Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.ppat.1009374

https://doi.org/10.1371/journal.ppat.1009374

SARS-CoV-2 outbreak in a tri-national urban area is dominated by a B.1 lineage variant linked to a mass gathering event

Cited by: 31
Author(s): Madlen Stange, Alfredo Mari, Tim Roloff, Helena M. B. Seth-Smith, Michael Schweitzer, Myrta Brunner, Karoline Leuzinger, Kirstine Kobberøe Søgaard, Alexander Gensch, Sarah Tschudin‐Sutter, Simon Fuchs, Julia Bielicki, Hans Pargger, Martin Siegemund, Christian H. Nickel, Roland Bingisser, Michael Osthoff, Stefano Bassetti, Rita Schneider-Sliwa, Manuel Battegay, Hans H. Hirsch, Adrian Egli
Published: over 3 years ago

Software Mentions 9

bioconductor: Gviz
Plotting data and annotation information along genomic coordinates
Papers that mentioned: 134
bioconductor: Sushi
Papers that mentioned: 18
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: readr
Read Rectangular Text Data
Papers that mentioned: 80
cran: seqinr
Biological Sequences Retrieval and Analysis
Papers that mentioned: 110
cran: SpadeR
Species-Richness Prediction and Diversity Estimation with R
Papers that mentioned: 13
cran: tidyr
Tidy Messy Data
Papers that mentioned: 321
pypi: TreeTime
TreeTime is a to-do list manager, test report tool, project manager, family ancestry editor,mind-mapping tool, etc. Using TreeTime you can categorise and organise any data in tree structures.You can define several trees, each with a different structure, on the same data. You can use functions(sums, ratios and means) recursively up the branches of a tree.
Papers that mentioned: 82