cran: dplyr | Projects | Ecosyste.ms: Papers

10.5334/aogh.3278

Derivation of a Contextually-Appropriate COVID-19 Mortality Scale for Low-Resource Settings
Cited by: 5
Author(s): Jennifer L Pigoga, Yasein Omer, Lee Wallis
Software Mentions: 10
Published: over 3 years ago

10.1172/jci.insight.138970

Hypoxia acts as an environmental cue for the human tissue-resident memory T cell differentiation program
Cited by: 21
Author(s): Farah Hasan, Yulun Chiu, Rebecca Shaw, Junmei Wang, Cassian Yee
Software Mentions: 10
Published: over 3 years ago

10.1128/mSystems.00571-21

Pathogenic <i>Vibrio</i> Species Are Associated with Distinct Environmental Niches and Planktonic Taxa in Southern California (USA) Aquatic Microbiomes
Cited by: 11
Author(s): Rachel E. Diner, Drishti Kaul, Ariel Rabines, Hong Zheng, Joshua A. Steele, John F. Griffith, Andrew E. Allen
Software Mentions: 10
Published: about 3 years ago

10.1093/iob/obaa024

The Balance Hypothesis for the Avian Lumbosacral Organ and an Exploration of Its Morphological Variation
Cited by: 11
Author(s): Kathryn E Stanchak, C. French, David J. Perkel, Bingni W. Brunton
Software Mentions: 10
Published: almost 5 years ago

10.1128/mSphere.00743-20

Whole-Genome Sequence Analysis of an Extensively Drug-Resistant Salmonella enterica Serovar Agona Isolate from an Australian Silver Gull ( <i>Chroicocephalus novaehollandiae</i> ) Reveals the Acquisition of Multidrug Resistance Plasmids
Cited by: 17
Author(s): Max L. Cummins, Martina L. Sanderson-Smith, Peter Newton, Nicholas Carlile, David N. Phalen, Kimberly Maute, Leigh G. Monahan, Bethany J. Hoye, Steven P. Djordjevic
Software Mentions: 10
Published: almost 4 years ago

10.12688/f1000research.11997.1

valr: Reproducible genome interval analysis in R
Cited by: 43
Author(s): Kent Riemondy, Ryan M. Sheridan, Austin E. Gillen, Yinni Yu, Christopher Bennett, Jay R. Hesselberth
Software Mentions: 10
Published: over 7 years ago

10.1080/19336896.2020.1751574

Estimation of amyloid aggregate sizes with semi-denaturing detergent agarose gel electrophoresis and its limitations
Cited by: 10
Author(s): Polina Drozdova, Yury A. Barbitoff, М. В. Белоусов, Rostislav K. Skitchenko, Tatyana Rogoza, Jeremy Y Leclercq, Andrey V. Kajava, Andrew G. Matveenko, Galina A. Zhouravleva, Stanislav A. Bondarev
Software Mentions: 10
Published: almost 5 years ago

10.3390/pathogens9080628

Comparative Analysis of the Bacterial and Fungal Communities in the Gut and the Crop of Aedes albopictus Mosquitoes: A Preliminary Study
Cited by: 10
Author(s): Morgane Guégan, Edwige Martin, Claire Valiente Moro
Software Mentions: 9
Published: over 4 years ago

10.1038/s41598-021-92629-7

A cohort study to investigate sex-specific differences in ANCA-associated glomerulonephritis outcomes
Cited by: 8
Author(s): Jennifer Scott, Carolina Canepa, Antonia Buettner, Louise Ryan, Bróna Moloney, Sarah Cormican, Cathal Walsh, Arthur White, Alan D. Salama, Mark A. Little
Software Mentions: 9
Published: over 3 years ago

10.1186/s13071-017-2394-z

West Nile virus host-vector-pathogen interactions in a colonial raptor
Cited by: 6
Author(s): Zoltán Soltész, Károly Erdélyi, Tamás Bakonyi, Mónika Barna, Katalin Szentpáli-Gavallér, Szabolcs Solt, Éva Horváth, Péter Palatitz, László Kotymán, Ádám Dán, Lâszlö Papp, Andrea Harnos, Péter Fehérvári
Software Mentions: 9
Published: about 7 years ago

10.1186/s12889-020-09748-5

Co-occurrence across time and space of drug- and cannabinoid- exposure and adverse mental health outcomes in the National Survey of Drug Use and Health: combined geotemporospatial and causal inference analysis
Cited by: 18
Author(s): Albert Stuart Reece, Gary Kenneth Hulse
Software Mentions: 9
Published: about 4 years ago

10.12688/wellcomeopenres.14694.1

RhierBAPS: An R implementation of the population clustering algorithm hierBAPS
Cited by: 161
Author(s): Gerry Tonkin‐Hill, John A. Lees, Stephen D. Bentley, Simon D. W. Frost, Jukka Corander
Software Mentions: 9
Published: over 6 years ago

10.1186/s12859-020-03669-1

TRIP - T cell receptor/immunoglobulin profiler
Cited by: 11
Author(s): Maria Th. Kotouza, Katerina Gemenetzi, Chrysi Galigalidou, Elisavet Vlachonikola, Nikolaos Pechlivanis, Andreas Agathangelidis, Raphael Sandaltzopoulos, Pericles A. Mitkas, Kostas Stamatopoulos, Anastasia Chatzidimitriou, Fotis Psomopoulos
Software Mentions: 9
Published: about 4 years ago

