Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: dplyr

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/dplyr

A Grammar of Data Manipulation
44 versions
Latest release: 9 months ago
4,296 dependent packages
1,769,606 downloads last month

Papers Mentioning dplyr 1,213

10.1111/test.12258
Some teaching resources using R with illustrative examples exploring COVID ‐19 data
Cited by: 0
Author(s): Arthur Berg, Nour Hawila
Software Mentions: 12
Published: almost 3 years ago
10.3390/toxins12070433
Low Doses of Mycotoxin Mixtures below EU Regulatory Limits Can Negatively Affect the Performance of Broiler Chickens: A Longitudinal Study
Cited by: 26
Author(s): Oluwatobi Kolawole, A. Graham, Caroline Julie Donaldson, B. Owens, Wilfred A. Abia, Julie Meneely, M. Alcorn, Lisa Connolly, Chris Elliott
Software Mentions: 12
Published: almost 4 years ago
10.26508/lsa.202000770
In vivo CRISPR/Cas9 knockout screen: TCEAL1 silencing enhances docetaxel efficacy in prostate cancer
Cited by: 12
Author(s): Linda Rushworth, Victoria Harle, Peter Repiščák, William Clark, Robin Shaw, Holly Hall, Martin Bushell, Hing Y. Leung, Rachana Patel
Software Mentions: 12
Published: over 3 years ago
10.1093/aobpla/plz054
tealeaves: an R package for modelling leaf temperature using energy budgets
Cited by: 26
Author(s): Christopher D. Muir
Software Mentions: 12
Published: over 4 years ago
10.1016/j.immuni.2021.05.010
Longitudinal analysis reveals that delayed bystander CD8+ T cell activation and early immune pathology distinguish severe COVID-19 from mild disease
Cited by: 188
Author(s): Laura Bergamaschi, Federica Mescia, Lorinda Turner, Aimee L. Hanson, Prasanti Kotagiri, Benjamin J. Dunmore, Hélène Ruffieux, Aloka De, Oisín Huhn, Michael D. Morgan, Pehuén Pereyra Gerber, Mark R. Wills, Stephen Baker, Fernando J Calero-Nieto, Rainer Döffinger, Gordon Dougan, Anne Elmer, Ian Goodfellow, Ravindra Gupta, Myra Hosmillo, Kelvin Hunter, Nathalie Kingston, Paul J. Lehner, Nicholas J Matheson, Jeremy K. Nicholson, A. M. Petrunkina, Sylvia Richardson, Caroline Saunders, James Thaventhiran, Erik J. M. Toonen, Michael P. Weekes, Berthold Göttgens, Mark Toshner, Christoph Hess, John R. Bradley, Paul Lyons, Kenneth Smith
Software Mentions: 12
Published: almost 3 years ago
10.1371/journal.pone.0156293
Cryopreservation of Human Mucosal Leukocytes
Cited by: 14
Author(s): Sean M. Hughes, Zhiquan Shu, Claire Levy, April L. Ferre, Heather Hartig, Cifeng Fang, Gretchen M. Lentz, Michael Fialkow, Anna C. Kirby, Kristina M. Adams Waldorf, Ronald S. Veazey, Anja Germann, Hagen von Briesen, M. Juliana McElrath, Charlene S. Dezzutti, Elizabeth Sinclair, Chris A. R. Baker, Barbara L. Shacklett, Dayong Gao, Florian Hladik
Software Mentions: 12
Published: almost 8 years ago
10.3390/insects11080535
Impacts of Dietary Nutritional Composition on Larval Development and Adult Body Composition in the Yellow Fever Mosquito (Aedes aegypti)
Cited by: 15
Author(s): Tess van Schoor, Erin Taylor Kelly, Nicole Tam, Geoffrey M. Attardo
Software Mentions: 12
Published: almost 4 years ago
10.1002/ece3.7972
Elevated temperature increases reproductive investment in less preferred mates in the invasive European corn borer moth
Cited by: 4
Author(s): Arielle N. Enos, Genevieve M. Kozak
Software Mentions: 12
Published: almost 3 years ago
10.1093/gigascience/giz088
PathwayMatcher: proteoform-centric network construction enables fine-granularity multiomics pathway mapping
Cited by: 5
Author(s): Luis Francisco Hernández Sánchez, Bram Burger, Carlos Horro, Antonio Fabregat, Stefan Johansson, Pål Rasmus Njølstad, Harald Barsnes, Henning Hermjakob, Marc Vaudel
Software Mentions: 12
Published: almost 5 years ago
10.1038/s41598-021-86989-3
Stability and individual variability of social attachment in imprinting
Cited by: 15
Author(s): Bastien S. Lemaire, Daniele Rucco, Mathilde Josserand, Giorgio Vallortígara, Elisabetta Versace
Software Mentions: 12
Published: about 3 years ago
10.1155/2021/6656926
The Preference, Effect, and Prognosis of Intra-Aortic Balloon Counterpulsation in Acute Myocardial Infarction Complicated by Cardiogenic Shock Patients: A Retrospective Cohort Study
Cited by: 0
Author(s): Wenjun Wang, Fang Yang, Xixiang Lin, Qin Zhong, Zongren Li, Xu Chen, Junfeng Wang, Kunlun He
Software Mentions: 12
Published: over 3 years ago
10.1186/s13059-018-1563-5
CRISPRO: identification of functional protein coding sequences based on genome editing dense mutagenesis
Cited by: 27
Author(s): Vivien A.C. Schoonenberg, Mitchel A Cole, Qiuming Yao, Claudio Macias-Treviño, Falak Sher, Patrick G. Schupp, Matthew C. Canver, Takahiro Maeda, Luca Pinello, Daniel E. Bauer
Software Mentions: 12
Published: over 5 years ago
10.1038/s41598-020-73812-8
