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Papers: 10.1186/s12864-019-5692-3

https://doi.org/10.1186/s12864-019-5692-3

Expanding the biodiversity of Oenococcus oeni through comparative genomics of apple cider and kombucha strains

Cited by: 14
Author(s): Marc Lorentzen, Hugo Campbell-Sills, Tue Sparholt Jørgensen, Tue Kjærgaard Nielsen, Monika Coton, Emmanuel Coton, Lars Hansen, Patrick Lucas
Published: over 7 years ago

Software Mentions 9

bioconductor: Biostrings
Efficient manipulation of biological strings
Papers that mentioned: 220
Very Likely Science (65)
bioconductor: ggtree
an R package for visualization of tree and annotation data
Papers that mentioned: 474
Very Likely Science (100)
bioconductor: MIRA
Methylation-Based Inference of Regulatory Activity
Papers that mentioned: 856
Very Likely Science (98)
cran: dendextend
Extending 'dendrogram' Functionality in R
Papers that mentioned: 201
Very Likely Science (100)
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
Very Likely Science (100)
cran: gplots
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
Very Likely Science (85)
cran: phangorn
Phylogenetic Reconstruction and Analysis
Papers that mentioned: 192
Very Likely Science (100)
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490
Very Likely Science (83)
pypi: pyani
pyani provides a package and script for calculation of genome-scale average nucleotide identity.
Papers that mentioned: 120
Very Likely Science (100)