Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: ushuffle
https://packages.ecosyste.ms/registries/pypi.org/packages/ushuffle
A Cython wrapper over uShuffle - a useful tool for shuffling biological sequences while preserving the k-let counts.
11 versions
Latest release: over 4 years ago
2 dependent packages
110 downloads last month
Papers Mentioning ushuffle 7
10.7554/eLife.49658
Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and m6A modificationCited by: 278
Author(s): Matthew T Parker, Katarzyna Knop, Anna V. Sherwood, Nicholas J. Schurch, Katarzyna Mackinnon, Peter D Gould, Anthony Hall, Geoffrey J. Barton, Gordon G. Simpson
Software Mentions: 7
Published: almost 5 years ago
10.1186/1471-2164-11-432
Bcheck: a wrapper tool for detecting RNase P RNA genesCited by: 24
Author(s): Dilmurat Yusuf, Manja Marz, Peter F. Stadler, Ivo L. Hofacker
Software Mentions: 4
Published: over 14 years ago
10.3389/fcimb.2020.617998
High-Resolution Mapping of Transcription Initiation in the Asexual Stages of Toxoplasma gondiiCited by: 9
Author(s): Benedikt M. Markus, Benjamin S. Waldman, Hernan Lorenzi, Sebastian Lourido
Software Mentions: 3
Published: almost 4 years ago
10.1186/s12859-019-3033-9
MiPepid: MicroPeptide identification tool using machine learningCited by: 46
Author(s): Mengmeng Zhu, Michael Gribskov
Software Mentions: 3
Published: about 5 years ago
10.1186/1471-2105-11-133
MapMi: automated mapping of microRNA lociCited by: 60
Author(s): José Afonso Guerra-Assunção, Anton J. Enright
Software Mentions: 3
Published: over 14 years ago
10.1186/1471-2164-12-90
GC content around splice sites affects splicing through pre-mRNA secondary structuresCited by: 77
Author(s): Jing Zhang, C.-C. Jay Kuo, Liang Chen
Software Mentions: 1
Published: almost 14 years ago
10.1186/1471-2229-12-29
Bioinformatic identification of cassava miRNAs differentially expressed in response to infection by Xanthomonas axonopodis pv. manihotisCited by: 56
Author(s): Álvaro L. Pérez‐Quintero, Andrés Quintero, Oscar Urrego, Pablo Vanegas, Camilo López
Software Mentions: 1
Published: over 12 years ago