Projects: pypi: SigProfilerMatrixGenerator
https://packages.ecosyste.ms/registries/pypi.org/packages/SigProfilerMatrixGenerator
SigProfiler matrix generator tool
102 versions
Latest release: almost 2 years ago
3 dependent packages
1,437 downloads last month
Enhanced Analysis
Repository Activity:
Repository Owner:
Alexandrov Lab (organization)
Academic
README Analysis:
DOI Found
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+80
Educational commit emails
4 contributors with educational email addresses -
+20
Academic repository owner
Repository owned by academic institution -
+15
Institutional repository owner
Repository owned by research institution -
+10
Educational website
Repository owner has educational domain website -
+10
Science terms in README
5 scientific terms found in README -
+10
DOI references
1 DOI references found in README
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem -
-15
No science keywords
No scientific terms found in keywords/classifiers -
-10
No science terms in description
No scientific terms found in description
Very Likely Science (100)
Papers Mentioning SigProfilerMatrixGenerator 7
10.1371/journal.pgen.1009302
UV-exposure, endogenous DNA damage, and DNA replication errors shape the spectra of genome changes in human skinCited by: 24
Author(s): Natalie Saini, Camille K. Giacobone, Leszek J. Klimczak, Brian N. Papas, Adam Burkholder, Jianliang Li, David C. Fargo, Re Bai, Kevin Gerrish, Cynthia L. Innes, Shepherd H. Schurman, Dmitry A. Gordenin
Software Mentions: 4
Published: over 4 years ago
10.1186/s12864-019-6041-2
SigProfilerMatrixGenerator: a tool for visualizing and exploring patterns of small mutational eventsCited by: 142
Author(s): Erik N. Bergstrom, Huang Mi, Uma Mahto, Mark Barnes, Michael R. Stratton, Steven G. Rozen, Ludmil B. Alexandrov
Software Mentions: 4
Published: almost 6 years ago
10.1038/s42003-021-01973-x
Genomic landscape of extraordinary responses in metastatic breast cancerCited by: 2
Author(s): Sun Min Lim, Eun Young Kim, Kyung Hae Jung, Sora Kim, Ja Seung Koo, Kyung Sik Kim, Seho Park, Hyung Seok Park, Byoung Woo Park, Young Up Cho, Jee Ye Kim, Soonmyung Paik, Nak‐Jung Kwon, Gun Min Kim, Ji Hyoung Kim, Min Hwan Kim, Min Hyok Jeon, Sang Woo Kim, Joohyuk Sohn
Software Mentions: 3
Published: over 4 years ago
10.1186/s12859-020-03772-3
Generating realistic null hypothesis of cancer mutational landscapes using SigProfilerSimulatorCited by: 24
Author(s): Erik N. Bergstrom, Mark Barnes, Iñigo Martincorena, Ludmil B. Alexandrov
Software Mentions: 3
Published: almost 5 years ago
10.1038/s41598-021-98084-8
Paired comparisons of mutational profiles before and after brachytherapy in asian uveal melanoma patientsCited by: 1
Author(s): Woo Seung Lee, Junwon Lee, Jun‐Chul Choi, Hyun Goo Kang, Sung Chul Lee, Ju Han Kim
Software Mentions: 3
Published: almost 4 years ago
10.1038/s42003-021-02597-x
Differential whole-genome doubling and homologous recombination deficiencies across breast cancer subtypes from the Taiwanese populationCited by: 2
Author(s): Chia-Hsin Wu, Chia Shan Hsieh, Yo Cheng Chang, Chi Cheng Huang, Hsien Tang Yeh, Ming‐Feng Hou, Yuan Chiang Chung, Shih Hsin Tu, Kang‐Tsung Chang, Amrita Chattopadhyay, Liang‐Chuan Lai, Tzu-Pin Lu, Yung Hua Li, Mong‐Hsun Tsai, Eric Y. Chuang
Software Mentions: 2
Published: almost 4 years ago
10.3389/fonc.2020.625866
Development of a Genomic Signatures-Based Predictor of Initial Platinum-Resistance in Advanced High-Grade Serous Ovarian Cancer PatientsCited by: 8
Author(s): Yuan Li, Xiaolan Zhang, Yan Gao, Chunliang Shang, Bo Yu, Tongxia Wang, Junyan Su, Cuiyu Huang, Yu Wu, Hongyan Guo, Chunfang Ha
Software Mentions: 1
Published: over 4 years ago