10.1186/s12887-020-02431-z

Contemporary epidemiology of rising atrial septal defect trends across USA 1991–2016: a combined ecological geospatiotemporal and causal inferential study
Cited by: 28
Author(s): Albert Stuart Reece, Gary Kenneth Hulse
Software Mentions: 9
Published: almost 4 years ago

10.3390/v11100910

Host Range of Bacteriophages Against a World-Wide Collection of Erwinia amylovora Determined Using a Quantitative PCR Assay
Cited by: 14
Author(s): Steven Gayder, Michael Parcey, Alan J. Castle, A. M. Svircev
Software Mentions: 9
Published: about 5 years ago

10.1186/s40462-020-00218-6

Riders on the storm: loggerhead sea turtles detect and respond to a major hurricane in the Northwest Atlantic Ocean
Cited by: 5
Author(s): Leah M. Crowe, Joshua M. Hatch, Samir H. Patel, Ronald J. Smolowitz, Heather L. Haas
Software Mentions: 9
Published: over 4 years ago

10.1038/s41598-020-76603-3

VolcaNoseR is a web app for creating, exploring, labeling and sharing volcano plots
Cited by: 230
Author(s): Joachim Goedhart, Martijn S. Luijsterburg
Software Mentions: 9
Published: almost 4 years ago

10.1530/EC-21-0027

Tumor growth rate in pancreatic neuroendocrine tumor patients undergoing PRRT with 177Lu-DOTATATE
Cited by: 4
Author(s): Olof Pettersson, Katarzyna Fröss-Baron, Joakim Crona, Anders Sundín
Software Mentions: 9
Published: over 3 years ago

10.3389/fmicb.2020.587972

DNA-Stable Isotope Probing Shotgun Metagenomics Reveals the Resilience of Active Microbial Communities to Biochar Amendment in Oxisol Soil
Cited by: 11
Author(s): Julian Yu, Michael J. Pavia, Lauren M. Deem, Susan E. Crow, Jonathan Deenik, C. Ryan Penton
Software Mentions: 9
Published: about 4 years ago

10.1534/genetics.119.302662

Polygenic Adaptation to an Environmental Shift: Temporal Dynamics of Variation Under Gaussian Stabilizing Selection and Additive Effects on a Single Trait
Cited by: 47
Author(s): Kevin R. Thornton
Software Mentions: 9
Published: almost 5 years ago

10.3389/fmicb.2020.557253

Sixty-One Volatiles Have Phylogenetic Signals Across Bacterial Domain and Fungal Kingdom
Cited by: 16
Author(s): Moamen M. Elmassry, Mohamed A. Farag, Robert Preißner, Björn-Oliver Gohlke, Birgit Piechulla, Marie Chantal Lemfack
Software Mentions: 9
Published: about 4 years ago

10.3390/microorganisms9091814

Presence of Human Pathogens of the Borrelia burgdorferi sensu lato Complex Shifts the Sequence Read Abundances of Tick Microbiomes in Two German Locations
Cited by: 7
Author(s): Angeline Hoffmann, Thomas Müller, Volker Fingerle, Matthias Noll
Software Mentions: 9
Published: about 3 years ago

10.1016/j.celrep.2020.107732

Variable Outcomes in Neural Differentiation of Human PSCs Arise from Intrinsic Differences in Developmental Signaling Pathways
Cited by: 43
Author(s): Alessio Strano, Eleanor J. Tuck, Victoria Stubbs, Frederick J. Livesey
Software Mentions: 9
Published: over 4 years ago

10.1186/s12940-018-0417-7

Swimmer’s itch in Canada: a look at the past and a survey of the present to plan for the future
Cited by: 13
Author(s): Michelle A. Gordy, Tyler P. Cobb, Patrick C. Hanington
Software Mentions: 9
Published: about 6 years ago

10.3389/fnana.2018.00010

Cerebral Artery Diameter in Inbred Mice Varies as a Function of Strain
Cited by: 23
Author(s): Baogang Qian, Robert F. Rudy, Tianxi Cai, Rose Du
Software Mentions: 9
Published: almost 7 years ago

10.1371/journal.pone.0249102

The rodent object-in-context task: A systematic review and meta-analysis of important variables
Cited by: 5
Author(s): Milou S. C. Sep, Marijn Vellinga, R. Angela Sarabdjitsingh, Marian Joëls
Software Mentions: 9
Published: over 3 years ago

10.1534/g3.120.401436

The Wheat GENIE3 Network Provides Biologically-Relevant Information in Polyploid Wheat
Cited by: 18
Author(s): Sophie A Harrington, Anna E Backhaus, Ajit Singh, Keywan Hassani‐Pak, Cristóbal Uauy
Software Mentions: 9
Published: about 4 years ago

10.1371/journal.pone.0190195

Additional statistical and graphical methods for analyzing site formation processes using artifact orientations
Cited by: 39
Author(s): Shannon P. McPherron
Software Mentions: 9
Published: almost 7 years ago