Synbiotic feed supplementation significantly improves lipid utilization and shows discrete effects on disease resistance in rainbow trout (Oncorhynchus mykiss)
Cited by: 10
Author(s): Kasper Rømer Villumsen, Maki Ohtani, Torunn Forberg, Elisabeth Aasum, John Tinsley, Anders Miki Bojesen
Software Mentions: 12
Published: over 3 years ago
10.7717/peerj.9850
lcc: an R package to estimate the concordance correlation, Pearson correlation and accuracy over time
Cited by: 5
Author(s): Thiago Pires Oliveira, Rafael de Andrade Moral, Sílvio Sandoval Zocchi, Clarice Garcia Borges Demétrio, John Hinde
Software Mentions: 12
Published: over 3 years ago
10.1534/g3.120.401527
rdmc: An Open Source R Package Implementing Convergent Adaptation Models of Lee and Coop (2017)
Cited by: 2
Author(s): Silas Tittes
Software Mentions: 12
Published: over 3 years ago
10.1038/s41598-020-69239-w
Neural innervation as a potential trigger of morphological color change and sexual dimorphism in cichlid fish
Cited by: 14
Author(s): Yipeng Liang, Axel Meyer, Claudius F. Kratochwil
Software Mentions: 12
Published: almost 4 years ago
10.3897/BDJ.4.e8357
Optimized R functions for analysis of ecological community data using the R virtual laboratory (RvLab)
Cited by: 12
Author(s): Constantinos Varsos, Theodore Patkos, Anastasis Oulas, Christina Pavloudi, Alexandros Gougousis, Umer Zeeshan Ijaz, Irene Filiopoulou, Nikolaos Pattakos, E. Vanden Berghe, Antonio Fernàndez-Guerra, Sarah Faulwetter, Eva Chatzinikolaou, Evangelos Pafilis, Chryssoula Bekiari, Martin Doerr, Christos Arvanitidis
Software Mentions: 12
Published: over 7 years ago
10.1371/journal.pcbi.1008991
Memes: A motif analysis environment in R using tools from the MEME Suite
Cited by: 22
Author(s): Spencer L. Nystrom, Daniel J. McKay
Software Mentions: 12
Published: over 2 years ago
10.1186/s12974-021-02235-7
Sex differences and similarities in the neuroimmune response to central administration of poly I:C
Cited by: 14
Author(s): Caitlin K. Posillico, Rosa E. Garcia-Hernandez, Natalie C. Tronson
Software Mentions: 12
Published: over 2 years ago
10.3390/ani11040961
Grumpy Dogs Are Smart Learners—The Association between Dog–Owner Relationship and Dogs’ Performance in a Social Learning Task
Cited by: 8
Author(s): Péter Pongrácz, Gabriella Rieger, Kata Vékony
Software Mentions: 11
Published: about 3 years ago
10.3390/plants8120547
New Insights on Lilium Phylogeny Based on a Comparative Phylogenomic Study Using Complete Plastome Sequences
Cited by: 12
Author(s): Hyoung Tae Kim, Ki-Byung Lim, Jung Sung Kim
Software Mentions: 11
Published: over 4 years ago
10.3389/fpls.2020.01132
Intra and Inter-specific Variability of Salt Tolerance Mechanisms in Diospyros Genus
Cited by: 3
Author(s): Francisco Gil-Muñoz, Juan G. Pérez-Pérez, Ana Quiñones, María del Mar Naval, M. L. Badenes
Software Mentions: 11
Published: almost 4 years ago
10.7554/eLife.62147
Role of matrix metalloproteinase-9 in neurodevelopmental deficits and experience-dependent plasticity in Xenopus laevis
Cited by: 6
Author(s): Sayali V Gore, Eric J. James, Lin-Chien Huang, Jenn J Park, Andrea Berghella, Adrian C. Thompson, Hollis T. Cline, Carlos D. Aizenman
Software Mentions: 11
Published: almost 3 years ago
10.1186/s41235-018-0133-4
App icon similarity and its impact on visual search efficiency on mobile touch devices
Cited by: 5
Author(s): Anna Trapp, Carolin Wienrich
Software Mentions: 11
Published: over 5 years ago
10.12688/wellcomeopenres.15477.2
Feasibility of informing syndrome-level empiric antibiotic recommendations using publicly available antibiotic resistance datasets
Cited by: 5
Author(s): Quentin J. Leclerc, Nichola R. Naylor, Alexander M. Aiken, Francesc Español i Coll, Gwenan M. Knight
Software Mentions: 11
Published: almost 4 years ago
10.1371/journal.pone.0242728
Video kills the sentiment—Exploring fans’ reception of the video assistant referee in the English premier league using Twitter data
Cited by: 10
Author(s): Otto Kolbinger, Melanie Knopp
Software Mentions: 11
Published: over 3 years ago
10.7554/eLife.49064
Stepwise polarisation of developing bilayered epidermis is mediated by aPKC and E-cadherin in zebrafish
Cited by: 10
Author(s): Prateek Arora, Shivali Dongre, Renuka Raman, Mahendra Sonawane
Software Mentions: 11
Published: over 4 years ago
10.3389/fphys.2020.00845
Dynamic Courtship Signals and Mate Preferences in Sepia plangon
Cited by: 5
Author(s): Alejandra López Galán, Wen-Sung Chung, N. Justin Marshall
Software Mentions: 11
Published: almost 4 years ago
10.3389/fonc.2021.614052
MRI Radiomics Signature as a Potential Biomarker for Predicting KRAS Status in Locally Advanced Rectal Cancer Patients
Cited by: 9
Author(s): Zhiyuan Zhang, Lijun Shen, Yan Wang, Jiazhou Wang, Hui Zhang, Xuesen Fan, Juefeng Wan
Software Mentions: 11
