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Papers: 10.1186/s13059-020-02155-4

https://doi.org/10.1186/s13059-020-02155-4

Estimating the quality of eukaryotic genomes recovered from metagenomic analysis with EukCC

Cited by: 51
Author(s): Paul Saary, Alex L. Mitchell, Alex Bateman
Published: almost 5 years ago

Software Mentions 8

bioconductor: ComplexHeatmap
Make Complex Heatmaps
Papers that mentioned: 565
Very Likely Science (90)
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
Very Likely Science (100)
cran: klaR
Classification and Visualization
Papers that mentioned: 33
Very Likely Science (85)
pypi: ensembl
Ensembl REST API Client
Papers that mentioned: 212
Very Likely Science (65)
pypi: EukRep
Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets
Papers that mentioned: 14
Very Likely Science (100)
pypi: ggplot
ggplot for python
Papers that mentioned: 796
Very Likely Science (100)
pypi: hmmer
HMMER binaries.
Papers that mentioned: 196
Very Likely Science (90)
pypi: pygmes
Run GeneMark-ES using pretrained models
Papers that mentioned: 1
Very Likely Science (85)