10.1186/s13059-018-1597-8

plyranges: a grammar of genomic data transformation
Cited by: 62
Author(s): Stuart Lee, Dianne Cook, Michael C. Lawrence
Software Mentions: 9
Published: almost 6 years ago

10.1371/journal.pone.0226069

Short-term treatment with a peroxisome proliferator-activated receptor α agonist influences plasma one-carbon metabolites and B-vitamin status in rats
Cited by: 3
Author(s): Vegard Lysne, Bodil Bjørndal, Mari Lausund Grinna, Øivind Midttun, Per Magne Ueland, Rolf K. Berge, Jutta Dierkes, Ottar Nygård, Elin Strand
Software Mentions: 9
Published: almost 5 years ago

10.3390/metabo11040211

gcProfileMakeR: An R Package for Automatic Classification of Constitutive and Non-Constitutive Metabolites
Cited by: 3
Author(s): Fernando Pérez-Sánz, Victoria Ruiz-Hernández, Marta I. Terry, Sara Arce-Gallego, Julia Weiß, Pedro J. Navarro, Marcos Egea‐Cortines
Software Mentions: 9
Published: over 3 years ago

10.15252/emmm.202012850

Immunodynamics of explanted human tumors for immuno‐oncology
Cited by: 7
Author(s): Agathe Dubuisson, Jean-Eudes Fahrner, Anne-Gaëlle Goubet, Safae Terrisse, Nicolas Voisin, Charles Bayard, Sébastien Lofek, Damien Drubay, Delphine Bredel, Séverine Mouraud, Sandrine Susini, Alexandria P. Cogdill, Lucas Rebuffet, Elise Ballot, Nicolas Jacquelot, Vincent Thomas de Montpréville, Odile Casiraghi, C. Radulescu, Sophie Ferlicot, David J. Figueroa, Sapna Yadavilli, Jeremy D. Waight, Marc Ballas, Axel Hoos, Thomas Condamine, Bastien Parier, C. Gaudillat, Bertrand Routy, François Ghiringhelli, Lisa Derosa, Ingrid Breuskin, Mathieu Rouanne, Fabrice André, C. Lebâcle, H. Baumert, Marie Wislez, Élie Fadel, Isabelle Cremer, Laurence Albigès, Birgit Geoerger, Jean‐Yves Scoazec, Yohann Loriot, Guido Kroemer, Aurélien Marabelle, Mélodie Bonvalet, Laurence Zitvogel
Software Mentions: 9
Published: almost 4 years ago

10.3389/fpsyg.2020.599788

Faster Visual Information Processing in Video Gamers Is Associated With EEG Alpha Amplitude Modulation
Cited by: 5
Author(s): Yannik Hilla, Jörg von Mankowski, Julia Föcker, Paul Sauseng
Software Mentions: 9
Published: almost 4 years ago

10.1038/s41598-020-59292-w

Metaphylogenetic analysis of global sewage reveals that bacterial strains associated with human disease show less degree of geographic clustering
Cited by: 5
Author(s): Johanne Ahrenfeldt, Madina Waisi, Isabella Charlotte Loft, Philip Thomas Lanken Conradsen Clausen, Rosa Lundbye Allesøe, Judit Szarvas, René S. Hendriksen, Frank Møller Aarestrup, Ole Lund
Software Mentions: 9
Published: almost 5 years ago

10.1016/j.dib.2020.106651

Impact of malnutrition on survival in adult patients after elective cardiac surgery: Long-term follow up data
Cited by: 0
Author(s): Sergey Efremov, Tatiana Ionova, Tatiana Nikitina, Pavel E. Vedernikov, Timur Dzhumatov, Timofey S. Ovchinnikov, Abduvahhob A. Rashidov, Alexandr E Khomenko, Christian Stoppe, Daren K. Heyland, В. В. Ломиворотов
Software Mentions: 9
Published: almost 4 years ago

10.3390/ijms22073411

Insights of Phenolic Pathway in Fruits: Transcriptional and Metabolic Profiling in Apricot (Prunus armeniaca)
Cited by: 6
Author(s): Helena Gómez-Martínez, Francisco Gil-Muñoz, Almudena Bermejo, Elena Zuriaga, M. L. Badenes
Software Mentions: 9
Published: over 3 years ago

10.1186/s12936-020-3133-z

Influence of house characteristics on mosquito distribution and malaria transmission in the city of Yaoundé, Cameroon
Cited by: 10
Author(s): Carmène Sandra Ngadjeu, Patricia Doumbe-Belisse, Abdou Talipouo, Landre Djamouko-Djonkam, Parfait Awono-Ambene, Sévilor Kekeunou, Wilson Toussile, Charles S. Wondji, Christophe Antonio-Nkondjio
Software Mentions: 9
Published: almost 5 years ago

10.1371/journal.pone.0254491

Learning epistatic gene interactions from perturbation screens
Cited by: 2
Author(s): Kieran Elmes, Fabian Schmich, Ewa Szczurek, Jeremy L. Jenkins, Niko Beerenwinkel, Alex Gavryushkin
Software Mentions: 9
Published: over 3 years ago