Published: about 3 years ago
10.1038/s41598-020-59494-2
Unstable crop yields reveal opportunities for site-specific adaptations to climate variability
Cited by: 30
Author(s): Rafael A. Martinez-Feria, Bruno Basso
Software Mentions: 11
Published: about 4 years ago
10.1186/s12866-020-02075-0
Environmental parameters and microbial community profiles as indication towards microbial activities and diversity in aquaponic system compartments
Cited by: 11
Author(s): Zala Schmautz, Carlos Espinal, Andrea M. Bohny, Fabio Rezzonico, Ranka Junge, Emmanuel Frossard, Theo H. M. Smits
Software Mentions: 11
Published: over 3 years ago
10.2196/20329
Induction of Efficacy Expectancies in an Ambulatory Smartphone-Based Digital Placebo Mental Health Intervention: Randomized Controlled Trial
Cited by: 8
Author(s): Esther Stalujanis, Joel Neufeld, Martina Stalder, Angelo Belardi, Marion Tegethoff, Gunther Meinlschmidt
Software Mentions: 11
Published: over 3 years ago
10.1186/s12913-021-06509-x
Importance of patient bed pathways and length of stay differences in predicting COVID-19 hospital bed occupancy in England
Cited by: 20
Author(s): Quentin J. Leclerc, Naomi M. Fuller, Ruth H. Keogh, Karla Díaz-Ordaz, Richard Sekula, Malcolm G Semple, J Kenneth Baillie, Malcolm G Semple, Peter Openshaw, Gail Carson, Beatrice Alex, Benjamin Bach, Wendy S. Barclay, Debby Bogaert, Meera Chand, Graham Cooke, Annemarie B Docherty, Jake Dunning, Ana da Silva Filipe, Tom Fletcher, Christopher Green, Ewen M Harrison, Julian A. Hiscox, Antonia Ho, Peter Horby, Samreen Ijaz, Saye Khoo, Paul Klenerman, Andrew Law, Wei Shen Lim, Alexander J. Mentzer, Laura Merson, Alison Meynert, Mahdad Noursadeghi, Shona C. Moore, Massimo Palmarini, William A. Paxton, Georgios Pollakis, Nicholas Price, Andrew Rambaut, David L. Robertson, Clark D Russell, Vanessa Sancho‐Shimizu, Janet T. Scott, Thushan I. de Silva, Louise Sigfrid, Tom Solomon, Shiranee Sriskandan, D.I. Stuart, Charlotte Summers, Richard S. Tedder, Emma C. Thomson, A. A. Roger Thompson, Ryan S. Thwaites, Lance Turtle, Maria Zambon, Hayley Hardwick, Chloe Donohue, Ruth Lyons, Fiona Griffiths, Wilna Oosthuyzen, Lisa Norman, Riinu Pius, Tom Drake, Cameron J Fairfield, Stephen R Knight, Kenneth A McLean, Derek Murphy, Catherine Shaw, Jo Ann Dalton, James Lee, Daniel Plotkin, Michelle Girvan, Eglė Savičiūtė, Stephanie Roberts, Janet Harrison, Laura Marsh, Marie Connor, Sophie Halpin, Clare Jackson, Carrol Gamble, Claire Petersen, Scott Mullaney, Gary Leeming, Murray Wham, Sara Clohisey, Ross Hendry, James Scott-Brown, William Greenhalf, Victoria Shaw, Sarah E. McDonald, Seán Keating, Katie A. Ahmed, J. A. Armstrong, Milton Ashworth, Innocent G Asiimwe, Siddharth Bakshi, Samantha L. Barlow, Laura Booth, Benjamin Brennan, Katie Bullock, Benjamin W. A. Catterall, Jordan Clark, Emily Clarke, Sarah Cole, Louise Cooper, Helen Cox, Christopher Davis, Oslem Dincarslan, Chris Dunn, Philip Dyer, Angela Elliott, Anthony Evans, Lorna Finch, L. W. Fisher, Terry Foster, Isabel García-Dorival, Philip Gunning, Catherine Hartley, Antonia Ho, Rebecca L. Jensen, Christopher B. Jones, Trevor R. Jones, Shadia Khandaker, Katharine King, Robyn T. Kiy, Chrysa Koukorava, Annette Lake, Suzannah Lant, Diane Latawiec, Lara Lavelle-Langham, Daniella Lefteri, Lauren Lett, Lucia A Livoti, Maria Elisabetta Mancini, Sarah E. McDonald, Laurence McEvoy, John McLauchlan, Soeren Metelmann, Nahida S. Miah, Joanna Middleton, Joyce M. Mitchell, Ellen Murphy, Rebekah Penrice-Randal, Jack Pilgrim, Tessa Prince, Will Reynolds, Paul Ridley, Debby Sales, Victoria Shaw, Rebecca K. Shears, Benjamin Small, Krishanthi Subramaniam, Agnieska Szemiel, Aislynn Taggart, Jolanta Tanianis-Hughes, Jordan Thomas, Erwan Trochu, Libby van Tonder, Eve Wilcock, J. Eunice Zhang, Kayode Adeniji, Daniel Agranoff, Ken Agwuh, Dhiraj Ail, Ana Alegria, Brian Angus, Abdul Ashish, D. Atkinson, Shahedal Bari, Gavin Barlow, Stella Barnass, Nicholas Barrett, Christopher Bassford, David Baxter, Michael Beadsworth, Jolanta Bernatoniene, John C. Berridge, Nicola Best, Pieter Bothma, David Brealey, Robin Brittain-Long, Naomi Bulteel, Tom Burden, Andrew Burtenshaw, Vikki Caruth, David Chadwick, Duncan Chambler, Nigel Chee, Jenny Child, Srikanth Chukkambotla, Tom Clark, Paul Collini, Catherine Cosgrove, Jason Cupitt, Maria-Teresa Cutino-Moguel, Paul Dark, Chris Dawson, Samir Dervisevic, Phil Donnison, Sam Douthwaite, Ingrid DuRand, Ahilanadan Dushianthan, Tristan Dyer, Cariad Evans, Alice C Eziefula, Chrisopher Fegan, Adam Finn, Duncan Fullerton, Sanjeev Garg, Sanjeev Garg, Atul Garg, Effrossyni Gkrania‐Klotsas, Jo Godden, Arthur R. Goldsmith, Clive Graham, Elaine Hardy, Stuart Hartshorn, Daniel Harvey, Peter Havalda, Daniel B. Hawcutt, Maria Hobrok, Luke Hodgson, Anil Hormis, Michael