pypi: ncbi-genome-download
Download genome files from the NCBI FTP server.
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pypi: PheWeb
A tool for building PheWAS websites from association files
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pypi: group
Papers that mentioned: 7
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cran: RCT
Assign Treatments, Power Calculations, Balances, Impact Evaluation of Experiments
Papers that mentioned: 7
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pypi: via
initialize your repository
Papers that mentioned: 7
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cran: MOCCA
Multi-Objective Optimization for Collecting Cluster Alternatives
Papers that mentioned: 7
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pypi: SeqUtils
SeqUtils - general utilities to aid in system administration and analysis tasks
Papers that mentioned: 7
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pypi: SigProfilerMatrixGenerator
SigProfiler matrix generator tool
Papers that mentioned: 7
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cran: VineCopula
Statistical Inference of Vine Copulas
Papers that mentioned: 7
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cran: scrime
Analysis of High-Dimensional Categorical Data Such as SNP Data
Papers that mentioned: 7
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cran: threejs
Interactive 3D Scatter Plots, Networks and Globes
Papers that mentioned: 7
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cran: viridisLite
Colorblind-Friendly Color Maps (Lite Version)
Papers that mentioned: 7
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cran: STAT2
Interactive Document for Working with Basic Statistical Analysis
Papers that mentioned: 7
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pypi: do-calculus
A Python implementation of the do-calculus of Judea Pearl et. al.
Papers that mentioned: 7
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pypi: Variance
A python configuration manager
Papers that mentioned: 7
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cran: spacetime
Classes and Methods for Spatio-Temporal Data
Papers that mentioned: 7
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cran: randomcoloR
Generate Attractive Random Colors
Papers that mentioned: 7
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cran: rBayesianOptimization
Bayesian Optimization of Hyperparameters
Papers that mentioned: 7
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pypi: Minos
Minos is a library to do flexible validation of Python objects
Papers that mentioned: 7
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pypi: humann2
HUMAnN2: The HMP Unified Metabolic Analysis Network 2
Papers that mentioned: 7
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cran: alphashape3d
Implementation of the 3D Alpha-Shape for the Reconstruction of 3D Sets from a Point Cloud
Papers that mentioned: 7
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pypi: trf
A parser and dumper for the fide approved tournament report format: trf
Papers that mentioned: 7
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cran: onemap
Construction of Genetic Maps in Experimental Crosses
Papers that mentioned: 7
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pypi: ushuffle
A Cython wrapper over uShuffle - a useful tool for shuffling biological sequences while preserving the k-let counts.
Papers that mentioned: 7
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pypi: CADS
Python Package to add new download services to Copernicus and make easier managing voluminous data requests.
Papers that mentioned: 7
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cran: ttScreening
Genome-Wide DNA Methylation Sites Screening by Use of Training and Testing Samples
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pypi: pyfaidx
pyfaidx: efficient pythonic random access to fasta subsequences
Papers that mentioned: 7
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pypi: torrent
python data scharing
Papers that mentioned: 7
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pypi: PyLEMS
A Python library for working with the Low Entropy Model Specification language (LEMS)
Papers that mentioned: 7
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pypi: pydeface
A script to remove facial structure from MRI images.
Papers that mentioned: 7
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pypi: vignette
Library to create FreeDesktop-compatible thumbnails
Papers that mentioned: 7
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pypi: rel
Registered Event Listener. Provides standard (pyevent) interface and functionality without external dependencies
Papers that mentioned: 7
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pypi: Fossil
A basic revision control system.
Papers that mentioned: 7
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cran: NBLDA
Negative Binomial Linear Discriminant Analysis
Papers that mentioned: 7
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pypi: gamma
gamma
Papers that mentioned: 7
Very Likely Science (65)
pypi: simple
simple.gui - Simplified GUI generation using Tkinter
Papers that mentioned: 7
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pypi: SigProfilerExtractor
Extracts mutational signatures from mutational catalogues
Papers that mentioned: 7
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cran: PTXQC
Quality Report Generation for MaxQuant and mzTab Results
Papers that mentioned: 7
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cran: mvna
Nelson-Aalen Estimator of the Cumulative Hazard in Multistate Models
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bioconductor: pmm
Parallel Mixed Model
Papers that mentioned: 7
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cran: BeSS
Best Subset Selection in Linear, Logistic and CoxPH Models
Papers that mentioned: 7
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pypi: bcf
BigClown Firmware Tool.
Papers that mentioned: 7
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cran: infer
Tidy Statistical Inference
Papers that mentioned: 7
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pypi: mining
BI Application Server written by Python and Riak
Papers that mentioned: 7
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bioconductor: rDGIdb
R Wrapper for DGIdb
Papers that mentioned: 7
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cran: BASS
Bayesian Adaptive Spline Surfaces
Papers that mentioned: 7
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pypi: ECLAIR
Robust inference of cell lineages from gene expression data via consensus clustering and the aggregation of ensembles of minimum spanning trees.