10.2196/27163

Variation of Daily Care Demand in Swiss General Hospitals: Longitudinal Study on Capacity Utilization, Patient Turnover and Clinical Complexity Levels
Cited by: 5
Author(s): Narayan Sharma, René Schwendimann, Olga Endrich, Dietmar Ausserhofer, Michaël Simon
Software Mentions: 9
Published: over 3 years ago

10.1371/journal.pone.0247330

Prediction of femoral osteoporosis using machine-learning analysis with radiomics features and abdomen-pelvic CT: A retrospective single center preliminary study
Cited by: 18
Author(s): Hyun Lim, Hong Il Ha, Sun-Young Park, Junhee Han
Software Mentions: 9
Published: over 3 years ago

10.1186/s12864-019-5692-3

Expanding the biodiversity of Oenococcus oeni through comparative genomics of apple cider and kombucha strains
Cited by: 14
Author(s): Marc Lorentzen, Hugo Campbell-Sills, Tue Sparholt Jørgensen, Tue Kjærgaard Nielsen, Monika Coton, Emmanuel Coton, Lars Hansen, Patrick Lucas
Software Mentions: 9
Published: over 5 years ago

10.3389/fgene.2020.564301

Identification of Specific Circular RNA Expression Patterns and MicroRNA Interaction Networks in Mesial Temporal Lobe Epilepsy
Cited by: 10
Author(s): Lachlan G. Gray, James D. Mills, Ashton Curry‐Hyde, Sasha Devore, Daniel Friedman, Maria Thom, Catherine Scott, Roland D. Thijs, Eleonora Aronica, Orrin Devinsky, Michael Janitz
Software Mentions: 9
Published: about 4 years ago

10.1371/journal.pone.0220770

Characterizing the soil microbiome and quantifying antibiotic resistance gene dynamics in agricultural soil following swine CAFO manure application
Cited by: 40
Author(s): Edward Lopatto, Jinlyung Choi, Alfredo Colina, Lanying Ma, Adina Howe, Shannon M. Hinsa-Leasure
Software Mentions: 9
Published: over 5 years ago

10.3389/fpsyg.2019.02174

Expanding the Map of Intrinsic and Extrinsic Aspirations Using Network Analysis and Multidimensional Scaling: Examining Four New Aspirations
Cited by: 24
Author(s): Frank Martela, Emma L. Bradshaw, Richard M. Ryan
Software Mentions: 9
Published: about 5 years ago

10.3390/ani10040546

The Welfare Aggregation and Guidance (WAG) Tool: A New Method to Summarize Global Welfare Assessment Data for Equids
Cited by: 11
Author(s): Laura M Kubasiewicz, João B. Rodrigues, Stuart L. Norris, Tamlin Watson, Karen Rickards, Nikki Bell, Andrew Judge, Zoe Raw, Faith Burden
Software Mentions: 9
Published: over 4 years ago

10.3389/fpsyg.2018.02327

Use or Consequences: Probing the Cognitive Difference Between Two Measures of Divergent Thinking
Cited by: 44
Author(s): Richard W. Hass, Roger E. Beaty
Software Mentions: 9
Published: almost 6 years ago

10.7554/eLife.65905

Convergent organization of aberrant MYB complex controls oncogenic gene expression in acute myeloid leukemia
Cited by: 28
Author(s): Sumiko Takao, Lauren Forbes, Masahiro Uni, Shu‐Yuan Cheng, Jose Mario Bello Pineda, Yusuke Tarumoto, Paolo Cifani, Gerard Minuesa, Celine Chen, Michael G. Kharas, Robert K. Bradley, Christopher R. Vakoc, Richard P. Koche, Alex Kentsis
Software Mentions: 9
Published: almost 4 years ago

10.1186/s40575-021-00100-7

Dog breeds and body conformations with predisposition to osteosarcoma in the UK: a case-control study
Cited by: 13
Author(s): Grace Edmunds, Matthew J. Smalley, Sam Beck, Rachel J. Errington, Sara Gould, Helen Winter, David Brodbelt, Dan G. O’Neill
Software Mentions: 9
Published: over 3 years ago

10.3390/antiox10091424

S-Methyl-L-Ergothioneine to L-Ergothioneine Ratio in Urine Is a Marker of Cystine Lithiasis in a Cystinuria Mouse Model
Cited by: 2
Author(s): Miguel López de Heredia, Lourdes Muñoz, Ciriaco Carru, Salvatore Sotgia, Angelo Zinellu, C. Serra, Amadeu Llebaría, Yukio Kato, Virginia Nunes
Software Mentions: 9
Published: about 3 years ago

10.3389/fpls.2021.638738

Capturing and Selecting Senescence Variation in Wheat
Cited by: 11
Author(s): Elizabeth A. Chapman, Simon Orford, Jean-Luc Da Lage, Simon Griffiths
Software Mentions: 9
Published: over 3 years ago

10.1371/journal.pbio.3001276

Interplay between the cell envelope and mobile genetic elements shapes gene flow in populations of the nosocomial pathogen Klebsiella pneumoniae
Cited by: 37
Author(s): Matthieu Haudiquet, Amandine Nucci, Olaya Rendueles, Eduardo P. C. Rocha
Software Mentions: 9
Published: over 3 years ago