Jacobs, Susan Jain, Paul Jennings, Agilan Kaliappan, Vidya Kasipandian, Stephen Kegg, M.C. Kelsey, Jason Kendall, Caroline Kerrison, Ian Kerslake, Oliver Koch, Gouri Koduri, George Koshy, Shondipon Laha, Steven Laird, Susan Larkin, Tamás Leiner, Patrick Lillie, James Limb, Vanessa Linnett, Jeff Little, Michael MacMahon, Emily Macnaughton, Ravish Mankregod, Huw Masson, Elijah Matovu, Katherine McCullough, Ruth McEwen, Manjula Meda, Gary L. Mills, Jane Minton, Mariyam Mirfenderesky, Kavya Mohandas, Quen Mok, James Moon, Elinoor Moore, Patrick Morgan, Craig C. Morris, Katherine Mortimore, Samuel Moses, Mbiye Mpenge, Rohinton Mulla, Michael V. Murphy, Megan Nagel, Thapas Nagarajan, Mark Nelson, Igor Otahal, Mark Pais, Selva Panchatsharam, Hassan Paraiso, Brij Patel, Natalie Pattison, Justin Pepperell, Mark Peters, Mandeep Phull, Stefania Pintus, Jagtur Singh Pooni, Frank A. Post, David J. Price, Rachel Prout, Nikolas Rae, Henrik Reschreiter, Tim Reynolds, Neil Richardson, Mark Roberts, Devender Roberts, Alistair Rose, Guy Rousseau, Brendan Ryan, Taranprit Saluja, Aarti Shah, Prad Shanmuga, Anil Sharma, Anna Shawcross, Jeremy Sizer, Manu Shankar-Hari, Richard Smith, Catherine Snelson, Nick Spittle, Nikki Staines, Tom Stambach, Richard Stewart, Pradeep Subudhi, Tamás Szakmány, Kate Tatham, Thomas Jo, Chris Thompson, Robert J. Thompson, Ascanio Tridente, Darell Tupper-Carey, Mary Twagira, Andrew Ustianowski, Nick Vallotton, Lisa Vincent-Smith, Shico Visuvanathan, Alan Vuylsteke, Sam Waddy, Rachel Wake, Andrew Walden, Ingeborg Welters, Tony Whitehouse, Paul Whittaker, Ashley Whittington, Meme Wijesinghe, Martin Williams, Lawrence A. Wilson, Sarah Wilson, Stephen Winchester, Martin Wiselka, Adam Wolverson, Daniel G. Wooton, Andrew Workman, Bryan Yates, Peter Young, Matthew Quaife, Christopher Jarvis, Sophie Meakin, Billy J Quilty, Kiesha Prem, C. Julian Villabona-Arenas, Fiona Yueqian Sun, Kaja Abbas, Megan Auzenbergs, Amy Gimma, Damien C. Tully, Katharine Sherratt, Alicia Roselló, Nicholas Davies, Yang Liu, Rachel Lowe, Hamish Gibbs, Naomi R. Waterlow, W. John Edmunds, David Simons, Graham Medley, James D. Munday, Stefan Flasche, Frank Sandmann, Alicia Showering, Rosalind M Eggo, Yung-Wai Desmond Chan, Carl A. B. Pearson, Adam J. Kucharski, Anna M Foss, Timothy Russell, Nikos I. Bosse, Mark Jit, Sam Abbott, Jack Williams, Akira Endo, Samuel Clifford, Georgia R. Gore-Langton, Petra Klepac, Oliver J. Brady, Joel Hellewell, Sebastian Funk, Kevin van Zandvoort, Rosanna C. Barnard, Emily Nightingale, Thibaut Jombart, Katherine E. Atkins, Simon R. Procter, Gwenan M. Knight
Software Mentions: 11
Published: almost 3 years ago
10.1371/journal.pone.0132783
Back to Basics – The Influence of DNA Extraction and Primer Choice on Phylogenetic Analysis of Activated Sludge Communities
Cited by: 388
Author(s): Mads Albertsen, Søren Michael Karst, Anja Ziegler, Rasmus Hansen Kirkegaard, Per Halkjær Nielsen
Software Mentions: 11
Published: almost 9 years ago
10.1128/mSystems.00068-21
Diverse Viruses in Deep-Sea Hydrothermal Vent Fluids Have Restricted Dispersal across Ocean Basins
Cited by: 14
Author(s): Elaina Thomas, R. Anderson, Viola Li, L Jenni Rogan, Julie A. Huber
Software Mentions: 11
Published: almost 3 years ago
10.3389/fmolb.2021.635074
Decoding Neuromuscular Disorders Using Phenotypic Clusters Obtained From Co-Occurrence Networks
Cited by: 3
Author(s): Elena Díaz-Santiago, M. Gonzalo Claros, Raquel Yahyaoui, Yolanda de Diego-Otero, Rocío Velasco Calvo, Janet Hoenicka, Francesc Palau, Juan A. G. Ranea, James R. Perkins
Software Mentions: 11
Published: about 3 years ago
10.3390/jcm9082591
Risk of Adverse Drug Events Following the Virtual Addition of COVID-19 Repurposed Drugs to Drug Regimens of Frail Older Adults with Polypharmacy
Cited by: 14
Author(s): Sweilem B. Al Rihani, Matt K. Smith, Ravil Bikmetov, Malavika Deodhar, Pamela Dow, Jacques Turgeon, Véronique Michaud
Software Mentions: 11
Published: almost 4 years ago
10.1038/s41598-021-93411-5
Epidemiological overview of multidimensional chromosomal and genome toxicity of cannabis exposure in congenital anomalies and cancer development
Cited by: 33
Author(s): Albert Stuart Reece, Gary Kenneth Hulse
Software Mentions: 11
Published: almost 3 years ago
10.1038/s41598-021-92406-6
Plasma lipidomic analysis shows a disease progression signature in mdx mice
Cited by: 3
Author(s): Roula Tsonaka, Alexandre Seyer, Annemieke Aartsma‐Rus, Pietro Spitali
Software Mentions: 11
Published: almost 3 years ago
10.3390/biomedicines8110488
TCox: Correlation-Based Regularization Applied to Colorectal Cancer Survival Data
Cited by: 4
Author(s): Carolina Peixoto, Marta B. Lopes, Marta Martins, Luís Costa, Susana Vinga
Software Mentions: 11
Published: over 3 years ago
