Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: humann2

https://packages.ecosyste.ms/registries/pypi.org/packages/humann2

HUMAnN2: The HMP Unified Metabolic Analysis Network 2
25 versions
Latest release: over 4 years ago
141 downloads last month

Papers Mentioning humann2 7

Effects of diet, habitat, and phylogeny on the fecal microbiome of wild African savanna (Loxodonta africana) and forest elephants (L. cyclotis)
Cited by: 16
Author(s): Kris Budd, Joe C. Gunn, Tabitha Finch, Katy E. Klymus, Noah Sitati, Lori S. Eggert
Software Mentions: 8
Published: over 4 years ago

10.1186/s13068-018-1036-9

Genome-resolved metagenomics of sugarcane vinasse bacteria
Cited by: 16
Author(s): Noriko A. Cassman, Késia Silva Lourenço, Janaína Braga do Carmo, Heitor Cantarella, Eiko E. Kuramae
Software Mentions: 6
Published: almost 7 years ago

10.1186/s12859-020-3404-2

IPCO: Inference of Pathways from Co-variance analysis
Cited by: 3
Author(s): Mrinmoy Das, Tarini Shankar Ghosh, Ian B. Jeffery
Software Mentions: 6
Published: almost 5 years ago

10.1080/19490976.2021.1897209

The high prevalence of Clostridioides difficile among nursing home elders associates with a dysbiotic microbiome
Cited by: 6
Author(s): John P. Haran, Doyle V. Ward, Shakti Bhattarai, Ethan Loew, Protiva Dutta, Amanda Higgins, Beth A. McCormick, Vanni Bucci
Software Mentions: 4
Published: almost 4 years ago

10.1128/mSystems.00070-16

Farnesoid X Receptor Signaling Shapes the Gut Microbiota and Controls Hepatic Lipid Metabolism
Cited by: 93
Author(s): Limin Zhang, Cen Xie, Robert G. Nichols, Siu Hung Joshua Chan, Changtao Jiang, Ruixin Hao, Philip B. Smith, Jingwei Cai, Margaret Simons, Emmanuel Hatzakis, Costas D. Maranas, Frank J. Gonzalez, Andrew D. Patterson
Software Mentions: 2
Published: about 8 years ago

10.1128/mSystems.00911-20

Strain-Level Analysis of Bifidobacterium spp. from Gut Microbiomes of Adults with Differing Lactase Persistence Genotypes
Cited by: 9
Author(s): Victor T. Schmidt, Hagay Enav, Timothy D. Spector, Nicholas D. Youngblut, Ruth E. Ley
Software Mentions: 2
Published: about 4 years ago

10.1002/mbo3.739

Metagenomic analysis of nitrogen‐cycling genes in upper Mississippi river sediment with mussel assemblages
Cited by: 9
Author(s): Ellen M. Black, Michael S. Chimenti, Craig L. Just
Software Mentions: 1
Published: about 6 years ago