Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-020-02155-4

https://doi.org/10.1186/s13059-020-02155-4

Estimating the quality of eukaryotic genomes recovered from metagenomic analysis with EukCC

Cited by: 51
Author(s): Paul Saary, Alex L. Mitchell, Alex Bateman
Published: about 4 years ago

Software Mentions 8

bioconductor: ComplexHeatmap
Make Complex Heatmaps
Papers that mentioned: 565
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: klaR
Classification and Visualization
Papers that mentioned: 33
pypi: ensembl
Ensembl REST API Client
Papers that mentioned: 212
pypi: EukRep
Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets
Papers that mentioned: 14
pypi: ggplot
ggplot for python
Papers that mentioned: 796
pypi: hmmer
HMMER binaries.
Papers that mentioned: 196
pypi: pygmes
Run GeneMark-ES using pretrained models
Papers that mentioned: 1