10.1371/journal.pone.0235283
Targeting the oral plaque microbiome with immobilized anti-biofilm peptides at tooth-restoration interfaces
Cited by: 18
Author(s): Dina G. Moussa, Conrado Aparicio
Software Mentions: 11
Published: almost 4 years ago
10.1002/ece3.6904
Light might suppress both types of sound‐evoked antipredator flight in moths
Cited by: 2
Author(s): Theresa Hügel, Holger R. Goerlitz
Software Mentions: 11
Published: over 3 years ago
10.7717/peerj.5209
Distribution and ecological segregation on regional and microgeographic scales of the diploid<i>Centaurea aspera</i>L., the tetraploid<i>C. seridis</i>L., and their triploid hybrids (Compositae)
Cited by: 5
Author(s): Alfonso Garmendia, Hugo Merlé, Pablo L. Ruiz, M. Ferriol
Software Mentions: 11
Published: almost 6 years ago
10.3389/fmicb.2019.01770
Gut Microbiota as an Objective Measurement for Auxiliary Diagnosis of Insomnia Disorder
Cited by: 55
Author(s): Bingdong Liu, Win Lin, Shujie Chen, Ting Xiang, Yifan Yang, Yulong Yin, Guohuan Xu, Zhihong Liu, Li Liu, Jiyang Pan, Liwei Xie
Software Mentions: 11
Published: almost 5 years ago
10.1371/journal.pone.0207126
Prognostic function to estimate the probability of meaningful clinical improvement after surgery - Results of a prospective multicenter observational cohort study on patients with lumbar spinal stenosis
Cited by: 20
Author(s): Ulrike Held, Jakob M Burgstaller, Maria M. Wertli, Giuseppe Pichierri, Sebastian Winklhofer, Florian Brunner, François Porchet, Mazda Farshad, Johann Steurer
Software Mentions: 11
Published: over 5 years ago
10.3389/fmicb.2020.00926
Chromosome Architecture and Gene Content of the Emergent Pathogen Acinetobacter haemolyticus
Cited by: 3
Author(s): Semiramis Castro-Jaimes, Elena Bello-López, Consuelo Velázquez-Acosta, Patricia Volkow-Fernández, Patricia Lozano-Zaraín, Santiago Castillo-Ramírez, Miguel A. Cevallos
Software Mentions: 11
Published: almost 4 years ago
10.7717/peerj.9494
Quantifying local ecological knowledge to model historical abundance of long-lived, heavily-exploited fauna
Cited by: 15
Author(s): Michelle María Early Capistrán, Elena Solana‐Arellano, F. Alberto Abreu‐Grobois, Nemer E. Narchi, Gerardo Garibay‐Melo, Jeffrey A. Seminoff, Volker Koch, Andrea Sáenz–Arroyo
Software Mentions: 11
Published: almost 4 years ago
10.18632/oncotarget.22928
Comparing the genomes of cutaneous melanoma tumors to commercially available cell lines
Cited by: 10
Author(s): Stephen A. Luebker, Weiwei Zhang, Scott A. Koepsell
Software Mentions: 11
Published: over 6 years ago
10.3389/fmicb.2021.633659
Harnessing the Potential of Native Microbial Communities for Bioremediation of Oil Spills in the Iberian Peninsula NW Coast
Cited by: 14
Author(s): Maria Luis de Vilar Correia Brito Bôto, Catarina Magalhães, Rafaela Perdigão, Diogo A. M. Alexandrino, Joana P. Fernandes, Ana M. Bernabéu, Sandra Ramos, Maria F. Carvalho, Miguel Semedo, Julie LaRoche, C. Marisa R. Almeida, Ana P. Mucha
Software Mentions: 11
Published: about 3 years ago
10.1038/s41598-020-68780-y
Protecting endangered species in the USA requires both public and private land conservation
Cited by: 15
Author(s): Niall G. Clancy, John P. Draper, J. Marshall Wolf, Umarfarooq A. Abdulwahab, Maya Pendleton, Soren Brothers, Janice Brahney, Jennifer Weathered, Edd Hammill, Trisha B. Atwood
Software Mentions: 11
Published: almost 4 years ago
10.1167/jov.21.1.1
Flexible contextual modulation of naturalistic texture perception in peripheral vision
Cited by: 9
Author(s): Daniel Herrera-Esposito, Ruben Coen-Cagli, Leonel Gómez-Sena
Software Mentions: 11
Published: over 3 years ago
10.7717/peerj.4152
Population structure and phenotypic variation of<i>Sclerotinia sclerotiorum</i>from dry bean (<i>Phaseolus vulgaris</i>) in the United States
Cited by: 28
Author(s): Zhian N. Kamvar, Bimal S. Amaradasa, Rachana Jhala, Serena McCoy, James R. Steadman, Sydney E. Everhart
Software Mentions: 11
Published: over 6 years ago
10.3389/fimmu.2020.612784
Integrated Analysis of the ETS Family in Melanoma Reveals a Regulatory Role of ETV7 in the Immune Microenvironment
Cited by: 14
Author(s): Hui Qü, Hui Zhao, Xi Zhang, Yang Liu, Feng Li, Li-Yan Sun, Zewen Song
Software Mentions: 11
Published: over 3 years ago
10.1017/S003329171800315X
A machine learning ensemble to predict treatment outcomes following an Internet intervention for depression
Cited by: 37
Author(s): Rahel Pearson, Derek Pisner, Björn Meyer, Jason Shumake, Christopher G. Beevers
Software Mentions: 11
Published: over 5 years ago
10.3758/s13428-020-01385-5
Improving the robustness of infant lexical processing speed measures
Cited by: 7
Author(s): Julia Egger, Caroline F. Rowland, Christina Bergmann
Software Mentions: 11
Published: about 4 years ago
10.1371/journal.pone.0254651