Papers that mentioned: 7
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cran: AdaptGauss
Gaussian Mixture Models (GMM)
Papers that mentioned: 7
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pypi: cogent
COmparative GENomics Toolkit
Papers that mentioned: 7
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cran: Rsolnp
General Non-Linear Optimization
Papers that mentioned: 7
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bioconductor: ROntoTools
R Onto-Tools suite
Papers that mentioned: 7
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pypi: response
Your handy frequency and impulse response processing object
Papers that mentioned: 7
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cran: div
Report on Diversity and Inclusion in a Corporate Setting
Papers that mentioned: 7
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cran: coxphw
Weighted Estimation in Cox Regression
Papers that mentioned: 7
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cran: outbreaker2
Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data
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pypi: advanced
advanced
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bioconductor: customProDB
Generate customized protein database from NGS data, with a focus on RNA-Seq data, for proteomics search
Papers that mentioned: 7
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pypi: Migration
A database/model migration extension for TurboGears
Papers that mentioned: 7
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cran: tscount
Analysis of Count Time Series
Papers that mentioned: 7
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pypi: napari
n-dimensional array viewer in Python
Papers that mentioned: 7
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pypi: MetaLocGramN
MetaLocGramN: a method for subcellular localization prediction of Gram-negative proteins.
Papers that mentioned: 7
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pypi: chemistry
Python library for chemistry, notably: the periodic table of elements
Papers that mentioned: 7
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cran: BIGDAWG
Case-Control Analysis of Multi-Allelic Loci
Papers that mentioned: 7
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cran: KODAMA
Knowledge Discovery by Accuracy Maximization
Papers that mentioned: 7
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cran: TSclust
Time Series Clustering Utilities
Papers that mentioned: 7
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cran: MetaIntegrator
Meta-Analysis of Gene Expression Data
Papers that mentioned: 7
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bioconductor: scDblFinder
scDblFinder
Papers that mentioned: 7
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pypi: svist4get
A simple visualization tool for genomic tracks from sequencing experiments
Papers that mentioned: 6
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pypi: Behaviour
Behaviour Driven Development in Python
Papers that mentioned: 6
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pypi: peddy
pleasingly pythonic pedigree manipulation
Papers that mentioned: 6
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pypi: ssm
Bayesian learning and inference for a variety of state space models
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bioconductor: SBMLR
SBML-R Interface and Analysis Tools
Papers that mentioned: 6
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cran: arrow
Integration to 'Apache' 'Arrow'
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pypi: gram
gram: GitHub Repo Account Manager
Papers that mentioned: 6
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cran: BFS
Get Data from the Swiss Federal Statistical Office
Papers that mentioned: 6
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cran: fANCOVA
Nonparametric Analysis of Covariance
Papers that mentioned: 6
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pypi: bcp
This is a python utility that allows users to import/export data to/from a database.
Papers that mentioned: 6
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pypi: Funnel
Flask extension for Beaker
Papers that mentioned: 6
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cran: Qtools
Utilities for Quantiles
Papers that mentioned: 6
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pypi: AlchemyAPI
Python access to AlchemyAPI for unstructured text analysis and natural language processing.
Papers that mentioned: 6
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cran: orca
Computation of Graphlet Orbit Counts in Sparse Graphs
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pypi: HyperFlow
Papers that mentioned: 6
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pypi: anti
SeoUtils
Papers that mentioned: 6
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cran: fasterize
Fast Polygon to Raster Conversion
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pypi: WPD
Render html to pdf with weasyprint, controled from stdin
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pypi: PWA
Papers that mentioned: 6
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pypi: ebird
Papers that mentioned: 6
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pypi: EyeTracking
Analysis of eye tracking data
Papers that mentioned: 6
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cran: rbounds
Perform Rosenbaum Bounds Sensitivity Tests for Matched and Unmatched Data
Papers that mentioned: 6
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cran: pdfCluster
Cluster Analysis via Nonparametric Density Estimation
Papers that mentioned: 6
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bioconductor: splatter
Simple Simulation of Single-cell RNA Sequencing Data
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cran: philentropy
Similarity and Distance Quantification Between Probability Functions
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cran: flextable
Functions for Tabular Reporting
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pypi: MKS
A unit system based on meter, kilo, and second
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cran: MOQA
Basic Quality Data Assurance for Epidemiological Research
Papers that mentioned: 6
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cran: morph
3D Segmentation of Voxels into Morphologic Classes
Papers that mentioned: 6
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pypi: CIRIquant
circular RNA quantification pipeline
Papers that mentioned: 6
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pypi: BioFlow
Information Flow Analysis in biological networks
Papers that mentioned: 6
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cran: phase
Analyse Biological Time-Series Data
Papers that mentioned: 6
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pypi: orca
Python library for task orchestration
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