: 53
Author(s): Jonathan Ronen, Altuna Akalin
Software Mentions: 2
Published: about 6 years ago
10.1186/s12859-021-04075-x
Denoising large-scale biological data using network filters
Cited by: 3
Author(s): Andrew J Kavran, Aaron Clauset
Software Mentions: 1
Published: over 3 years ago