Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: SigProfilerMatrixGenerator

https://packages.ecosyste.ms/registries/pypi.org/packages/SigProfilerMatrixGenerator

SigProfiler matrix generator tool
102 versions
Latest release: about 1 year ago
3 dependent packages
1,437 downloads last month

Papers Mentioning SigProfilerMatrixGenerator 7

10.1371/journal.pgen.1009302

UV-exposure, endogenous DNA damage, and DNA replication errors shape the spectra of genome changes in human skin
Cited by: 24
Author(s): Natalie Saini, Camille K. Giacobone, Leszek J. Klimczak, Brian N. Papas, Adam Burkholder, Jianliang Li, David C. Fargo, Re Bai, Kevin Gerrish, Cynthia L. Innes, Shepherd H. Schurman, Dmitry A. Gordenin
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12864-019-6041-2

SigProfilerMatrixGenerator: a tool for visualizing and exploring patterns of small mutational events
Cited by: 142
Author(s): Erik N. Bergstrom, Huang Mi, Uma Mahto, Mark Barnes, Michael R. Stratton, Steven G. Rozen, Ludmil B. Alexandrov
Software Mentions: 4
Published: about 5 years ago

10.1038/s42003-021-01973-x

Genomic landscape of extraordinary responses in metastatic breast cancer
Cited by: 2
Author(s): Sun Min Lim, Eun Young Kim, Kyung Hae Jung, Sora Kim, Ja Seung Koo, Kyung Sik Kim, Seho Park, Hyung Seok Park, Byoung Woo Park, Young Up Cho, Jee Ye Kim, Soonmyung Paik, Nak‐Jung Kwon, Gun Min Kim, Ji Hyoung Kim, Min Hwan Kim, Min Hyok Jeon, Sang Woo Kim, Joohyuk Sohn
Software Mentions: 3
Published: over 3 years ago

10.1186/s12859-020-03772-3

Generating realistic null hypothesis of cancer mutational landscapes using SigProfilerSimulator
Cited by: 24
Author(s): Erik N. Bergstrom, Mark Barnes, Iñigo Martincorena, Ludmil B. Alexandrov
Software Mentions: 3
Published: about 4 years ago

10.1038/s41598-021-98084-8

Paired comparisons of mutational profiles before and after brachytherapy in asian uveal melanoma patients
Cited by: 1
Author(s): Woo Seung Lee, Junwon Lee, Jun‐Chul Choi, Hyun Goo Kang, Sung Chul Lee, Ju Han Kim
Software Mentions: 3
Published: about 3 years ago

10.1038/s42003-021-02597-x

Differential whole-genome doubling and homologous recombination deficiencies across breast cancer subtypes from the Taiwanese population
Cited by: 2
Author(s): Chia-Hsin Wu, Chia Shan Hsieh, Yo Cheng Chang, Chi Cheng Huang, Hsien Tang Yeh, Ming‐Feng Hou, Yuan Chiang Chung, Shih Hsin Tu, Kang‐Tsung Chang, Amrita Chattopadhyay, Liang‐Chuan Lai, Tzu-Pin Lu, Yung Hua Li, Mong‐Hsun Tsai, Eric Y. Chuang
Software Mentions: 2
Published: about 3 years ago

10.3389/fonc.2020.625866

Development of a Genomic Signatures-Based Predictor of Initial Platinum-Resistance in Advanced High-Grade Serous Ovarian Cancer Patients
Cited by: 8
Author(s): Yuan Li, Xiaolan Zhang, Yan Gao, Chunliang Shang, Bo Yu, Tongxia Wang, Junyan Su, Cuiyu Huang, Yu Wu, Hongyan Guo, Chunfang Ha
Software Mentions: 1
Published: over 3 years ago