Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.49658

https://doi.org/10.7554/eLife.49658

Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and m6A modification

Cited by: 278
Author(s): Matthew T Parker, Katarzyna Knop, Anna V. Sherwood, Nicholas J. Schurch, Katarzyna Mackinnon, Peter D Gould, Anthony Hall, Geoffrey J. Barton, Gordon G. Simpson
Published: almost 5 years ago

Software Mentions 7

bioconductor: edgeR

Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568

bioconductor: tximport

Import and summarize transcript-level estimates for transcript- and gene-level analysis
Papers that mentioned: 367

cran: STAR

Spike Train Analysis with R
Papers that mentioned: 5,759

pypi: cutadapt

Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562

pypi: pysam

Package for reading, manipulating, and writing genomic data
Papers that mentioned: 130

pypi: tools

Set of tools for web scraping projects
Papers that mentioned: 118

pypi: ushuffle

A Cython wrapper over uShuffle - a useful tool for shuffling biological sequences while preserving the k-let counts.
Papers that mentioned: 7