10.1098/rsos.160815

Concurrence in the ability for lipid synthesis between life stages in insects
Cited by: 20
Author(s): Bertanne Visser, Denis S. Willett, Jeffrey A. Harvey, Hans T. Alborn
Software Mentions: 9
Published: over 7 years ago

10.1371/journal.pbio.3000202

PlotsOfData—A web app for visualizing data together with their summaries
Cited by: 394
Author(s): Marten Postma, Joachim Goedhart
Software Mentions: 9
Published: over 5 years ago

10.3389/fphar.2020.607287

Netosis and Inflammasomes in Large Vessel Occlusion Thrombi
Cited by: 18
Author(s): Stephanie H. Chen, Xavier O. Scott, Yoandy Ferrer Marcelo, Vania W. Almeida, Patricia Blackwelder, Dileep R. Yavagal, Eric C. Peterson, Robert M. Starke, W. Dalton Dietrich, Robert W. Keane, Juan Pablo de Rivero Vaccari
Software Mentions: 9
Published: almost 4 years ago

10.1016/j.comppsych.2019.152143

Longitudinal population subgroups of CRP and risk of depression in the ALSPAC birth cohort
Cited by: 11
Author(s): Emanuele F. Osimo, Jan S̆tochl, Stanley Zammit, Glyn Lewis, Peter B. Jones, Golam M. Khandaker
Software Mentions: 9
Published: almost 5 years ago

10.2196/16442

Quality Awareness and Its Influence on the Evaluation of App Meta-Information by Physicians: Validation Study
Cited by: 8
Author(s): Urs‐Vito Albrecht, Theodor Framke, Ute von Jan
Software Mentions: 9
Published: about 5 years ago

10.1371/journal.pone.0247790

Parasitism and host behavior in the context of a changing environment: The Holocene record of the commercially important bivalve Chamelea gallina, northern Italy
Cited by: 3
Author(s): John Warren Huntley, Daniele Scarponi
Software Mentions: 9
Published: over 3 years ago

10.7717/peerj.7720

Estimating flowering transition dates from status-based phenological observations: a test of methods
Cited by: 11
Author(s): Shawn D. Taylor
Software Mentions: 9
Published: about 5 years ago

10.3389/fpls.2021.612843

Development and Validation of Methodology for Estimating Potato Canopy Structure for Field Crop Phenotyping and Improved Breeding
Cited by: 10
Author(s): Filipe Colwell, Jock Souter, Glenn Bryan, Lindsey Compton, Neil Boonham, Ankush Prashar
Software Mentions: 9
Published: almost 4 years ago

10.7717/peerj.9089

Resampling-based methods for biologists
Cited by: 35
Author(s): John Fieberg, Kelsey Vitense, Douglas H. Johnson
Software Mentions: 9
Published: over 4 years ago

10.3389/fneur.2020.01021

Medical Informatics Platform (MIP): A Pilot Study Across Clinical Italian Cohorts
Cited by: 10
Author(s): Alberto Redolfi, Silvia De Francesco, Fulvia Palesi, Samantha Galluzzi, Cristina Muscio, Gloria Castellazzi, Pietro Tiraboschi, Giovanni Savini, Anna Nigri, Gabriella Bottini, Maria Grazia Bruzzone, Matteo Cotta Ramusino, Stefania Ferraro, C Wheeler-Kingshott, Fabrizio Tagliavini, Giovanni B. Frisoni, Philippe Ryvlin, Jean-François Demonet, Ferath Kherif, Stefano F. Cappa, Egidio D’Angelo
Software Mentions: 9
Published: about 4 years ago

10.1371/journal.ppat.1009374

SARS-CoV-2 outbreak in a tri-national urban area is dominated by a B.1 lineage variant linked to a mass gathering event
Cited by: 31
Author(s): Madlen Stange, Alfredo Mari, Tim Roloff, Helena M. B. Seth-Smith, Michael Schweitzer, Myrta Brunner, Karoline Leuzinger, Kirstine Kobberøe Søgaard, Alexander Gensch, Sarah Tschudin‐Sutter, Simon Fuchs, Julia Bielicki, Hans Pargger, Martin Siegemund, Christian H. Nickel, Roland Bingisser, Michael Osthoff, Stefano Bassetti, Rita Schneider-Sliwa, Manuel Battegay, Hans H. Hirsch, Adrian Egli
Software Mentions: 9
Published: over 3 years ago

10.1371/journal.pone.0242826

Can post-capture photographic identification as a wildlife marking technique be undermined by observer error? A case study using King Cobras in northeast Thailand
Cited by: 0
Author(s): Max Dolton Jones, Benjamin Michael Marshall, Samantha Nicole Smith, Jack Taylor Christie, Surachit Waengsothorn, Taksin Artchawakom, Pongthep Suwanwaree, Colin Thomas Strine
Software Mentions: 9
Published: almost 4 years ago

10.1371/journal.ppat.1009577

Epigenomic regulation of human T-cell leukemia virus by chromatin-insulator CTCF
Cited by: 11
Author(s): Xiaogang Cheng, Ancy Joseph, Victor Castro, Alice Chen-Liaw, Zachary L. Skidmore, Takaharu Ueno, Jun–ichi Fujisawa, Daniel A. Rauch, Grant A. Challen, Michael P. Martinez, Patrick Green, Malachi Griffith, Jacqueline E. Payton, John Edwards, Lee Ratner
Software Mentions: 9
Published: over 3 years ago