Environmental impacts on diapause and survival of the alfalfa leafcutting bee, Megachile rotundata
Cited by: 4
Author(s): Elisabeth S. Wilson, Claire Murphy, Covey Wong, Joseph P. Rinehart, George D. Yocum, Julia H. Bowsher
Software Mentions: 11
Published: almost 3 years ago
10.7717/peerj.4251
Sicegar: R package for sigmoidal and double-sigmoidal curve fitting
Cited by: 28
Author(s): Mehmet Umut Caglar, Ashley I. Teufel, Claus O. Wilke
Software Mentions: 11
Published: over 6 years ago
10.3389/fnut.2021.676026
Food Sources Contributing to Intake of Choline and Individual Choline Forms in a Norwegian Cohort of Patients With Stable Angina Pectoris
Cited by: 8
Author(s): Anthea Van Parys, Therese Karlsson, Kathrine J. Vinknes, Trond E. Olsen, Jannike Øyen, Jutta Dierkes, Ottar Nygård, Vegard Lysne
Software Mentions: 11
Published: about 3 years ago
10.1038/s41598-021-89020-x
Gene-environment dependencies lead to collider bias in models with polygenic scores
Cited by: 29
Author(s): Evelina T. Akimova, Richard Breen, David M. Brazel, Melinda Mills
Software Mentions: 11
Published: about 3 years ago
10.3389/fpsyg.2020.555576
Trail Pheromone Does Not Modulate Subjective Reward Evaluation in Lasius niger Ants
Cited by: 3
Author(s): Felix B. Oberhauser, Stephanie Wendt, Tomer J. Czaczkes
Software Mentions: 10
Published: over 3 years ago
10.3389/pore.2021.594649
Bcl-2 Associated Athanogene 2 (BAG2) is Associated With Progression and Prognosis of Hepatocellular Carcinoma: A Bioinformatics-Based Analysis
Cited by: 7
Author(s): Xi Zhang, Junjun Zhang, Yang Liu, Jie Li, Juan Tan, Zewen Song
Software Mentions: 10
Published: about 3 years ago
10.1038/s41598-019-42533-y
MeshMonk: Open-source large-scale intensive 3D phenotyping
Cited by: 78
Author(s): Julie D. White, Alejandra Ortega-Castrillón, Harold Matthews, Arslan Zaidi, Omid Ekrami, Jonatan Snyders, Yi Fan, Tony Penington, Stefan Van Dongen, Mark D. Shriver, Peter Claes
Software Mentions: 10
Published: about 5 years ago
10.1038/s41598-019-46290-w
GeneHunt for rapid domain-specific annotation of glycoside hydrolases
Cited by: 14
Author(s): SC Nguyen, A. Flores, D. Talamantes, Furqan Dar, Adrian Roy L. Valdez, Jason P. Schwans, Renaud Berlemont
Software Mentions: 10
Published: almost 5 years ago
10.1186/s12859-015-0613-1
tcR: an R package for T cell receptor repertoire advanced data analysis
Cited by: 199
Author(s): Vadim Nazarov, Mikhail V. Pogorelyy, Ekaterina A. Komech, Ivan V. Zvyagin, Dmitriy A. Bolotin, Mikhail Shugay, Dmitriy M. Chudakov, Yuri B. Lebedev, Ilgar Z. Mamedov
Software Mentions: 10
Published: almost 9 years ago
10.1038/s41598-017-09303-0
The impact of immigration on microbial community composition in full-scale anaerobic digesters
Cited by: 111
Author(s): Rasmus Hansen Kirkegaard, Simon Jon McIlroy, Jannie Munk Kristensen, Marta Nierychlo, Søren Michael Karst, Morten Simonsen Dueholm, Mads Albertsen, Per Halkjær Nielsen
Software Mentions: 10
Published: over 6 years ago
10.3389/fpsyg.2021.620307
No Evidence for a Decrease in Physical Activity Among Swiss Office Workers During COVID-19: A Longitudinal Study
Cited by: 19
Author(s): Andrea Martina Aegerter, Manja Deforth, Gisela Sjøgaard, Venerina Johnston, Thomas Volken, Hannu Luomajoki, Julia Dratva, Holger Dressel, Oliver Distler, Markus Melloh, Achim Elfering
Software Mentions: 10
Published: over 3 years ago
10.1186/s40360-021-00505-x
Causal inference multiple imputation investigation of the impact of cannabinoids and other substances on ethnic differentials in US testicular cancer incidence
Cited by: 26
Author(s): Albert Stuart Reece, Gary Kenneth Hulse
Software Mentions: 10
Published: almost 3 years ago
10.3390/v12111229
RNAseq of Deformed Wing Virus and Other Honey Bee-Associated Viruses in Eight Insect Taxa with or without Varroa Infestation
Cited by: 17
Author(s): Laura E. Brettell, Declan C. Schroeder, Stephen J. Martin
Software Mentions: 10
Published: over 3 years ago
10.1093/aje/kwaa127
Conditional Cash Transfer Program and Leprosy Incidence: Analysis of 12.9 Million Families From the 100 Million Brazilian Cohort
Cited by: 15
Author(s): Júlia Moreira Pescarini, Elizabeth Williamson, Maria Yury Ichihara, Rosemeire Leovigildo Fiaccone, Laura Forastiere, Anna Ramond, Joilda Silva Nery, Maria Lúcia Fernandes Penna, Agostino Strina, Sandra Reis, Liam Smeeth, Laura C. Rodrigues, Elizabeth B Brickley, Gerson Oliveira Penna, Marcos Barreto
Software Mentions: 10
Published: almost 4 years ago
10.1371/journal.pone.0208780
Clusters of high abundance of plants detected from local indicators of spatial association (LISA) in a semi-deciduous tropical forest
Cited by: 13
Author(s): José Ramón Martínez Batlle, Yntze van der Hoek
Software Mentions: 10
Published: over 5 years ago
10.1098/rsos.191333
