Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-020-1926-6

https://doi.org/10.1186/s13059-020-1926-6

Cited by: 646
Author(s): David Laehnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie Hicks, Mark D. Robinson, Catalina A. Vallejos, Kieran R Campbell, Niko Beerenwinkel, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan‐Otto Attolini, Samuel Aparicio, Jasmijn A. Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M Keizer, Indu Khatri, Szymon M. Kiełbasa, Jan Korbel, Alexey M Kozlov, Tzu Hao Kuo, Boudewijn P. F. Lelieveldt, Ion Măndoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Łukasz Rączkowski, Marcel J. T. Reinders, Jeroen de Ridder, Antoine Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alexander Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth
Published: over 4 years ago

Software Mentions 11

bioconductor: ADImpute
Adaptive Dropout Imputer (ADImpute)
Papers that mentioned: 1
bioconductor: BEARscc
BEARscc (Bayesian ERCC Assesstment of Robustness of Single Cell Clusters)
Papers that mentioned: 2
bioconductor: countsimQC
Compare Characteristic Features of Count Data Sets
Papers that mentioned: 6
bioconductor: mixOmics
Omics Data Integration Project
Papers that mentioned: 375
bioconductor: netSmooth
Network smoothing for scRNAseq
Papers that mentioned: 8
cran: DCA
Dynamic Correlation Analysis for High Dimensional Data
Papers that mentioned: 128
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
pypi: DCA
Count autoencoder for scRNA-seq denoising
Papers that mentioned: 128
pypi: Ginkgo
Lightweight service framework
Papers that mentioned: 39
pypi: MNN
C methods for MNN Package
Papers that mentioned: 12
pypi: SymSim
Tool for simulating planes of symmetries assuming kinematic diffraction
Papers that mentioned: 7