10.1038/s41396-019-0416-x

Variability in snake skin microbial assemblages across spatial scales and disease states
Cited by: 19
Author(s): Donald M. Walker, Jacob E. Leys, Matthew Grisnik, Alejandro Grajal-Puche, Christopher M. Murray, Matthew C. Allender
Software Mentions: 9
Published: over 5 years ago

10.1371/journal.pone.0224186

Studying global processing in autism and attention-deficit/hyperactivity disorder with gaze movements: The example of a copying task
Cited by: 2
Author(s): Divya Seernani, Chara Ioannou, K. Damania, Kurt P. Spindler, Holger Hill, Tom Foulsham, Nikolaos Smyrnis, Stephan Bender, Christian Fleischhaker, Monica Biscaldi, Ulrich W. Ebner‐Priemer, Christoph Klein
Software Mentions: 9
Published: over 4 years ago

10.1186/s12859-016-1442-6

Unboxing cluster heatmaps
Cited by: 25
Author(s): Sophie Engle, Sean Whalen, Alark Joshi, Katherine S. Pollard
Software Mentions: 9
Published: almost 8 years ago

10.7717/peerj.4473

pcr: an R package for quality assessment, analysis and testing of qPCR data
Cited by: 72
Author(s): Mahmoud Ahmed, Deok Ryong Kim
Software Mentions: 9
Published: over 6 years ago

10.1128/mBio.00399-21

Salmonella enterica Serovar Typhimurium SPI-1 and SPI-2 Shape the Global Transcriptional Landscape in a Human Intestinal Organoid Model System
Cited by: 12
Author(s): Anna-Lisa E. Lawrence, Basel H. Abuaita, Ryan P. Berger, David R. Hill, Sha Huang, Veda K. Yadagiri, Brooke Bons, Courtney Fields, Christiane E. Wobus, Jason R. Spence, Vincent B. Young, Mary X. O’Riordan
Software Mentions: 9
Published: over 3 years ago

10.1186/s13040-021-00267-6

eQTpLot: a user-friendly R package for the visualization of colocalization between eQTL and GWAS signals
Cited by: 11
Author(s): Theodore G. Drivas, Anastasia Lucas, Marylyn D. Ritchie
Software Mentions: 9
Published: over 3 years ago

10.7717/peerj.3580

The influence of mortality and socioeconomic status on risk and delayed rewards: a replication with British participants
Cited by: 14
Author(s): Gillian Pepper, Deirdre Corby, Rachel Bamber, Holly Smith, Nicky Wong, Daniel Nettle
Software Mentions: 9
Published: over 7 years ago

10.1093/jamiaopen/ooy059

ROMOP: a light-weight R package for interfacing with OMOP-formatted electronic health record data
Cited by: 12
Author(s): Benjamin S. Glicksberg, Boris Oskotsky, Nicholas Giangreco, Phyllis Thangaraj, Vivek Rudrapatna, Debajyoti Datta, Remi Frazier, Nelson Lee, Rick Larsen, Nicholas P. Tatonetti, Atul J. Butte
Software Mentions: 9
Published: almost 6 years ago

10.1038/s41598-020-72007-5

Individual differences in fear acquisition: multivariate analyses of different emotional negativity scales, physiological responding, subjective measures, and neural activation
Cited by: 30
Author(s): Rachel Sjouwerman, Robert Scharfenort, Tina B. Lonsdorf
Software Mentions: 9
Published: about 4 years ago

10.1128/mSystems.00815-20

Traditional Human Populations and Nonhuman Primates Show Parallel Gut Microbiome Adaptations to Analogous Ecological Conditions
Cited by: 11
Author(s): Ashok Sharma, Klára J. Petrželková, Barbora Pafčo, Carolyn A. Jost Robinson, Terence Fuh, Brenda A. Wilson, Rebecca M. Stumpf, Manolito Torralba, Ran Blekhman, Bryan A. White, Karen E. Nelson, Steven R. Leigh, Andrés Gómez
Software Mentions: 9
Published: almost 4 years ago

10.3389/fmolb.2019.00005

Alternative Splicing of MXD3 and Its Regulation of MXD3 Levels in Glioblastoma
Cited by: 10
Author(s): Tin Ngo, Abraham Corrales, Traci Bourne, Samir Elmojahid, Kit S. Lam, Elizabeth Díaz
Software Mentions: 8
Published: almost 6 years ago

10.3389/fmolb.2021.657087

N6-Methyladenosine RNA Methylation Regulator-Related Alternative Splicing (AS) Gene Signature Predicts Non–Small Cell Lung Cancer Prognosis
Cited by: 16
Author(s): Zhenyu Zhao, Qidong Cai, Peng-Fei Zhang, Boxue He, Ping Xiong, Guangxu Tu, Weilin Peng, Li Wang, Fenglei Yu, Xiang Wang
Software Mentions: 8
Published: over 3 years ago