Now or never: noticing occurs early in sustained inattentional blindness
Cited by: 4
Author(s): Katherine Wood, Daniel J. Simons
Software Mentions: 10
Published: over 4 years ago
10.3390/ijerph17218164
Differences in the Estimation of Wildfire-Associated Air Pollution by Satellite Mapping of Smoke Plumes and Ground-Level Monitoring
Cited by: 9
Author(s): Raj P. Fadadu, John R. Balmes, Stephanie M. Holm
Software Mentions: 10
Published: over 3 years ago
10.12688/f1000research.11997.1
valr: Reproducible genome interval analysis in R
Cited by: 43
Author(s): Kent Riemondy, Ryan M. Sheridan, Austin E. Gillen, Yinni Yu, Christopher Bennett, Jay R. Hesselberth
Software Mentions: 10
Published: almost 7 years ago
10.12688/f1000research.13925.3
BED: a Biological Entity Dictionary based on a graph data model
Cited by: 1
Author(s): Patrice Godard, Jonathan van Eyll
Software Mentions: 10
Published: almost 6 years ago
10.3389/fonc.2021.661040
A Novel Prognostic Model and Practical Nomogram for Predicting the Outcomes of Colorectal Cancer: Based on Tumor Biomarkers and Log Odds of Positive Lymph Node Scheme
Cited by: 9
Author(s): Zhu Jun, Jun Hao, Qian Ma, Tong Shi, Shuai Wang, Jingchuan Yan, Rujie Chen, Dong Xu, Yu Jiang, Jian Zhang, Jipeng Li
Software Mentions: 10
Published: about 3 years ago
10.3390/ijerph18168271
Cluster Analysis of Urban Acoustic Environments on Barcelona Sensor Network Data
Cited by: 10
Author(s): Antonio Pita, Francisco Javier Iglesias Rodríguez, Juan M. Navarro
Software Mentions: 10
Published: almost 3 years ago
10.3390/microorganisms9081723
Fecal Supernatant from Adult with Autism Spectrum Disorder Alters Digestive Functions, Intestinal Epithelial Barrier, and Enteric Nervous System
Cited by: 7
Author(s): Jacques Gonzalès, Justine Marchix, Laetitia Aymeric, Catherine Le Berre‐Scoul, Johanna Zoppi, Philippe Bordron, Marie Burel, Laetitia Davidovic, J. L. Richard, Alexandru Gaman, Florian Lejuste, Julie Z. Brouillet, Françoise Le Vacon, Samuel Chaffron, Marion Leboyer, Hélène Boudin, Michel Neunlist
Software Mentions: 10
Published: almost 3 years ago
10.1371/journal.pone.0178895
Familiarity facilitates feature-based face processing
Cited by: 18
Author(s): Matteo Visconti di Oleggio Castello, Kelsey G. Wheeler, Carlo Cipolli, M. Ida Gobbini
Software Mentions: 10
Published: almost 7 years ago
10.1017/S0950268820000746
Risk of bacteremia in patients presenting with shaking chills and vomiting - a prospective cohort study
Cited by: 2
Author(s): Madlene Holmqvist, Malin Inghammar, Lisa I. Påhlman, John H. Boyd, Per Åkesson, Adam Linder, Fredrik Kahn
Software Mentions: 10
Published: over 4 years ago
10.1186/s12864-019-6181-4
Dynamic transcriptome sequencing and analysis during early development in the bighead carp (Hypophthalmichthys nobilis)
Cited by: 12
Author(s): Jianjun Fu, Wenbin Zhu, Lanmei Wang, Ming Luo, Fei Song, Zaijie Dong
Software Mentions: 10
Published: over 4 years ago
10.1128/mSystems.00571-21
Pathogenic <i>Vibrio</i> Species Are Associated with Distinct Environmental Niches and Planktonic Taxa in Southern California (USA) Aquatic Microbiomes
Cited by: 11
Author(s): Rachel E. Diner, Drishti Kaul, Ariel Rabines, Hong Zheng, Joshua A. Steele, John F. Griffith, Andrew E. Allen
Software Mentions: 10
Published: over 2 years ago
10.1172/jci.insight.138970
Hypoxia acts as an environmental cue for the human tissue-resident memory T cell differentiation program
Cited by: 21
Author(s): Farah Hasan, Yulun Chiu, Rebecca Shaw, Junmei Wang, Cassian Yee
Software Mentions: 10
Published: almost 3 years ago
10.1080/19336896.2020.1751574
Estimation of amyloid aggregate sizes with semi-denaturing detergent agarose gel electrophoresis and its limitations
Cited by: 10
Author(s): Polina Drozdova, Yury A. Barbitoff, М. В. Белоусов, Rostislav K. Skitchenko, Tatyana Rogoza, Jeremy Y Leclercq, Andrey V. Kajava, Andrew G. Matveenko, Galina A. Zhouravleva, Stanislav A. Bondarev
Software Mentions: 10
Published: over 4 years ago
10.1007/s11250-021-02620-7
Risk factors associated with Ctenocephalides felis flea infestation of peri-urban goats: a neglected parasite in an under-appreciated host
Cited by: 4
Author(s): Julia Rose Dahm, Jordana Burdon Bailey, Robert F. Kelly, Patrick Chikungwa, Julius L.C. Chulu, Lívio Martins Costa, Emily June Freeman, Dagmar Mayer, Stella Mazeri, Neil Sargison
Software Mentions: 10
Published: about 3 years ago
10.3389/fmicb.2021.634503
Cottonseed Press Cake as a Potential Diet for Industrially Farmed Black Soldier Fly Larvae Triggers Adaptations of Their Bacterial and Fungal Gut Microbiota
Cited by: 26
Author(s): Dorothee Tegtmeier, Sabine Hurka, Patrick Klüber, Karina Brinkrolf, Philipp Heise, Andreas Vilcinskas
Software Mentions: 10
Published: about 3 years ago
10.1093/iob/obaa024
