Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12864-019-5692-3

https://doi.org/10.1186/s12864-019-5692-3

Cited by: 14
Author(s): Marc Lorentzen, Hugo Campbell-Sills, Tue Sparholt Jørgensen, Tue Kjærgaard Nielsen, Monika Coton, Emmanuel Coton, Lars Hansen, Patrick Lucas
Published: about 5 years ago

Software Mentions 9

bioconductor: Biostrings

Efficient manipulation of biological strings
Papers that mentioned: 220

bioconductor: ggtree

an R package for visualization of tree and annotation data
Papers that mentioned: 474

bioconductor: MIRA

Methylation-Based Inference of Regulatory Activity
Papers that mentioned: 856

cran: dendextend

Extending 'dendrogram' Functionality in R
Papers that mentioned: 201

cran: dplyr

A Grammar of Data Manipulation
Papers that mentioned: 1,213

cran: gplots

Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122

cran: phangorn

Phylogenetic Reconstruction and Analysis
Papers that mentioned: 192

cran: RColorBrewer

ColorBrewer Palettes
Papers that mentioned: 490

pypi: pyani

pyani provides a package and script for calculation of genome-scale average nucleotide identity.
Papers that mentioned: 120