10.1186/s12859-020-3389-x

ushr: Understanding suppression of HIV in R
Cited by: 3
Author(s): Sinead E. Morris, Luise Dziobek-Garrett, Andrew J. Yates
Software Mentions: 8
Published: almost 5 years ago

10.3389/fmolb.2021.655126

Silencing of the TRIM58 Gene by Aberrant Promoter Methylation is Associated with a Poor Patient Outcome and Promotes Cell Proliferation and Migration in Clear Cell Renal Cell Carcinoma
Cited by: 6
Author(s): Ying Gan, Congcong Cao, Aolin Li, Haifeng Song, Guanyu Kuang, Binglei Ma, Quan Zhang, Qian Zhang
Software Mentions: 8
Published: over 3 years ago

10.1007/s00787-020-01535-2

Visual search in ADHD, ASD and ASD + ADHD: overlapping or dissociating disorders?
Cited by: 13
Author(s): Divya Seernani, K. Damania, Chara Ioannou, N. Penkalla, Holger Hill, Tom Foulsham, Alan Kingstone, Nicola Anderson, Giuseppe Boccignone, Stephan Bender, N. Smyrnis, Monica Biscaldi, Ulrich W. Ebner‐Priemer, Christoph Klein
Software Mentions: 8
Published: over 4 years ago

10.1186/s12889-021-10979-3

Associations of meeting 24-h movement guidelines with stress and self-rated health among adults: is meeting more guidelines associated with greater benefits?
Cited by: 16
Author(s): Kaja Kastelic, Željko Pedišić, Dean Lipovac, Nika Kastelic, Sitong Chen, Nejc Šarabon
Software Mentions: 8
Published: over 3 years ago

10.1080/16549716.2018.1440783

Health Equity Assessment Toolkit Plus (HEAT Plus): software for exploring and comparing health inequalities using uploaded datasets
Cited by: 42
Author(s): Ahmad Reza Hosseinpoor, Anne Schlotheuber, Devaki Nambiar, Zev Ross
Software Mentions: 8
Published: over 6 years ago

10.1038/s41598-021-88139-1

Age biases the judgment rather than the perception of an ambiguous figure
Cited by: 1
Author(s): Ambroos Brouwer, Xuxi Jin, Aisha Humaira Waldi, Steven Verheyen
Software Mentions: 8
Published: over 3 years ago

10.3390/ani10061047

A Systematic Review Comparing Experimental Design of Animal and Human Methotrexate Efficacy Studies for Rheumatoid Arthritis: Lessons for the Translational Value of Animal Studies
Cited by: 8
Author(s): Cathalijn Leenaars, Frans Stafleu, David De Jong, Maikel van Berlo, Tijmen Geurts, Tineke Coenen-de Roo, Jan–Bas Prins, Rosalie W.M. Kempkes, Janneke Elzinga, André Bleich, Rob de Vries, F.L.B. Meijboom, Merel Ritskes‐Hoitinga
Software Mentions: 8
Published: over 4 years ago

10.3389/fmicb.2018.00570

SIPSim: A Modeling Toolkit to Predict Accuracy and Aid Design of DNA-SIP Experiments
Cited by: 37
Author(s): Nicholas D. Youngblut, Samuel E. Barnett, Daniel H. Buckley
Software Mentions: 8
Published: over 6 years ago

10.1186/s13072-020-00353-9

Distinct and overlapping roles of STAG1 and STAG2 in cohesin localization and gene expression in embryonic stem cells
Cited by: 20
Author(s): Nicole L. Arruda, Zachary Carico, Megan Justice, Ying Frances Liu, Junjie Zhou, Holden C. Stefan, Jill M. Dowen
Software Mentions: 8
Published: over 4 years ago

10.1186/s40795-021-00428-0

Weight and mid-upper arm circumference gain velocities during treatment of young children with severe acute malnutrition, a prospective study in Uganda
Cited by: 4
Author(s): Jolly G. K. Kamugisha, Betty Lanyero, Nicolette Nabukeera-Barungi, Harriet Nambuya-Lakor, Christian Ritz, Christian Mølgaard, Kim F. Michaelsen, André Briend, Ezekiel Mupere, Henrik Friis, Benedikte Grenov
Software Mentions: 8
Published: over 3 years ago

10.3390/v11060492

Culex torrentium: A Potent Vector for the Transmission of West Nile Virus in Central Europe
Cited by: 33
Author(s): Stéphanie Jansen, Anna Heitmann, Renke Lühken, Mayke Leggewie, Michelle Helms, Marlis Badusche, Giada Rossini, Jonas Schmidt‐Chanasit, Egbert Tannich
Software Mentions: 8
Published: over 5 years ago

10.3390/ani10112097

Supplementing Northern Australian Beef Cattle with Desmanthus Tropical Legume Reduces In-Vivo Methane Emissions
Cited by: 16
Author(s): Bénédicte Suybeng, E. Charmley, Christopher Gardiner, Bunmi S. Malau‐Aduli, A.E.O. Malau‐Aduli
Software Mentions: 8
Published: about 4 years ago

