Projects: bioconductor: countsimQC
https://packages.ecosyste.ms/registries/bioconductor.org/packages/countsimQC
Compare Characteristic Features of Count Data Sets
1 version
Latest release: over 2 years ago
1 dependent package
6,838 downloads total
Enhanced Analysis
Educational Contributors:
jennifer.wokaty@sph.cuny.edu
andres.wokaty@sph.cuny.edu
Repository Activity:
Repository Owner:
Charlotte Soneson (user)
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+40
Educational commit emails
2 contributors with educational email addresses -
+4
Science terms in README
2 scientific terms found in README -
+6
Academic links
1 academic links found in README
Penalties:
-
-10
No science terms in description
No scientific terms found in description
Very Likely Science (100)
Papers Mentioning countsimQC 6
10.12688/f1000research.15666.3
A systematic performance evaluation of clustering methods for single-cell RNA-seq dataCited by: 33
Author(s): Angelo Duò, Mark D. Robinson, Charlotte Soneson
Software Mentions: 17
Published: over 5 years ago
10.12688/f1000research.15398.3
Swimming downstream: statistical analysis of differential transcript usage following Salmon quantificationCited by: 53
Author(s): Michael I. Love, Charlotte Soneson, Rob Patro
Software Mentions: 16
Published: over 7 years ago
10.26508/lsa.202001004
CellMixS: quantifying and visualizing batch effects in single-cell RNA-seq dataCited by: 21
Author(s): Almut Luetge, Joanna Zyprych-Walczak, Urszula Brykczynska Kunzmann, Helena L. Crowell, Daniela Calini, Dheeraj Malhotra, Charlotte Soneson, Mark D. Robinson
Software Mentions: 12
Published: about 5 years ago
10.1186/s13059-020-1926-6
Eleven grand challenges in single-cell data scienceCited by: 646
Author(s): David Laehnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie Hicks, Mark D. Robinson, Catalina A. Vallejos, Kieran R Campbell, Niko Beerenwinkel, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan‐Otto Attolini, Samuel Aparicio, Jasmijn A. Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M Keizer, Indu Khatri, Szymon M. Kiełbasa, Jan Korbel, Alexey M Kozlov, Tzu Hao Kuo, Boudewijn P. F. Lelieveldt, Ion Măndoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Łukasz Rączkowski, Marcel J. T. Reinders, Jeroen de Ridder, Antoine Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alexander Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth
Software Mentions: 11
Published: over 6 years ago
10.1093/bioinformatics/btx631
Towards unified quality verification of synthetic count data with <i>countsimQC</i>Cited by: 39
Author(s): Charlotte Soneson, Mark D. Robinson
Software Mentions: 5
Published: over 8 years ago
10.1186/s13059-018-1406-4
Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applicationsCited by: 159
Author(s): Koen Van den Berge, Fanny Perraudeau, Charlotte Soneson, Michael I. Love, Davide Risso, Jean-Philippe Vert, Mark D. Robinson, Sandrine Dudoit
Software Mentions: 4
Published: over 8 years ago