The Balance Hypothesis for the Avian Lumbosacral Organ and an Exploration of Its Morphological Variation
Cited by: 11
Author(s): Kathryn E Stanchak, C. French, David J. Perkel, Bingni W. Brunton
Software Mentions: 10
Published: over 4 years ago
10.1128/mSphere.00743-20
Whole-Genome Sequence Analysis of an Extensively Drug-Resistant Salmonella enterica Serovar Agona Isolate from an Australian Silver Gull ( <i>Chroicocephalus novaehollandiae</i> ) Reveals the Acquisition of Multidrug Resistance Plasmids
Cited by: 17
Author(s): Max L. Cummins, Martina L. Sanderson-Smith, Peter Newton, Nicholas Carlile, David N. Phalen, Kimberly Maute, Leigh G. Monahan, Bethany J. Hoye, Steven P. Djordjevic
Software Mentions: 10
Published: over 3 years ago
10.1002/brb3.2174
Co‐activation pattern alterations in autism spectrum disorder–A volume‐wise hierarchical clustering fMRI study
Cited by: 2
Author(s): Jyri‐Johan Paakki, Jukka S. Rahko, Aija Kotila, Marja‐Leena Mattila, Helena Miettunen, Tuula Hurtig, Katja Jussila, Sanna Kuusikko‐Gauffin, Irma Moilanen, Osmo Tervonen, Vesa Kiviniemi
Software Mentions: 10
Published: about 3 years ago
10.1038/s41416-020-0764-3
A common polymorphism in the retinoic acid pathway modifies adrenocortical carcinoma age-dependent incidence
Cited by: 7
Author(s): Mirvat Surakhy, Marsha D. Wallace, Elisabeth E. Bond, Lukasz F. Grochola, Husein Perez, Matteo Di Giovannantonio, Ping Zhang, David Malkin, Hannah Carter, Ivy Zortéa S Parise, Gerard P. Zambetti, Heloísa Komechen, Mariana M Paraizo, Meghana Pagadala, Emília M. Pinto, Enzo Lalli, Bonald C. Figueiredo, Gareth L. Bond
Software Mentions: 10
Published: about 4 years ago
10.3389/fmicb.2021.643730
Particle Collection in Imhoff Sedimentation Cones Enriches Both Motile Chemotactic and Particle-Attached Bacteria
Cited by: 8
Author(s): Anneke Heins, Greta Reintjes, Rudolf Amann, Jens Harder
Software Mentions: 10
Published: about 3 years ago
10.3389/fmicb.2018.01598
Microbiome Composition in Both Wild-Type and Disease Model Mice Is Heavily Influenced by Mouse Facility
Cited by: 60
Author(s): Kristopher D. Parker, Shannon E. Albeke, Jason P. Gigley, Allan M. Goldstein, Naomi Ward
Software Mentions: 10
Published: almost 6 years ago
10.3389/fmicb.2021.679671
Measurement of Volatile Compounds for Real-Time Analysis of Soil Microbial Metabolic Response to Simulated Snowmelt
Cited by: 4
Author(s): Junhyeong Kim, A. H. Goldstein, Romy Chakraborty, Kolby Jardine, Robert J. Weber, P. Sørensen, Wang Shi, Boris Faybishenko, Pawel K. Misztal, Eoin L. Brodie
Software Mentions: 10
Published: almost 3 years ago
10.1155/2017/7457131
NFP: An R Package for Characterizing and Comparing of Annotated Biological Networks
Cited by: 0
Author(s): Yang Cao, Wenjian Xu, Chao Niu, Xiaochen Bo, Fēi Li
Software Mentions: 10
Published: over 7 years ago
10.1038/s41598-020-70722-7
Active and social life is associated with lower non-social fearfulness in pet dogs
Cited by: 15
Author(s): Emma Hakanen, Salla Mikkola, Milla Salonen, Jenni Puurunen, Sini Sulkama, Cynthia Gobbi Alves Araújo, Hannes Lohi
Software Mentions: 10
Published: almost 4 years ago
10.1038/s41598-020-72272-4
Video-assisted thoracoscopic lobectomy is feasible for selected patients with clinical N2 non-small cell lung cancer
Cited by: 7
Author(s): Jae Kwang Yun, Geun Dong Lee, Sehoon Choi, Hyeong Ryul Kim, Yong Hee Kim, Seung-Il Park, Dong Kwan Kim
Software Mentions: 10
Published: over 3 years ago
10.3390/plants10091921
UHPLC-Orbitrap-MS Tentative Identification of 51 Oleraceins (Cyclo-Dopa Amides) in Portulaca oleracea L. Cluster Analysis and MS2 Filtering by Mass Difference
Cited by: 2
Author(s): Yulian Voynikov, Paraskev Nedialkov, Reneta Gevrenova, Dimitrina Zheleva‐Dimitrova, Vessela Balabanova, Иван Димитров
Software Mentions: 10
Published: over 2 years ago
10.1371/journal.pone.0250477
Geometric morphometric analysis of spore shapes improves identification of fungi
Cited by: 0
Author(s): Alexander Ordynets, Sarah Jayne Kessler, Ewald Langer
Software Mentions: 10
Published: almost 3 years ago
10.7717/peerj.7907
motoRneuron: an open-source R toolbox for time-domain motor unit analyses
Cited by: 0
Author(s): Andrew J. Tweedell, Matthew S. Tenan
Software Mentions: 10
Published: over 4 years ago
10.5334/aogh.3278
Derivation of a Contextually-Appropriate COVID-19 Mortality Scale for Low-Resource Settings
Cited by: 5
Author(s): Jennifer L Pigoga, Yasein Omer, Lee Wallis
Software Mentions: 10
Published: about 3 years ago
10.1038/s41598-020-72047-x
Light intensity regulates flower visitation in Neotropical nocturnal bees
Cited by: 11
Author(s): Rodolfo Liporoni, Guaraci Duran Cordeiro, Paulo Inácio Prado, Clemens Schlindwein, Eric J. Warrant, Isabel Alves‐dos‐Santos
Software Mentions: 10
Published: over 3 years ago