10.3389/fmolb.2021.675683

Targeted Demethylation of the PLOD2 mRNA Inhibits the Proliferation and Migration of Renal Cell Carcinoma
Cited by: 9
Author(s): Congcong Cao, Qian Ma, Xinbo Huang, Aolin Li, Jun Li, Jing Ye, Yaoting Gui
Software Mentions: 8
Published: over 3 years ago

10.1038/s41598-021-83888-5

A novel approach for microRNA in situ hybridization using locked nucleic acid probes
Cited by: 6
Author(s): Isabella Worlewenut Paulsen, Micheal Bzorek, John Elmerdahl Olsen, Birgitte Grum-Schwensen, Jesper T. Troelsen, Ole Birger Pedersen
Software Mentions: 8
Published: over 3 years ago

10.3390/tropicalmed6010028

Knowledge and Perception of Rabies among School Children in Rabies Endemic Areas of South Bhutan
Cited by: 4
Author(s): Lungten Lungten, Sangay Rinchen, Tenzin Tenzin, Waraphon Phimpraphai, Michel De Garine‐Wichatitsky
Software Mentions: 8
Published: over 3 years ago

10.3390/molecules26123564

Differential Glycosite Profiling—A Versatile Method to Compare Membrane Glycoproteomes
Cited by: 0
Author(s): Malwina Michalak, Martin Simon Kalteis, Aysel Ahadova, Matthias Kloor, Mark Kriegsmann, Katharina Kriegsmann, Uwe Warnken, Dominic Helm, Jürgen Kopitz
Software Mentions: 8
Published: over 3 years ago

10.3390/ani10050889

Combination of Bacillus licheniformis and Salinomycin: Effect on the Growth Performance and GIT Microbial Populations of Broiler Chickens
Cited by: 15
Author(s): Jacek Trela, Bartosz Kierończyk, Veerle Hautekiet, Damian Józefiak
Software Mentions: 8
Published: over 4 years ago

10.1038/s41598-020-74139-0

Statistical models for identifying frequent hitters in high throughput screening
Cited by: 4
Author(s): Samuel Goodwin, Golnaz Shahtahmassebi, Quentin S. Hanley
Software Mentions: 8
Published: about 4 years ago

10.1186/s13059-020-01998-1

Wheat chromatin architecture is organized in genome territories and transcription factories
Cited by: 89
Author(s): Lorenzo Concia, Alaguraj Veluchamy, Juan S. Ramirez-Prado, Azahara Martin-Ramirez, Ying Huang, Magali Perez, Séverine Domenichini, Natalia Y. Rodriguez Granados, Soon-Kap Kim, Thomas Blein, Susan Duncan, Clement Pichot, Deborah Manza‐Mianza, Caroline Juéry, Etienne Paux, Graham Moore, Heribert Hirt, Catherine Bergounioux, Martín Crespi, Magdy M. Mahfouz, Abdelhafid Bendahmane, Chang Liu, Anthony Hall, Cécile Raynaud, David Latrasse, Moussa Benhamed
Software Mentions: 8
Published: over 4 years ago

10.1002/dad2.12066

Semantic loss marks early Alzheimer's disease‐related neurodegeneration in older adults without dementia
Cited by: 20
Author(s): Jet M.J. Vonk, Vincent Bouteloup, Jean‐François Mangin, Bruno Dubois, ‪Frederic Blanc‬, Audrey Gabelle, Mathieu Ceccaldi, Cédric Annweiler, Pierre Krolak‐Salmon, Cathérine Belin, Thérèse Rivasseau‐Jonveaux, Adrien Julian, François Sellal, Éloi Magnin, Marie Chupin, Marie‐Odile Habert, Geneviève Chêne, Carole Dufouil
Software Mentions: 8
Published: almost 5 years ago

10.1186/s13059-020-02155-4

Estimating the quality of eukaryotic genomes recovered from metagenomic analysis with EukCC
Cited by: 51
Author(s): Paul Saary, Alex L. Mitchell, Alex Bateman
Software Mentions: 8
Published: about 4 years ago

10.1093/gigascience/giz092

Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance
Cited by: 112
Author(s): Alexander M. Piper, Jana Batovska, Noel O. I. Cogan, John Weiss, John Paul Cunningham, Brendan Rodoni, Mark J. Blacket
Software Mentions: 8
Published: over 5 years ago

10.3389/fmicb.2021.728479

Cross-Sectional Study on the Gut Microbiome of Parkinson’s Disease Patients in Central China
Cited by: 11
Author(s): Liangwei Mao, Yu Zhang, Jing Tian, Ming Sang, Guimin Zhang, Yiming Zhou, Puqing Wang
Software Mentions: 8
Published: about 3 years ago

10.3390/genes12030444

Genome Analysis of Endotrypanum and Porcisia spp., Closest Phylogenetic Relatives of Leishmania, Highlights the Role of Amastins in Shaping Pathogenicity
Cited by: 9
Author(s): Amanda T S Albanaz, Evgeny S. Gerasimov, Jeffrey Jon Shaw, Jovana Sádlová, Julius Lukeš, Petr Volf, Frederik Opperdoes, Alexei Y. Kostygov, Anzhelika Butenko, Vyacheslav Yurchenko
Software Mentions: 8
Published: over 3 years ago

Projects: cran: dplyr

Papers Mentioning dplyr 1,213